Wall clock time and date at job start Mon Mar 30 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99843 * 2 1 4 4 H 1.48495 * 109.47275 * 240.00330 * 3 2 1 5 5 H 1.48503 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47005 * 120.00601 * 3 2 1 7 7 C 1.37880 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99445 * 182.52436 * 7 2 1 9 9 C 1.50695 * 120.00074 * 2.51711 * 7 2 1 10 10 H 1.08998 * 109.47176 * 174.79555 * 9 7 2 11 11 N 1.46904 * 109.46856 * 54.79886 * 9 7 2 12 12 C 1.46902 * 110.99936 * 84.99979 * 11 9 7 13 13 H 1.09001 * 115.54769 * 350.58426 * 12 11 9 14 14 C 1.53004 * 117.49980 * 136.25126 * 12 11 9 15 15 C 1.52991 * 117.50096 * 204.90767 * 12 11 9 16 16 C 1.52994 * 138.58698 * 121.61191 * 15 12 11 17 17 C 1.52999 * 138.58466 * 23.40444 * 15 12 11 18 18 C 1.50698 * 109.47480 * 294.80142 * 9 7 2 19 19 C 1.38237 * 120.00241 * 90.49889 * 18 9 7 20 20 C 1.38228 * 120.00054 * 180.02562 * 19 18 9 21 21 C 1.38241 * 120.00085 * 0.25914 * 20 19 18 22 22 C 1.38239 * 119.99721 * 359.48578 * 21 20 19 23 23 C 1.38231 * 119.99666 * 0.49551 * 22 21 20 24 24 H 0.96999 * 119.99868 * 359.97438 * 1 2 3 25 25 H 1.00899 * 111.00166 * 321.04634 * 11 9 7 26 26 H 1.08998 * 117.49700 * 214.98029 * 14 12 11 27 27 H 1.08995 * 117.49834 * 0.02562 * 14 12 11 28 28 H 1.09005 * 117.50294 * 336.60467 * 16 15 12 29 29 H 1.08999 * 117.49578 * 121.62653 * 16 15 12 30 30 H 1.08991 * 117.50148 * 238.38003 * 17 15 12 31 31 H 1.09006 * 117.50005 * 23.38500 * 17 15 12 32 32 H 1.08000 * 119.99762 * 359.97438 * 19 18 9 33 33 H 1.08004 * 120.00087 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.99661 * 179.72768 * 21 20 19 35 35 H 1.07999 * 119.99946 * 180.25072 * 22 21 20 36 36 H 1.08004 * 119.99752 * 179.76299 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0838 -1.1945 0.0407 9 6 1.2522 -2.4985 -0.0584 10 1 1.9602 -3.3229 -0.1433 11 7 0.3597 -2.4975 -1.2253 12 6 1.0738 -2.9283 -2.4346 13 1 2.1549 -3.0232 -2.3334 14 6 0.3616 -3.9153 -3.3618 15 6 0.5295 -2.4534 -3.7833 16 6 1.0096 -1.6574 -4.9984 17 6 -0.3269 -1.3133 -4.3378 18 6 0.4364 -2.6641 1.1978 19 6 -0.8628 -2.1944 1.2452 20 6 -1.6109 -2.3459 2.3977 21 6 -1.0580 -2.9623 3.5046 22 6 0.2395 -3.4368 3.4554 23 6 0.9874 -3.2856 2.3028 24 1 -0.4850 0.8400 0.0004 25 1 -0.0613 -1.5902 -1.3578 26 1 0.9743 -4.6593 -3.8708 27 1 -0.6369 -4.2447 -3.0746 28 1 1.8375 -0.9638 -4.8507 29 1 0.9785 -2.1528 -5.9688 30 1 -1.2371 -1.5822 -4.8736 31 1 -0.3786 -0.3933 -3.7553 32 1 -1.2931 -1.7083 0.3821 33 1 -2.6259 -1.9785 2.4349 34 1 -1.6410 -3.0767 4.4065 35 1 0.6702 -3.9220 4.3188 36 1 2.0024 -3.6529 2.2656 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715235281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:32 Heat of formation + Delta-G solvation = 76.150994 kcal Electronic energy + Delta-G solvation = -17346.575118 eV Core-core repulsion = 14796.934794 eV Total energy + Delta-G solvation = -2549.640324 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98530 -39.04532 -36.54407 -33.97391 -32.60609 -31.36870 -30.35837 -27.96201 -24.57446 -23.26391 -23.08111 -21.92261 -21.48259 -19.99886 -18.43636 -17.45876 -16.91582 -16.13353 -16.05726 -15.77115 -15.36687 -15.11496 -14.81630 -13.90823 -13.81452 -13.50538 -13.24410 -13.15454 -12.81827 -12.64988 -12.45723 -12.36385 -12.26312 -11.84429 -11.55721 -11.28603 -10.97361 -10.84404 -10.65894 -10.53252 -9.41983 -9.10999 -8.76988 -7.95679 -6.32850 0.88848 1.03068 1.35743 1.38108 1.43687 2.36550 2.84293 2.97654 3.08924 3.39212 3.53922 3.77450 4.12227 4.35681 4.40279 4.47271 4.63888 4.71044 4.74414 4.79954 4.82199 4.90849 4.93406 4.97302 5.02932 5.18755 5.23019 5.26409 5.31262 5.52915 5.63367 5.70535 5.92574 6.06523 6.09644 6.37531 6.51013 6.60900 6.97058 7.19486 7.42049 8.82362 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.009623 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.087569 B = 2909.073448 C = 3855.849129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.561 4.561 8 H 0.043 0.957 9 C 0.240 3.760 10 H 0.027 0.973 11 N -0.657 5.657 12 C 0.066 3.934 13 H 0.075 0.925 14 C -0.109 4.109 15 C -0.264 4.264 16 C -0.118 4.118 17 C -0.130 4.130 18 C -0.045 4.045 19 C -0.071 4.071 20 C -0.155 4.155 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.151 4.151 24 H 0.266 0.734 25 H 0.359 0.641 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -3.953 -2.962 5.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.160 4.160 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.600 4.600 8 H 0.061 0.939 9 C 0.131 3.869 10 H 0.045 0.955 11 N -0.291 5.291 12 C -0.045 4.045 13 H 0.093 0.907 14 C -0.147 4.147 15 C -0.265 4.265 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.046 4.046 19 C -0.090 4.090 20 C -0.173 4.173 21 C -0.166 4.166 22 C -0.158 4.158 23 C -0.170 4.170 24 H 0.076 0.924 25 H 0.185 0.815 26 H 0.127 0.873 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.048 -4.415 -2.819 5.624 hybrid contribution 1.214 1.969 0.006 2.313 sum -0.834 -2.445 -2.813 3.820 Atomic orbital electron populations 1.69718 1.05998 1.27173 1.49054 1.25456 0.95688 1.01111 0.93780 0.85883 0.78770 0.80309 0.78246 1.20216 1.20480 1.20661 1.21809 0.92997 0.92547 1.52668 0.93868 1.18083 0.88941 0.93404 0.86504 0.95492 1.60696 1.31407 1.35882 1.01162 1.22067 0.94815 1.01763 0.85871 0.90748 1.22943 1.01925 0.89359 1.00437 1.22059 1.08746 0.97138 0.98575 1.22676 0.97058 1.00697 0.95074 1.22511 0.95410 0.96742 1.02039 1.20238 0.94217 0.93859 0.96287 1.21210 0.93991 0.95445 0.98368 1.21365 1.00158 1.01477 0.94317 1.21184 0.96000 1.00798 0.98628 1.21142 0.95034 1.01948 0.97684 1.21064 0.99665 1.02026 0.94245 0.92384 0.81454 0.87268 0.89126 0.89639 0.86449 0.87298 0.90783 0.85903 0.86145 0.84613 0.84675 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.67 7.97 21.45 0.17 -45.50 16 2 C 0.04 2.18 5.05 84.65 0.43 2.61 16 3 Si 0.94 42.44 29.54 68.60 2.03 44.47 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.56 -29.99 8.74 25.60 0.22 -29.76 16 8 H 0.04 2.35 7.81 -2.91 -0.02 2.32 16 9 C 0.24 11.95 2.40 43.42 0.10 12.06 16 10 H 0.03 1.34 7.68 -2.39 -0.02 1.32 16 11 N -0.66 -30.94 5.64 -477.19 -2.69 -33.63 16 12 C 0.07 2.75 6.01 44.91 0.27 3.02 16 13 H 0.07 3.23 7.77 -2.39 -0.02 3.21 16 14 C -0.11 -3.65 10.46 30.62 0.32 -3.33 16 15 C -0.26 -9.41 5.48 -52.17 -0.29 -9.69 16 16 C -0.12 -3.48 10.53 30.59 0.32 -3.15 16 17 C -0.13 -4.23 10.53 30.60 0.32 -3.91 16 18 C -0.04 -2.17 4.79 -19.87 -0.10 -2.26 16 19 C -0.07 -3.36 7.66 22.27 0.17 -3.19 16 20 C -0.16 -6.28 10.05 22.27 0.22 -6.06 16 21 C -0.15 -5.35 10.05 22.27 0.22 -5.13 16 22 C -0.14 -5.19 10.05 22.27 0.22 -4.96 16 23 C -0.15 -6.54 9.70 22.27 0.22 -6.32 16 24 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 25 H 0.36 18.14 5.48 -89.69 -0.49 17.65 16 26 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.12 6.22 5.59 -2.91 -0.02 6.21 16 33 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 34 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 35 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -55.93 299.71 2.75 -53.18 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: 0.57 Total: 41.57 kcal Atomic # 6 Polarization: -62.75 SS G_CDS: 2.67 Total: -60.08 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -2.52 Total: -79.13 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -55.93 2.75 -53.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715235281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.335 kcal (2) G-P(sol) polarization free energy of solvation -55.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds