Wall clock time and date at job start Mon Mar 30 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47305 * 274.51893 * 3 2 1 5 5 H 1.48502 * 109.47201 * 34.52396 * 3 2 1 6 6 H 1.48507 * 109.46854 * 154.52049 * 3 2 1 7 7 C 1.39941 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00148 * 162.20797 * 7 2 1 9 9 C 1.41397 * 120.00117 * 342.49004 * 7 2 1 10 10 C 1.40717 * 120.24284 * 334.66443 * 9 7 2 11 11 C 1.37618 * 119.74540 * 179.74021 * 10 9 7 12 12 C 1.38633 * 120.24562 * 0.53587 * 11 10 9 13 13 C 1.50699 * 119.75180 * 179.69646 * 12 11 10 14 14 N 1.46897 * 109.47237 * 270.02056 * 13 12 11 15 15 C 1.46903 * 111.00254 * 179.97438 * 14 13 12 16 16 H 1.08998 * 115.54971 * 9.32697 * 15 14 13 17 17 C 1.53000 * 117.49940 * 223.61723 * 15 14 13 18 18 C 1.52987 * 59.99857 * 252.51066 * 17 15 14 19 19 C 1.52999 * 138.58688 * 130.89008 * 18 17 15 20 20 C 1.52996 * 138.58864 * 229.10208 * 18 17 15 21 21 C 1.38634 * 120.50628 * 359.71271 * 12 11 10 22 22 C 1.37621 * 120.24664 * 0.02562 * 21 12 11 23 23 H 0.96999 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.12568 * 359.96793 * 10 9 7 25 25 H 1.07997 * 119.88044 * 180.22646 * 11 10 9 26 26 H 1.09007 * 109.46786 * 30.01544 * 13 12 11 27 27 H 1.09001 * 109.47558 * 150.01266 * 13 12 11 28 28 H 1.00903 * 110.99991 * 303.95068 * 14 13 12 29 29 H 1.09001 * 117.50118 * 0.02562 * 17 15 14 30 30 H 1.08997 * 117.49788 * 145.02248 * 17 15 14 31 31 H 1.08999 * 117.50014 * 238.38259 * 19 18 17 32 32 H 1.09003 * 117.49629 * 23.40951 * 19 18 17 33 33 H 1.08997 * 117.49847 * 336.60324 * 20 18 17 34 34 H 1.09007 * 117.49441 * 121.59870 * 20 18 17 35 35 H 1.07998 * 119.87965 * 180.02562 * 21 12 11 36 36 H 1.08002 * 120.13117 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3942 2.1016 -1.3957 5 1 1.4907 2.6232 0.7935 6 1 3.5844 1.4145 0.6023 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2342 -0.2863 9 6 1.3502 -2.4083 0.3673 10 6 0.2266 -2.3679 1.2134 11 6 -0.4091 -3.5381 1.5606 12 6 0.0604 -4.7543 1.0891 13 6 -0.6401 -6.0294 1.4819 14 7 -0.0441 -6.5549 2.7174 15 6 -0.7038 -7.8004 3.1319 16 1 -1.3994 -8.2269 2.4092 17 6 -1.0386 -7.9624 4.6160 18 6 0.1015 -8.7726 3.9961 19 6 1.5660 -9.1036 4.2903 20 6 0.5827 -10.2241 3.9462 21 6 1.1697 -4.8065 0.2592 22 6 1.8179 -3.6485 -0.1054 23 1 -0.4850 0.8401 0.0004 24 1 -0.1378 -1.4219 1.5859 25 1 -1.2739 -3.5093 2.2069 26 1 -1.6984 -5.8267 1.6466 27 1 -0.5308 -6.7645 0.6845 28 1 0.9500 -6.6904 2.6103 29 1 -0.7698 -7.1448 5.2848 30 1 -1.9547 -8.4956 4.8700 31 1 2.3046 -8.8328 3.5358 32 1 1.9010 -9.0281 5.3248 33 1 0.2707 -10.8858 4.7542 34 1 0.6739 -10.6905 2.9652 35 1 1.5266 -5.7594 -0.1026 36 1 2.6821 -3.6914 -0.7516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715372766.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:18 Heat of formation + Delta-G solvation = 70.065907 kcal Electronic energy + Delta-G solvation = -16186.703492 eV Core-core repulsion = 13636.799298 eV Total energy + Delta-G solvation = -2549.904193 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.55486 -37.56164 -34.87785 -33.49197 -31.60282 -29.51947 -29.13412 -26.08396 -23.18588 -22.47316 -21.14501 -20.93060 -19.94561 -19.09924 -17.27825 -15.72794 -15.36671 -15.17528 -15.01000 -14.23719 -14.12615 -13.65369 -13.28252 -12.58465 -12.37361 -11.98653 -11.87449 -11.61594 -11.52338 -11.48464 -11.06380 -10.96890 -10.49008 -10.42473 -10.26371 -10.03131 -9.83856 -9.54841 -9.35218 -9.11574 -7.95443 -7.42390 -7.29125 -6.75075 -4.33767 2.74884 3.07552 3.09729 3.11577 3.18623 3.64376 3.75109 3.94226 4.28053 4.44168 4.70756 4.89960 5.26844 5.48918 5.51421 5.57189 5.65441 5.73836 5.78732 5.82636 5.89786 5.92662 6.04271 6.14939 6.27898 6.37589 6.47554 6.97551 7.08778 7.30959 7.37185 7.44277 7.63006 7.70875 7.90355 8.07374 8.16452 8.31872 8.66311 8.91078 8.99586 10.19840 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.047466 B = 0.004040 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.760307 B = 6929.167188 C = 7058.427721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.167 4.167 11 C -0.078 4.078 12 C -0.215 4.215 13 C 0.125 3.875 14 N -0.652 5.652 15 C 0.074 3.926 16 H 0.096 0.904 17 C -0.119 4.119 18 C -0.246 4.246 19 C -0.127 4.127 20 C -0.135 4.135 21 C -0.085 4.085 22 C -0.228 4.228 23 H 0.280 0.720 24 H 0.116 0.884 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.020 0.980 28 H 0.343 0.657 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -11.656 5.521 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.186 4.186 11 C -0.097 4.097 12 C -0.217 4.217 13 C -0.002 4.002 14 N -0.283 5.283 15 C -0.037 4.037 16 H 0.113 0.887 17 C -0.158 4.158 18 C -0.248 4.248 19 C -0.164 4.164 20 C -0.172 4.172 21 C -0.104 4.104 22 C -0.247 4.247 23 H 0.091 0.909 24 H 0.134 0.866 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.163 0.837 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.272 -11.078 5.893 12.612 hybrid contribution 0.669 0.166 -0.691 0.976 sum -0.603 -10.913 5.202 12.104 Atomic orbital electron populations 1.69834 1.07587 1.29174 1.35226 1.25906 0.94710 1.01291 0.92231 0.86332 0.80797 0.80771 0.79010 1.19619 1.20028 1.18429 1.19595 0.98054 0.91297 1.40417 0.90508 1.17626 0.91011 0.91960 0.88292 1.21293 0.99449 0.96744 1.01128 1.20502 0.98294 0.92494 0.98383 1.18880 1.01640 0.92916 1.08221 1.20625 0.97796 0.93815 0.87966 1.60410 1.07922 1.24800 1.35175 1.22247 0.98519 0.89528 0.93419 0.88669 1.22929 0.95897 0.99909 0.97019 1.21919 0.96407 0.97087 1.09350 1.22541 0.90462 1.01269 1.02119 1.22629 1.02577 0.89644 1.02332 1.20358 0.95616 0.96243 0.98162 1.20935 1.03826 0.92992 1.06985 0.90904 0.86616 0.89411 0.91723 0.96201 0.83685 0.88157 0.89033 0.88744 0.88762 0.88918 0.88998 0.89948 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.67 11.00 55.55 0.61 -20.06 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.11 3.06 5.57 -106.82 -0.59 2.47 16 10 C -0.17 -4.39 8.69 -38.87 -0.34 -4.73 16 11 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 12 C -0.21 -4.70 5.41 -104.33 -0.56 -5.26 16 13 C 0.13 2.25 5.65 -4.98 -0.03 2.22 16 14 N -0.65 -10.75 6.73 -107.99 -0.73 -11.48 16 15 C 0.07 1.02 6.26 -67.72 -0.42 0.59 16 16 H 0.10 1.25 7.90 -51.93 -0.41 0.84 16 17 C -0.12 -1.49 10.46 -26.74 -0.28 -1.77 16 18 C -0.25 -3.03 5.47 -154.52 -0.85 -3.87 16 19 C -0.13 -1.39 10.53 -26.73 -0.28 -1.67 16 20 C -0.13 -1.36 10.53 -26.73 -0.28 -1.64 16 21 C -0.08 -1.90 9.67 -39.66 -0.38 -2.29 16 22 C -0.23 -5.64 9.80 -38.87 -0.38 -6.03 16 23 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 24 H 0.12 3.15 6.22 -52.49 -0.33 2.82 16 25 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 26 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.34 5.71 8.68 -39.29 -0.34 5.37 16 29 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.63 8.06 -52.49 -0.42 1.20 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -27.20 308.72 -10.98 -38.19 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.27 Total: 10.12 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: -5.22 Total: -35.15 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: -0.12 Total: -31.53 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.20 -10.98 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715372766.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.251 kcal (2) G-P(sol) polarization free energy of solvation -27.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds