Wall clock time and date at job start Mon Mar 30 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99963 * 2 1 4 4 H 1.48508 * 109.47206 * 264.84352 * 3 2 1 5 5 H 1.48501 * 109.47069 * 24.84159 * 3 2 1 6 6 H 1.48498 * 109.47284 * 144.84490 * 3 2 1 7 7 C 1.37884 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99452 * 354.53681 * 7 2 1 9 9 C 1.50699 * 120.00135 * 174.54606 * 7 2 1 10 10 H 1.09000 * 109.46934 * 0.84750 * 9 7 2 11 11 N 1.46902 * 109.46805 * 240.85550 * 9 7 2 12 12 C 1.46894 * 111.00245 * 85.15463 * 11 9 7 13 13 H 1.08995 * 115.56406 * 9.29955 * 12 11 9 14 14 C 1.53005 * 117.49647 * 223.60601 * 12 11 9 15 15 C 1.52994 * 59.99845 * 252.51154 * 14 12 11 16 16 C 1.52991 * 138.58840 * 229.10277 * 15 14 12 17 17 C 1.52994 * 138.58722 * 130.89130 * 15 14 12 18 18 C 1.50692 * 109.47340 * 120.85033 * 9 7 2 19 19 C 1.38242 * 119.99889 * 75.69620 * 18 9 7 20 20 C 1.38241 * 119.99830 * 179.76636 * 19 18 9 21 21 C 1.38235 * 119.99919 * 0.48559 * 20 19 18 22 22 C 1.38233 * 120.00045 * 359.79286 * 21 20 19 23 23 C 1.38234 * 120.00066 * 359.95388 * 22 21 20 24 24 H 0.96999 * 119.99850 * 0.02562 * 1 2 3 25 25 H 1.00896 * 110.99621 * 321.19546 * 11 9 7 26 26 H 1.09001 * 117.49495 * 145.02451 * 14 12 11 27 27 H 1.09004 * 117.49997 * 0.02562 * 14 12 11 28 28 H 1.09000 * 117.50194 * 336.60570 * 16 15 14 29 29 H 1.09006 * 117.49767 * 121.61935 * 16 15 14 30 30 H 1.09000 * 117.50022 * 238.38455 * 17 15 14 31 31 H 1.08999 * 117.49952 * 23.38373 * 17 15 14 32 32 H 1.07998 * 119.99483 * 0.02562 * 19 18 9 33 33 H 1.08001 * 119.99392 * 180.25678 * 20 19 18 34 34 H 1.07996 * 119.99983 * 179.76829 * 21 20 19 35 35 H 1.08000 * 119.99841 * 179.97438 * 22 21 20 36 36 H 1.08004 * 119.99929 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6057 1.9836 -1.3945 5 1 1.3963 2.6817 0.5882 6 1 3.4880 1.4742 0.8061 7 6 2.0046 -1.1941 -0.0005 8 1 1.4683 -2.1272 0.0881 9 6 3.5065 -1.1969 -0.1246 10 1 3.8678 -0.1705 -0.1877 11 7 3.8962 -1.9286 -1.3374 12 6 3.8671 -1.0502 -2.5144 13 1 3.7267 0.0105 -2.3063 14 6 3.2447 -1.6072 -3.7963 15 6 4.7607 -1.4256 -3.6982 16 6 5.8982 -0.8122 -4.5170 17 6 6.0326 -2.2328 -3.9650 18 6 4.1090 -1.8682 1.0826 19 6 4.0675 -3.2450 1.2005 20 6 4.6245 -3.8611 2.3056 21 6 5.2140 -3.0998 3.2975 22 6 5.2504 -1.7228 3.1823 23 6 4.6981 -1.1070 2.0748 24 1 -0.4850 0.8400 -0.0004 25 1 3.3097 -2.7379 -1.4755 26 1 2.6948 -0.9129 -4.4316 27 1 2.8564 -2.6253 -3.7662 28 1 5.7430 -0.7018 -5.5902 29 1 6.4933 -0.0304 -4.0450 30 1 6.7162 -2.3857 -3.1299 31 1 5.9659 -3.0573 -4.6748 32 1 3.6036 -3.8394 0.4273 33 1 4.5957 -4.9369 2.3957 34 1 5.6458 -3.5809 4.1626 35 1 5.7106 -1.1280 3.9574 36 1 4.7269 -0.0311 1.9846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715235278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:30 Heat of formation + Delta-G solvation = 83.575169 kcal Electronic energy + Delta-G solvation = -17053.381515 eV Core-core repulsion = 14504.063128 eV Total energy + Delta-G solvation = -2549.318388 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.70074 -37.83490 -34.98187 -32.52121 -31.53004 -30.20315 -29.10007 -26.29298 -22.78551 -22.11495 -22.00268 -20.93528 -19.81186 -18.60788 -17.14518 -16.22012 -15.03125 -14.88949 -14.66059 -14.62711 -14.05484 -13.82202 -12.94224 -12.82885 -12.71981 -12.16973 -12.09947 -11.79905 -11.37864 -11.22233 -11.04507 -10.92716 -10.65950 -10.42658 -9.94489 -9.74783 -9.53518 -9.45824 -9.40830 -8.75110 -8.21408 -7.92127 -7.27842 -6.27705 -4.29404 2.11644 2.17821 3.13229 3.22200 3.23731 4.03975 4.22220 4.23922 4.54591 4.74109 5.09319 5.16111 5.32910 5.52561 5.54006 5.58238 5.72254 5.85046 5.97500 6.02413 6.10962 6.13792 6.19634 6.24673 6.25355 6.36185 6.40830 6.43546 6.51919 6.74273 6.83718 7.14882 7.22525 7.36870 7.52196 7.76334 7.95551 8.21493 8.44344 8.77339 9.34007 10.84776 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.010239 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.154100 B = 2733.876907 C = 3933.475884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.082 3.918 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.206 3.794 10 H 0.052 0.948 11 N -0.653 5.653 12 C 0.105 3.895 13 H 0.099 0.901 14 C -0.149 4.149 15 C -0.231 4.231 16 C -0.139 4.139 17 C -0.123 4.123 18 C -0.016 4.016 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.150 4.150 22 C -0.123 4.123 23 C -0.132 4.132 24 H 0.267 0.733 25 H 0.339 0.661 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 -2.778 -2.389 10.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.123 4.123 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.573 4.573 8 H 0.097 0.903 9 C 0.098 3.902 10 H 0.070 0.930 11 N -0.282 5.282 12 C -0.007 4.007 13 H 0.117 0.883 14 C -0.187 4.187 15 C -0.233 4.233 16 C -0.176 4.176 17 C -0.160 4.160 18 C -0.017 4.017 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.169 4.169 22 C -0.141 4.141 23 C -0.151 4.151 24 H 0.077 0.923 25 H 0.158 0.842 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.303 -2.584 -2.245 10.856 hybrid contribution -0.744 1.049 -0.075 1.288 sum 9.559 -1.535 -2.320 9.955 Atomic orbital electron populations 1.69887 1.06280 1.27304 1.48724 1.25071 0.94714 0.98857 0.93646 0.87033 0.80394 0.83966 0.79031 1.19810 1.21134 1.18731 1.21480 0.88966 0.95139 1.51735 0.90347 1.18711 0.94160 0.92795 0.84486 0.93019 1.60617 1.57286 1.09029 1.01246 1.21915 0.97095 0.96528 0.85126 0.88286 1.23142 0.91120 1.02034 1.02444 1.21928 0.88987 1.07175 1.05210 1.22570 1.00100 0.96732 0.98220 1.22420 0.98030 0.93627 1.01957 1.20239 0.91704 0.93484 0.96284 1.20834 0.99509 0.94579 0.97373 1.21017 0.99527 0.98936 0.94867 1.20843 1.02788 0.94032 0.99197 1.20933 1.00721 0.94686 0.97765 1.20991 0.99774 0.99490 0.94840 0.92320 0.84151 0.89314 0.88785 0.89400 0.89235 0.88759 0.89614 0.86741 0.87244 0.87404 0.87273 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.87 20.54 26.42 -169.99 -4.49 16.05 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -5.95 6.24 56.52 0.35 -5.60 16 7 C -0.53 -14.06 8.72 -34.44 -0.30 -14.36 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.21 4.67 2.11 -70.02 -0.15 4.52 16 10 H 0.05 1.22 3.94 -51.93 -0.20 1.01 16 11 N -0.65 -13.31 6.08 -102.19 -0.62 -13.93 16 12 C 0.11 2.05 6.15 -67.72 -0.42 1.64 16 13 H 0.10 2.10 7.00 -51.93 -0.36 1.73 16 14 C -0.15 -2.56 10.23 -26.73 -0.27 -2.84 16 15 C -0.23 -3.86 5.60 -154.52 -0.87 -4.73 16 16 C -0.14 -1.95 10.53 -26.74 -0.28 -2.23 16 17 C -0.12 -1.77 10.53 -26.74 -0.28 -2.05 16 18 C -0.02 -0.34 4.93 -104.63 -0.52 -0.86 16 19 C -0.10 -2.04 9.29 -39.58 -0.37 -2.41 16 20 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 21 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 22 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 23 C -0.13 -2.67 9.67 -39.58 -0.38 -3.05 16 24 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.34 6.83 7.67 -39.29 -0.30 6.53 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.09 1.55 8.09 -51.93 -0.42 1.13 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.11 2.16 7.40 -52.49 -0.39 1.77 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.11 2.21 7.55 -52.48 -0.40 1.81 16 LS Contribution 303.18 15.07 4.57 4.57 Total: -1.00 -28.16 303.18 -9.96 -38.11 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.06 Total: 12.43 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -5.12 Total: -32.19 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.15 Total: -38.98 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.49 Total: 16.05 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.16 -9.96 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715235278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.690 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds