Wall clock time and date at job start Mon Mar 30 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99843 * 2 1 4 4 H 1.48495 * 109.47275 * 240.00330 * 3 2 1 5 5 H 1.48503 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47005 * 120.00601 * 3 2 1 7 7 C 1.37880 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99445 * 182.52436 * 7 2 1 9 9 C 1.50695 * 120.00074 * 2.51711 * 7 2 1 10 10 H 1.08998 * 109.47176 * 174.79555 * 9 7 2 11 11 N 1.46904 * 109.46856 * 54.79886 * 9 7 2 12 12 C 1.46902 * 110.99936 * 84.99979 * 11 9 7 13 13 H 1.09001 * 115.54769 * 350.58426 * 12 11 9 14 14 C 1.53004 * 117.49980 * 136.25126 * 12 11 9 15 15 C 1.52991 * 117.50096 * 204.90767 * 12 11 9 16 16 C 1.52994 * 138.58698 * 121.61191 * 15 12 11 17 17 C 1.52999 * 138.58466 * 23.40444 * 15 12 11 18 18 C 1.50698 * 109.47480 * 294.80142 * 9 7 2 19 19 C 1.38237 * 120.00241 * 90.49889 * 18 9 7 20 20 C 1.38228 * 120.00054 * 180.02562 * 19 18 9 21 21 C 1.38241 * 120.00085 * 0.25914 * 20 19 18 22 22 C 1.38239 * 119.99721 * 359.48578 * 21 20 19 23 23 C 1.38231 * 119.99666 * 0.49551 * 22 21 20 24 24 H 0.96999 * 119.99868 * 359.97438 * 1 2 3 25 25 H 1.00899 * 111.00166 * 321.04634 * 11 9 7 26 26 H 1.08998 * 117.49700 * 214.98029 * 14 12 11 27 27 H 1.08995 * 117.49834 * 0.02562 * 14 12 11 28 28 H 1.09005 * 117.50294 * 336.60467 * 16 15 12 29 29 H 1.08999 * 117.49578 * 121.62653 * 16 15 12 30 30 H 1.08991 * 117.50148 * 238.38003 * 17 15 12 31 31 H 1.09006 * 117.50005 * 23.38500 * 17 15 12 32 32 H 1.08000 * 119.99762 * 359.97438 * 19 18 9 33 33 H 1.08004 * 120.00087 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.99661 * 179.72768 * 21 20 19 35 35 H 1.07999 * 119.99946 * 180.25072 * 22 21 20 36 36 H 1.08004 * 119.99752 * 179.76299 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0838 -1.1945 0.0407 9 6 1.2522 -2.4985 -0.0584 10 1 1.9602 -3.3229 -0.1433 11 7 0.3597 -2.4975 -1.2253 12 6 1.0738 -2.9283 -2.4346 13 1 2.1549 -3.0232 -2.3334 14 6 0.3616 -3.9153 -3.3618 15 6 0.5295 -2.4534 -3.7833 16 6 1.0096 -1.6574 -4.9984 17 6 -0.3269 -1.3133 -4.3378 18 6 0.4364 -2.6641 1.1978 19 6 -0.8628 -2.1944 1.2452 20 6 -1.6109 -2.3459 2.3977 21 6 -1.0580 -2.9623 3.5046 22 6 0.2395 -3.4368 3.4554 23 6 0.9874 -3.2856 2.3028 24 1 -0.4850 0.8400 0.0004 25 1 -0.0613 -1.5902 -1.3578 26 1 0.9743 -4.6593 -3.8708 27 1 -0.6369 -4.2447 -3.0746 28 1 1.8375 -0.9638 -4.8507 29 1 0.9785 -2.1528 -5.9688 30 1 -1.2371 -1.5822 -4.8736 31 1 -0.3786 -0.3933 -3.7553 32 1 -1.2931 -1.7083 0.3821 33 1 -2.6259 -1.9785 2.4349 34 1 -1.6410 -3.0767 4.4065 35 1 0.6702 -3.9220 4.3188 36 1 2.0024 -3.6529 2.2656 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715235281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:33 Heat of formation + Delta-G solvation = 87.598945 kcal Electronic energy + Delta-G solvation = -17346.078698 eV Core-core repulsion = 14796.934794 eV Total energy + Delta-G solvation = -2549.143904 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.34423 -37.57407 -34.84358 -32.31532 -30.90696 -29.72920 -28.74279 -26.09462 -22.79665 -21.96309 -21.45174 -20.40128 -19.76844 -18.53653 -16.53120 -15.84873 -15.12328 -14.60467 -14.53867 -14.29590 -13.74176 -13.50910 -13.02617 -12.28374 -12.19711 -11.73339 -11.59082 -11.45967 -11.12035 -11.08990 -10.97310 -10.73982 -10.48989 -10.11937 -9.93857 -9.53856 -9.45867 -9.39773 -9.11713 -8.70577 -7.76891 -7.40628 -7.02528 -6.06553 -4.34027 2.55311 2.66790 3.20534 3.25889 3.28874 4.21179 4.27163 4.41492 4.93342 4.99057 5.11618 5.28313 5.49581 5.85574 5.90966 5.98374 6.01384 6.11053 6.12081 6.27752 6.32650 6.35064 6.37457 6.50116 6.58359 6.70691 6.74792 6.86855 6.92230 7.18723 7.33093 7.56568 7.64323 7.80645 7.96895 8.07322 8.27814 8.40815 8.81212 9.05873 9.38581 10.78169 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.009623 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.087569 B = 2909.073448 C = 3855.849129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.238 3.762 10 H 0.038 0.962 11 N -0.656 5.656 12 C 0.103 3.897 13 H 0.089 0.911 14 C -0.134 4.134 15 C -0.244 4.244 16 C -0.139 4.139 17 C -0.127 4.127 18 C -0.018 4.018 19 C -0.052 4.052 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.134 4.134 24 H 0.267 0.733 25 H 0.371 0.629 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -3.576 -3.076 4.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.076 0.924 9 C 0.130 3.870 10 H 0.056 0.944 11 N -0.293 5.293 12 C -0.009 4.009 13 H 0.107 0.893 14 C -0.173 4.173 15 C -0.246 4.246 16 C -0.176 4.176 17 C -0.164 4.164 18 C -0.020 4.020 19 C -0.070 4.070 20 C -0.166 4.166 21 C -0.171 4.171 22 C -0.162 4.162 23 C -0.153 4.153 24 H 0.078 0.922 25 H 0.200 0.800 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.161 0.839 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.476 -4.020 -2.924 5.185 hybrid contribution 1.041 1.884 0.015 2.152 sum -0.435 -2.136 -2.909 3.635 Atomic orbital electron populations 1.69581 1.05603 1.27028 1.49453 1.24978 0.94953 0.99183 0.93858 0.86630 0.79760 0.82857 0.78702 1.20249 1.21037 1.20192 1.21679 0.93511 0.91092 1.51645 0.92425 1.18167 0.88840 0.94672 0.85369 0.94417 1.60662 1.31387 1.36786 1.00478 1.22020 0.95294 0.98210 0.85329 0.89300 1.22982 1.02296 0.89333 1.02664 1.21895 1.07304 0.96264 0.99105 1.22550 0.98129 1.02072 0.94878 1.22441 0.93766 0.98169 1.02031 1.20142 0.93699 0.92248 0.95864 1.21318 0.93634 0.94267 0.97818 1.21085 0.99313 1.01579 0.94642 1.20761 0.95870 1.02513 0.97954 1.20739 0.95049 1.02905 0.97521 1.20828 0.98922 1.01742 0.93801 0.92199 0.80037 0.89860 0.88901 0.89252 0.89600 0.89519 0.88761 0.83893 0.88154 0.88360 0.88152 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.25 7.97 55.43 0.44 -21.81 16 2 C 0.07 1.87 5.05 -17.82 -0.09 1.78 16 3 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -13.92 8.74 -34.44 -0.30 -14.22 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.24 5.70 2.40 -70.02 -0.17 5.53 16 10 H 0.04 0.89 7.68 -51.93 -0.40 0.49 16 11 N -0.66 -14.90 5.64 -102.18 -0.58 -15.48 16 12 C 0.10 2.10 6.01 -67.71 -0.41 1.69 16 13 H 0.09 1.84 7.77 -51.93 -0.40 1.43 16 14 C -0.13 -2.32 10.46 -26.70 -0.28 -2.60 16 15 C -0.24 -4.43 5.48 -154.48 -0.85 -5.28 16 16 C -0.14 -2.18 10.53 -26.73 -0.28 -2.46 16 17 C -0.13 -2.13 10.53 -26.73 -0.28 -2.41 16 18 C -0.02 -0.43 4.79 -104.63 -0.50 -0.94 16 19 C -0.05 -1.21 7.66 -39.59 -0.30 -1.51 16 20 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 21 C -0.15 -2.98 10.05 -39.58 -0.40 -3.38 16 22 C -0.14 -2.84 10.05 -39.58 -0.40 -3.23 16 23 C -0.13 -2.91 9.70 -39.59 -0.38 -3.30 16 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.37 9.01 5.48 -39.29 -0.22 8.79 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 32 H 0.14 3.51 5.59 -52.49 -0.29 3.21 16 33 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 299.71 15.07 4.52 4.52 Total: -1.00 -25.74 299.71 -10.76 -36.50 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -5.08 Total: 14.70 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -5.04 Total: -33.82 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.13 Total: -37.29 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.74 -10.76 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715235281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.100 kcal (2) G-P(sol) polarization free energy of solvation -25.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds