Wall clock time and date at job start Mon Mar 30 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48493 * 109.47312 * 269.99387 * 3 2 1 5 5 H 1.48508 * 109.47266 * 29.99284 * 3 2 1 6 6 H 1.48505 * 109.47500 * 149.99298 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00349 * 197.73374 * 7 2 1 9 9 C 1.41402 * 119.99691 * 17.72961 * 7 2 1 10 10 C 1.40712 * 120.24255 * 204.29260 * 9 7 2 11 11 C 1.37619 * 119.74491 * 179.70282 * 10 9 7 12 12 C 1.38633 * 120.24810 * 0.27116 * 11 10 9 13 13 C 1.50703 * 119.75264 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47184 * 90.00078 * 13 12 11 15 15 C 1.46899 * 111.00206 * 180.02562 * 14 13 12 16 16 H 1.09008 * 115.54947 * 350.72723 * 15 14 13 17 17 C 1.53003 * 117.49987 * 136.38855 * 15 14 13 18 18 C 1.52990 * 59.99879 * 107.49393 * 17 15 14 19 19 C 1.52992 * 138.59226 * 130.89080 * 18 17 15 20 20 C 1.52999 * 138.59237 * 229.11232 * 18 17 15 21 21 C 1.38638 * 120.50174 * 0.02562 * 12 11 10 22 22 C 1.37617 * 120.24810 * 359.97438 * 21 12 11 23 23 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.12832 * 359.97108 * 10 9 7 25 25 H 1.07997 * 119.88035 * 180.30166 * 11 10 9 26 26 H 1.09002 * 109.47196 * 210.00250 * 13 12 11 27 27 H 1.09004 * 109.46549 * 329.99855 * 13 12 11 28 28 H 1.00900 * 111.00423 * 56.04629 * 14 13 12 29 29 H 1.09000 * 117.50217 * 214.98228 * 17 15 14 30 30 H 1.09003 * 117.49843 * 359.97438 * 17 15 14 31 31 H 1.09004 * 117.49905 * 238.38808 * 19 18 17 32 32 H 1.09002 * 117.49712 * 23.40399 * 19 18 17 33 33 H 1.08996 * 117.49190 * 336.58749 * 20 18 17 34 34 H 1.08999 * 117.50212 * 121.58990 * 20 18 17 35 35 H 1.08001 * 119.87964 * 179.97438 * 21 12 11 36 36 H 1.07999 * 120.12808 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4402 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2341 0.2854 9 6 1.3514 -2.4076 -0.3718 10 6 1.8271 -3.6499 0.0868 11 6 1.1765 -4.8067 -0.2769 12 6 0.0598 -4.7517 -1.0966 13 6 -0.6437 -6.0255 -1.4885 14 7 -1.6860 -6.3333 -0.5002 15 6 -2.3942 -7.5718 -0.8501 16 1 -2.1675 -7.9808 -1.8348 17 6 -2.6809 -8.5646 0.2782 18 6 -3.8211 -7.7422 -0.3252 19 6 -5.2288 -7.9669 -0.8807 20 6 -4.9806 -6.8653 0.1516 21 6 -0.4141 -3.5338 -1.5594 22 6 0.2207 -2.3643 -1.2084 23 1 -0.4850 0.8400 -0.0004 24 1 2.6969 -3.6950 0.7254 25 1 1.5369 -5.7610 0.0778 26 1 -1.0997 -5.9014 -2.4708 27 1 0.0769 -6.8426 -1.5231 28 1 -2.3305 -5.5631 -0.4026 29 1 -2.6433 -9.6266 0.0358 30 1 -2.3436 -8.2989 1.2801 31 1 -5.4191 -7.6594 -1.9091 32 1 -5.7648 -8.8562 -0.5489 33 1 -5.3533 -7.0298 1.1626 34 1 -5.0074 -5.8329 -0.1972 35 1 -1.2847 -3.5027 -2.1978 36 1 -0.1504 -1.4166 -1.5697 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715372770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:21 Heat of formation + Delta-G solvation = 69.993281 kcal Electronic energy + Delta-G solvation = -16228.109031 eV Core-core repulsion = 13678.201688 eV Total energy + Delta-G solvation = -2549.907343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.52993 -37.55699 -34.86206 -33.49199 -31.59159 -29.48019 -29.16256 -26.08058 -23.17324 -22.43894 -21.10829 -20.97688 -19.90491 -19.08428 -17.27684 -15.76097 -15.25593 -15.20863 -14.97338 -14.23474 -14.13419 -13.65787 -13.28258 -12.54284 -12.36313 -11.98670 -11.88759 -11.57926 -11.55884 -11.40970 -11.09032 -10.94829 -10.58514 -10.33895 -10.22001 -10.01736 -9.82953 -9.51420 -9.36768 -9.13030 -7.93693 -7.43407 -7.28395 -6.75610 -4.34191 2.74202 3.06948 3.10459 3.11005 3.18066 3.67233 3.77607 3.93500 4.30737 4.45397 4.71381 4.92692 5.29357 5.51598 5.54675 5.58857 5.68083 5.73901 5.81479 5.84665 5.89755 5.94553 6.08042 6.17325 6.31507 6.38739 6.44527 6.96091 7.08783 7.28988 7.39392 7.46428 7.62990 7.74570 7.90975 8.06927 8.15809 8.31959 8.65364 8.90832 8.99263 10.18998 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038798 B = 0.004325 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.506318 B = 6471.979701 C = 6893.252075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.229 4.229 11 C -0.068 4.068 12 C -0.216 4.216 13 C 0.126 3.874 14 N -0.653 5.653 15 C 0.073 3.927 16 H 0.095 0.905 17 C -0.120 4.120 18 C -0.246 4.246 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.095 4.095 22 C -0.167 4.167 23 H 0.280 0.720 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.345 0.655 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 -9.455 -1.964 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.086 4.086 12 C -0.218 4.218 13 C -0.002 4.002 14 N -0.284 5.284 15 C -0.037 4.037 16 H 0.113 0.887 17 C -0.158 4.158 18 C -0.248 4.248 19 C -0.172 4.172 20 C -0.164 4.164 21 C -0.114 4.114 22 C -0.186 4.186 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.374 -9.584 -1.522 11.611 hybrid contribution -0.287 1.089 -0.603 1.278 sum -6.661 -8.495 -2.125 11.003 Atomic orbital electron populations 1.69831 1.07590 1.29151 1.35241 1.25909 0.94709 1.01294 0.92241 0.86322 0.80526 0.80630 0.79295 1.19300 1.20333 1.18608 1.19622 0.98126 0.91307 1.40241 0.90445 1.17629 0.91045 0.92024 0.88263 1.20979 1.03815 0.92934 1.07097 1.20342 0.95180 0.96392 0.96724 1.18890 1.01009 0.92512 1.09369 1.20624 0.92362 0.96119 0.91062 1.60409 1.15207 1.04148 1.48617 1.22246 0.90520 0.94754 0.96213 0.88700 1.22929 0.97547 0.95923 0.99391 1.21913 0.86764 1.07377 1.08698 1.22627 0.95482 1.00365 0.98694 1.22545 0.98856 0.95938 0.99034 1.20523 0.98195 0.92906 0.99731 1.21272 0.99498 0.96604 1.01231 0.90919 0.89079 0.89411 0.96169 0.91842 0.83499 0.89062 0.88182 0.89002 0.88933 0.88756 0.88680 0.89956 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.61 10.96 55.55 0.61 -20.00 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.42 9.05 -37.74 -0.34 -12.76 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.11 3.04 5.57 -106.82 -0.60 2.45 16 10 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 11 C -0.07 -1.54 9.67 -39.66 -0.38 -1.93 16 12 C -0.22 -4.72 5.42 -104.33 -0.56 -5.29 16 13 C 0.13 2.26 5.65 -4.98 -0.03 2.23 16 14 N -0.65 -11.03 6.73 -107.99 -0.73 -11.76 16 15 C 0.07 1.03 6.26 -67.71 -0.42 0.61 16 16 H 0.10 1.26 7.90 -51.92 -0.41 0.85 16 17 C -0.12 -1.52 10.46 -26.73 -0.28 -1.80 16 18 C -0.25 -3.13 5.47 -154.52 -0.85 -3.97 16 19 C -0.13 -1.42 10.53 -26.74 -0.28 -1.70 16 20 C -0.13 -1.47 10.53 -26.73 -0.28 -1.75 16 21 C -0.09 -2.20 9.67 -39.66 -0.38 -2.59 16 22 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 23 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 24 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 25 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 27 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 28 H 0.34 6.04 8.68 -39.29 -0.34 5.70 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -27.16 308.65 -10.98 -38.14 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.27 Total: 10.70 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: -5.22 Total: -35.44 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: -0.12 Total: -31.76 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.16 -10.98 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715372770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.138 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds