Wall clock time and date at job start Mon Mar 30 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86807 * 119.99760 * 2 1 4 4 H 1.48495 * 109.46697 * 269.99776 * 3 2 1 5 5 H 1.48502 * 109.47148 * 29.99590 * 3 2 1 6 6 H 1.48493 * 109.47058 * 149.99632 * 3 2 1 7 7 C 1.37869 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99891 * 184.27009 * 7 2 1 9 9 C 1.50702 * 120.00281 * 4.27539 * 7 2 1 10 10 H 1.08991 * 109.46826 * 24.83188 * 9 7 2 11 11 N 1.46903 * 109.47076 * 144.83666 * 9 7 2 12 12 C 1.46903 * 110.99638 * 274.99870 * 11 9 7 13 13 H 1.08993 * 115.55368 * 350.58531 * 12 11 9 14 14 C 1.53002 * 117.49534 * 136.25673 * 12 11 9 15 15 C 1.52999 * 117.49457 * 204.91264 * 12 11 9 16 16 C 1.52992 * 138.58540 * 121.62030 * 15 12 11 17 17 C 1.52985 * 138.59145 * 23.40704 * 15 12 11 18 18 C 1.50700 * 109.46819 * 264.83547 * 9 7 2 19 19 C 1.38230 * 119.99845 * 104.75047 * 18 9 7 20 20 C 1.38239 * 120.00239 * 179.97438 * 19 18 9 21 21 C 1.38234 * 119.99665 * 0.02562 * 20 19 18 22 22 C 1.38243 * 120.00334 * 359.97438 * 21 20 19 23 23 C 1.38238 * 119.99651 * 0.04391 * 22 21 20 24 24 H 0.97002 * 119.99836 * 0.02562 * 1 2 3 25 25 H 1.00894 * 111.00146 * 38.95274 * 11 9 7 26 26 H 1.08999 * 117.49973 * 214.97722 * 14 12 11 27 27 H 1.08998 * 117.50048 * 359.97438 * 14 12 11 28 28 H 1.08998 * 117.49979 * 336.59454 * 16 15 12 29 29 H 1.09009 * 117.49740 * 121.61557 * 16 15 12 30 30 H 1.08999 * 117.50106 * 238.38132 * 17 15 12 31 31 H 1.09008 * 117.49748 * 23.37652 * 17 15 12 32 32 H 1.08000 * 120.00285 * 359.97438 * 19 18 9 33 33 H 1.07997 * 120.00627 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.00440 * 179.69965 * 21 20 19 35 35 H 1.07991 * 120.00203 * 179.97438 * 22 21 20 36 36 H 1.07992 * 120.00008 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0824 -1.1952 0.0702 9 6 1.2542 -2.4974 -0.0962 10 1 0.2947 -2.3287 -0.5848 11 7 2.0412 -3.4583 -0.8806 12 6 1.8005 -3.2856 -2.3194 13 1 0.9847 -2.6123 -2.5821 14 6 3.0161 -3.3185 -3.2479 15 6 2.0377 -4.4955 -3.2255 16 6 1.2546 -5.3558 -4.2191 17 6 2.0794 -6.0208 -3.1154 18 6 1.0234 -3.0479 1.2875 19 6 -0.2307 -2.9672 1.8631 20 6 -0.4427 -3.4727 3.1322 21 6 0.5998 -4.0583 3.8259 22 6 1.8541 -4.1391 3.2503 23 6 2.0660 -3.6332 1.9813 24 1 -0.4850 0.8401 -0.0004 25 1 3.0241 -3.3809 -0.6665 26 1 2.9999 -2.6671 -4.1217 27 1 3.9945 -3.4679 -2.7911 28 1 0.1694 -5.3782 -4.1194 29 1 1.6346 -5.4190 -5.2389 30 1 3.0020 -6.5215 -3.4088 31 1 1.5371 -6.4808 -2.2892 32 1 -1.0451 -2.5093 1.3214 33 1 -1.4224 -3.4093 3.5821 34 1 0.4355 -4.4489 4.8193 35 1 2.6686 -4.5962 3.7923 36 1 3.0460 -3.6959 1.5318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715235275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:27 Heat of formation + Delta-G solvation = 66.982805 kcal Electronic energy + Delta-G solvation = -16966.385466 eV Core-core repulsion = 14416.347580 eV Total energy + Delta-G solvation = -2550.037887 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04049 -39.11663 -36.46414 -34.30211 -32.80573 -31.50420 -30.46939 -27.79468 -24.63779 -23.30701 -23.18886 -22.30234 -21.48795 -19.85629 -18.68340 -17.51557 -16.83680 -16.22824 -16.04066 -15.76816 -15.46132 -15.18069 -14.98395 -14.00762 -13.95030 -13.62343 -13.42980 -13.22759 -12.83205 -12.76079 -12.44737 -12.27894 -12.08955 -11.88463 -11.82115 -11.39088 -11.08036 -10.83054 -10.70841 -10.54304 -9.54390 -9.28720 -8.91760 -8.10873 -6.31335 0.78184 0.84996 1.36390 1.37991 1.46548 2.36574 2.81305 2.94510 3.08982 3.27350 3.45761 3.84792 4.05986 4.25841 4.28401 4.34279 4.47013 4.68252 4.74778 4.79241 4.80939 4.89191 4.91965 4.93160 5.04633 5.08177 5.13253 5.15180 5.35965 5.44331 5.50017 5.63839 5.82760 5.90408 6.00212 6.20205 6.34732 6.46597 6.82776 6.91514 7.37901 8.86479 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.009821 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.902513 B = 2850.480321 C = 4332.858940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.242 3.758 10 H 0.031 0.969 11 N -0.648 5.648 12 C 0.076 3.924 13 H 0.074 0.926 14 C -0.139 4.139 15 C -0.244 4.244 16 C -0.124 4.124 17 C -0.116 4.116 18 C -0.038 4.038 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.128 4.128 23 C -0.126 4.126 24 H 0.263 0.737 25 H 0.332 0.668 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -8.628 -1.103 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.134 3.866 10 H 0.049 0.951 11 N -0.275 5.275 12 C -0.035 4.035 13 H 0.092 0.908 14 C -0.178 4.178 15 C -0.246 4.246 16 C -0.161 4.161 17 C -0.153 4.153 18 C -0.039 4.039 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.166 4.166 22 C -0.146 4.146 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.150 0.850 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.149 0.851 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.943 -9.012 -1.013 9.534 hybrid contribution 0.514 2.234 -0.253 2.307 sum 3.457 -6.777 -1.266 7.713 Atomic orbital electron populations 1.70039 1.07122 1.27478 1.50126 1.25667 0.95573 1.02244 0.94124 0.85692 0.78840 0.79745 0.78215 1.20021 1.21175 1.19383 1.21848 0.93048 0.91870 1.51332 0.92730 1.18130 0.93750 0.87198 0.87572 0.95067 1.60503 1.11898 1.52446 1.02662 1.21835 0.98805 0.96426 0.86451 0.90838 1.23157 0.94471 0.98210 1.01931 1.22000 1.06291 0.90803 1.05457 1.22733 0.97997 1.00276 0.95120 1.22542 1.01906 0.90723 1.00137 1.20403 0.92854 0.92768 0.97852 1.21029 0.97019 1.00956 0.96809 1.21271 1.00019 0.99239 0.94333 1.21250 0.92908 1.01695 1.00703 1.21356 0.97935 1.00258 0.95013 1.20941 0.98415 0.99706 0.95354 0.92823 0.84976 0.88401 0.88229 0.89150 0.86947 0.87422 0.89490 0.88909 0.85139 0.83768 0.84104 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.84 12.83 21.45 0.28 -51.56 16 2 C 0.03 1.37 5.45 84.65 0.46 1.83 16 3 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.54 -28.79 8.19 25.60 0.21 -28.58 16 8 H 0.05 2.87 7.76 -2.91 -0.02 2.84 16 9 C 0.24 12.07 2.23 43.42 0.10 12.17 16 10 H 0.03 1.80 6.60 -2.39 -0.02 1.78 16 11 N -0.65 -27.84 6.09 -477.18 -2.91 -30.74 16 12 C 0.08 3.08 6.14 44.92 0.28 3.35 16 13 H 0.07 3.40 7.60 -2.39 -0.02 3.39 16 14 C -0.14 -4.56 10.23 30.62 0.31 -4.24 16 15 C -0.24 -7.97 5.60 -52.17 -0.29 -8.26 16 16 C -0.12 -3.27 10.53 30.59 0.32 -2.95 16 17 C -0.12 -3.17 10.53 30.59 0.32 -2.85 16 18 C -0.04 -1.77 4.93 -19.87 -0.10 -1.87 16 19 C -0.14 -6.39 9.67 22.27 0.22 -6.18 16 20 C -0.13 -4.90 10.05 22.27 0.22 -4.68 16 21 C -0.15 -4.86 10.05 22.27 0.22 -4.64 16 22 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 23 C -0.13 -5.15 9.28 22.27 0.21 -4.95 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.33 13.67 7.64 -89.70 -0.69 12.98 16 26 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.10 3.04 8.09 -2.39 -0.02 3.02 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.09 4.61 8.00 -2.91 -0.02 4.59 16 33 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.14 3.78 8.06 -2.92 -0.02 3.76 16 36 H 0.11 4.39 7.41 -2.91 -0.02 4.37 16 Total: -1.00 -59.93 309.02 2.48 -57.45 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.38 Total: 35.60 kcal Atomic # 6 Polarization: -58.69 SS G_CDS: 2.70 Total: -55.99 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.63 Total: -82.31 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -59.93 2.48 -57.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715235275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.433 kcal (2) G-P(sol) polarization free energy of solvation -59.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds