Wall clock time and date at job start Mon Mar 30 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99963 * 2 1 4 4 H 1.48508 * 109.47206 * 264.84352 * 3 2 1 5 5 H 1.48501 * 109.47069 * 24.84159 * 3 2 1 6 6 H 1.48498 * 109.47284 * 144.84490 * 3 2 1 7 7 C 1.37884 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99452 * 354.53681 * 7 2 1 9 9 C 1.50699 * 120.00135 * 174.54606 * 7 2 1 10 10 H 1.09000 * 109.46934 * 0.84750 * 9 7 2 11 11 N 1.46902 * 109.46805 * 240.85550 * 9 7 2 12 12 C 1.46894 * 111.00245 * 85.15463 * 11 9 7 13 13 H 1.08995 * 115.56406 * 9.29955 * 12 11 9 14 14 C 1.53005 * 117.49647 * 223.60601 * 12 11 9 15 15 C 1.52994 * 59.99845 * 252.51154 * 14 12 11 16 16 C 1.52991 * 138.58840 * 229.10277 * 15 14 12 17 17 C 1.52994 * 138.58722 * 130.89130 * 15 14 12 18 18 C 1.50692 * 109.47340 * 120.85033 * 9 7 2 19 19 C 1.38242 * 119.99889 * 75.69620 * 18 9 7 20 20 C 1.38241 * 119.99830 * 179.76636 * 19 18 9 21 21 C 1.38235 * 119.99919 * 0.48559 * 20 19 18 22 22 C 1.38233 * 120.00045 * 359.79286 * 21 20 19 23 23 C 1.38234 * 120.00066 * 359.95388 * 22 21 20 24 24 H 0.96999 * 119.99850 * 0.02562 * 1 2 3 25 25 H 1.00896 * 110.99621 * 321.19546 * 11 9 7 26 26 H 1.09001 * 117.49495 * 145.02451 * 14 12 11 27 27 H 1.09004 * 117.49997 * 0.02562 * 14 12 11 28 28 H 1.09000 * 117.50194 * 336.60570 * 16 15 14 29 29 H 1.09006 * 117.49767 * 121.61935 * 16 15 14 30 30 H 1.09000 * 117.50022 * 238.38455 * 17 15 14 31 31 H 1.08999 * 117.49952 * 23.38373 * 17 15 14 32 32 H 1.07998 * 119.99483 * 0.02562 * 19 18 9 33 33 H 1.08001 * 119.99392 * 180.25678 * 20 19 18 34 34 H 1.07996 * 119.99983 * 179.76829 * 21 20 19 35 35 H 1.08000 * 119.99841 * 179.97438 * 22 21 20 36 36 H 1.08004 * 119.99929 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6057 1.9836 -1.3945 5 1 1.3963 2.6817 0.5882 6 1 3.4880 1.4742 0.8061 7 6 2.0046 -1.1941 -0.0005 8 1 1.4683 -2.1272 0.0881 9 6 3.5065 -1.1969 -0.1246 10 1 3.8678 -0.1705 -0.1877 11 7 3.8962 -1.9286 -1.3374 12 6 3.8671 -1.0502 -2.5144 13 1 3.7267 0.0105 -2.3063 14 6 3.2447 -1.6072 -3.7963 15 6 4.7607 -1.4256 -3.6982 16 6 5.8982 -0.8122 -4.5170 17 6 6.0326 -2.2328 -3.9650 18 6 4.1090 -1.8682 1.0826 19 6 4.0675 -3.2450 1.2005 20 6 4.6245 -3.8611 2.3056 21 6 5.2140 -3.0998 3.2975 22 6 5.2504 -1.7228 3.1823 23 6 4.6981 -1.1070 2.0748 24 1 -0.4850 0.8400 -0.0004 25 1 3.3097 -2.7379 -1.4755 26 1 2.6948 -0.9129 -4.4316 27 1 2.8564 -2.6253 -3.7662 28 1 5.7430 -0.7018 -5.5902 29 1 6.4933 -0.0304 -4.0450 30 1 6.7162 -2.3857 -3.1299 31 1 5.9659 -3.0573 -4.6748 32 1 3.6036 -3.8394 0.4273 33 1 4.5957 -4.9369 2.3957 34 1 5.6458 -3.5809 4.1626 35 1 5.7106 -1.1280 3.9574 36 1 4.7269 -0.0311 1.9846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715235278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:30 Heat of formation + Delta-G solvation = 67.963328 kcal Electronic energy + Delta-G solvation = -17054.058496 eV Core-core repulsion = 14504.063128 eV Total energy + Delta-G solvation = -2549.995368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18841 -39.18469 -36.57153 -34.36464 -33.09002 -31.62607 -30.56089 -28.18140 -24.48855 -23.47968 -23.21711 -22.38239 -21.42265 -19.97394 -19.14434 -17.63241 -16.83553 -16.30143 -16.28400 -15.78526 -15.48011 -15.27904 -14.83214 -14.46692 -14.13366 -13.79319 -13.64334 -13.51295 -12.98044 -12.77347 -12.42298 -12.29054 -12.15779 -11.93107 -11.82164 -11.32374 -11.17104 -10.96712 -10.75523 -10.66182 -9.64307 -9.41469 -8.90926 -8.39473 -6.43380 0.67533 0.73547 1.22930 1.26212 1.34157 2.22212 2.72242 2.90495 2.97976 3.16653 3.39665 3.76803 4.01246 4.13938 4.17946 4.29012 4.38788 4.52662 4.55494 4.67155 4.74212 4.79105 4.85650 4.88044 4.90352 4.93067 5.05124 5.07624 5.29240 5.34511 5.37655 5.41439 5.74595 5.78635 5.96992 6.05074 6.31415 6.41469 6.61850 6.69912 7.23326 8.76714 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.010239 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.154100 B = 2733.876907 C = 3933.475884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.029 3.971 3 Si 0.923 3.077 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.527 4.527 8 H 0.039 0.961 9 C 0.215 3.785 10 H 0.042 0.958 11 N -0.642 5.642 12 C 0.068 3.932 13 H 0.077 0.923 14 C -0.145 4.145 15 C -0.240 4.240 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.049 4.049 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.121 4.121 23 C -0.155 4.155 24 H 0.267 0.733 25 H 0.335 0.665 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.537 -3.270 -2.145 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.171 4.171 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.566 4.566 8 H 0.057 0.943 9 C 0.107 3.893 10 H 0.060 0.940 11 N -0.270 5.270 12 C -0.043 4.043 13 H 0.095 0.905 14 C -0.183 4.183 15 C -0.242 4.242 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.050 4.050 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.159 4.159 22 C -0.139 4.139 23 C -0.174 4.174 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.053 -3.082 -2.013 13.562 hybrid contribution -1.534 1.069 -0.127 1.874 sum 11.519 -2.013 -2.140 11.888 Atomic orbital electron populations 1.70023 1.07955 1.28094 1.51360 1.25797 0.95311 1.02269 0.93676 0.86133 0.79584 0.79828 0.79646 1.18873 1.21079 1.17269 1.21628 0.91187 0.93407 1.50358 0.94313 1.18520 0.91571 0.92948 0.86302 0.93987 1.60670 1.56571 1.08689 1.01049 1.21917 1.01206 0.95353 0.85816 0.90517 1.23114 0.92346 1.02078 1.00809 1.21965 0.89368 1.10023 1.02802 1.22774 0.97438 0.96622 0.99174 1.22572 0.95672 0.94661 1.02162 1.20221 0.93958 0.94593 0.96245 1.20938 1.00404 0.94008 0.98654 1.21397 0.98199 1.00735 0.93842 1.21335 1.01131 0.93666 0.99805 1.21310 0.99627 0.95687 0.97287 1.21134 1.00967 0.99379 0.95873 0.92373 0.84612 0.88773 0.88511 0.87061 0.88654 0.88995 0.87552 0.87264 0.84125 0.83394 0.84099 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.96 21.45 0.30 -56.72 16 2 C 0.03 1.67 5.47 84.66 0.46 2.13 16 3 Si 0.92 43.54 26.42 68.60 1.81 45.36 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.25 -11.04 6.24 99.48 0.62 -10.42 16 7 C -0.53 -29.08 8.72 25.60 0.22 -28.86 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 9 C 0.21 10.05 2.11 43.42 0.09 10.14 16 10 H 0.04 2.02 3.94 -2.39 -0.01 2.01 16 11 N -0.64 -26.90 6.08 -477.21 -2.90 -29.80 16 12 C 0.07 2.72 6.15 44.92 0.28 2.99 16 13 H 0.08 3.35 7.00 -2.39 -0.02 3.33 16 14 C -0.15 -4.98 10.23 30.59 0.31 -4.67 16 15 C -0.24 -7.71 5.60 -52.19 -0.29 -8.00 16 16 C -0.12 -3.09 10.53 30.59 0.32 -2.77 16 17 C -0.11 -2.97 10.53 30.59 0.32 -2.65 16 18 C -0.05 -2.13 4.93 -19.87 -0.10 -2.22 16 19 C -0.12 -4.73 9.29 22.27 0.21 -4.53 16 20 C -0.12 -3.94 10.05 22.27 0.22 -3.71 16 21 C -0.14 -4.12 10.05 22.27 0.22 -3.89 16 22 C -0.12 -3.88 10.05 22.27 0.22 -3.66 16 23 C -0.15 -6.14 9.67 22.27 0.22 -5.92 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.34 14.12 7.67 -89.70 -0.69 13.44 16 26 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.10 3.21 8.09 -2.39 -0.02 3.19 16 28 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.11 4.22 7.40 -2.91 -0.02 4.20 16 33 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.10 4.15 7.55 -2.91 -0.02 4.13 16 Total: -1.00 -63.42 303.18 2.22 -61.20 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: 0.30 Total: 35.58 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 2.71 Total: -55.62 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -2.60 Total: -86.52 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.81 Total: 45.36 kcal Total: -63.42 2.22 -61.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715235278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.167 kcal (2) G-P(sol) polarization free energy of solvation -63.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds