Wall clock time and date at job start Mon Mar 30 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48493 * 109.47312 * 269.99387 * 3 2 1 5 5 H 1.48508 * 109.47266 * 29.99284 * 3 2 1 6 6 H 1.48505 * 109.47500 * 149.99298 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00349 * 197.73374 * 7 2 1 9 9 C 1.41402 * 119.99691 * 17.72961 * 7 2 1 10 10 C 1.40712 * 120.24255 * 204.29260 * 9 7 2 11 11 C 1.37619 * 119.74491 * 179.70282 * 10 9 7 12 12 C 1.38633 * 120.24810 * 0.27116 * 11 10 9 13 13 C 1.50703 * 119.75264 * 179.97438 * 12 11 10 14 14 N 1.46894 * 109.47184 * 90.00078 * 13 12 11 15 15 C 1.46899 * 111.00206 * 180.02562 * 14 13 12 16 16 H 1.09008 * 115.54947 * 350.72723 * 15 14 13 17 17 C 1.53003 * 117.49987 * 136.38855 * 15 14 13 18 18 C 1.52990 * 59.99879 * 107.49393 * 17 15 14 19 19 C 1.52992 * 138.59226 * 130.89080 * 18 17 15 20 20 C 1.52999 * 138.59237 * 229.11232 * 18 17 15 21 21 C 1.38638 * 120.50174 * 0.02562 * 12 11 10 22 22 C 1.37617 * 120.24810 * 359.97438 * 21 12 11 23 23 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.12832 * 359.97108 * 10 9 7 25 25 H 1.07997 * 119.88035 * 180.30166 * 11 10 9 26 26 H 1.09002 * 109.47196 * 210.00250 * 13 12 11 27 27 H 1.09004 * 109.46549 * 329.99855 * 13 12 11 28 28 H 1.00900 * 111.00423 * 56.04629 * 14 13 12 29 29 H 1.09000 * 117.50217 * 214.98228 * 17 15 14 30 30 H 1.09003 * 117.49843 * 359.97438 * 17 15 14 31 31 H 1.09004 * 117.49905 * 238.38808 * 19 18 17 32 32 H 1.09002 * 117.49712 * 23.40399 * 19 18 17 33 33 H 1.08996 * 117.49190 * 336.58749 * 20 18 17 34 34 H 1.08999 * 117.50212 * 121.58990 * 20 18 17 35 35 H 1.08001 * 119.87964 * 179.97438 * 21 12 11 36 36 H 1.07999 * 120.12808 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4402 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2341 0.2854 9 6 1.3514 -2.4076 -0.3718 10 6 1.8271 -3.6499 0.0868 11 6 1.1765 -4.8067 -0.2769 12 6 0.0598 -4.7517 -1.0966 13 6 -0.6437 -6.0255 -1.4885 14 7 -1.6860 -6.3333 -0.5002 15 6 -2.3942 -7.5718 -0.8501 16 1 -2.1675 -7.9808 -1.8348 17 6 -2.6809 -8.5646 0.2782 18 6 -3.8211 -7.7422 -0.3252 19 6 -5.2288 -7.9669 -0.8807 20 6 -4.9806 -6.8653 0.1516 21 6 -0.4141 -3.5338 -1.5594 22 6 0.2207 -2.3643 -1.2084 23 1 -0.4850 0.8400 -0.0004 24 1 2.6969 -3.6950 0.7254 25 1 1.5369 -5.7610 0.0778 26 1 -1.0997 -5.9014 -2.4708 27 1 0.0769 -6.8426 -1.5231 28 1 -2.3305 -5.5631 -0.4026 29 1 -2.6433 -9.6266 0.0358 30 1 -2.3436 -8.2989 1.2801 31 1 -5.4191 -7.6594 -1.9091 32 1 -5.7648 -8.8562 -0.5489 33 1 -5.3533 -7.0298 1.1626 34 1 -5.0074 -5.8329 -0.1972 35 1 -1.2847 -3.5027 -2.1978 36 1 -0.1504 -1.4166 -1.5697 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715372770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:20 Heat of formation + Delta-G solvation = 56.463986 kcal Electronic energy + Delta-G solvation = -16228.695705 eV Core-core repulsion = 13678.201688 eV Total energy + Delta-G solvation = -2550.494017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78739 -39.15005 -36.34678 -35.12023 -32.90973 -31.24325 -30.94447 -27.81732 -24.82841 -23.30255 -22.88380 -22.17596 -21.66212 -20.12740 -19.21401 -17.29479 -16.75507 -16.39848 -15.91851 -15.80400 -15.69166 -15.34600 -14.86436 -14.28582 -13.80890 -13.63228 -13.50744 -12.99987 -12.90537 -12.65841 -12.61886 -12.38692 -12.30207 -12.01850 -11.42351 -11.32549 -11.19258 -11.03705 -10.90230 -10.75068 -9.38851 -9.24745 -9.10281 -8.63820 -6.33557 0.93797 1.16061 1.37765 1.51091 1.51172 2.20835 2.62419 2.78247 2.80453 3.33199 3.44276 3.79192 4.02261 4.19584 4.29219 4.38859 4.53252 4.57140 4.64044 4.69445 4.74213 4.79499 4.84302 4.92074 4.99973 5.04706 5.15398 5.16864 5.25606 5.37801 5.48005 5.71513 5.95783 6.10699 6.20015 6.26491 6.40047 6.43949 6.70797 6.94703 7.04541 8.33306 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038798 B = 0.004325 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.506318 B = 6471.979701 C = 6893.252075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.246 4.246 11 C -0.072 4.072 12 C -0.203 4.203 13 C 0.134 3.866 14 N -0.663 5.663 15 C 0.058 3.942 16 H 0.106 0.894 17 C -0.114 4.114 18 C -0.260 4.260 19 C -0.115 4.115 20 C -0.137 4.137 21 C -0.097 4.097 22 C -0.191 4.191 23 H 0.288 0.712 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.338 0.662 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 -10.730 -2.377 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.265 4.265 11 C -0.090 4.090 12 C -0.205 4.205 13 C 0.006 3.994 14 N -0.294 5.294 15 C -0.052 4.052 16 H 0.124 0.876 17 C -0.152 4.152 18 C -0.261 4.261 19 C -0.152 4.152 20 C -0.174 4.174 21 C -0.116 4.116 22 C -0.210 4.210 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.200 -10.888 -1.936 13.196 hybrid contribution -0.123 1.326 -0.481 1.416 sum -7.323 -9.562 -2.416 12.284 Atomic orbital electron populations 1.69881 1.09020 1.30496 1.35780 1.26756 0.95488 1.04501 0.91173 0.85198 0.79060 0.75871 0.79530 1.18636 1.19174 1.18258 1.19863 0.98323 0.92662 1.42469 0.90804 1.17971 0.91976 0.93030 0.89229 1.21183 1.04413 0.93303 1.07613 1.20654 0.95196 0.96703 0.96490 1.19326 1.00196 0.93788 1.07172 1.20529 0.92856 0.94259 0.91768 1.60324 1.15484 1.05020 1.48526 1.22286 0.91798 0.93854 0.97277 0.87636 1.22942 0.97185 0.96822 0.98216 1.22041 0.87034 1.07945 1.09082 1.22752 0.93370 1.00297 0.98784 1.22647 0.98643 0.96053 1.00012 1.20774 0.98490 0.92662 0.99691 1.21250 1.00341 0.97014 1.02400 0.90173 0.88736 0.86931 0.94951 0.90533 0.84305 0.86902 0.89390 0.88222 0.87095 0.88050 0.89285 0.87908 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.10 10.96 21.83 0.24 -43.87 16 2 C 0.04 1.83 5.14 85.26 0.44 2.27 16 3 Si 0.98 38.91 29.59 68.60 2.03 40.94 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -27.99 9.05 23.46 0.21 -27.78 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 10 C -0.25 -12.50 9.80 22.73 0.22 -12.28 16 11 C -0.07 -3.23 9.67 22.22 0.21 -3.02 16 12 C -0.20 -8.67 5.42 -19.67 -0.11 -8.78 16 13 C 0.13 4.49 5.65 85.56 0.48 4.98 16 14 N -0.66 -21.24 6.73 -495.58 -3.34 -24.57 16 15 C 0.06 1.49 6.26 44.91 0.28 1.77 16 16 H 0.11 2.49 7.90 -2.38 -0.02 2.47 16 17 C -0.11 -2.61 10.46 30.59 0.32 -2.29 16 18 C -0.26 -5.98 5.47 -52.19 -0.29 -6.26 16 19 C -0.12 -2.07 10.53 30.59 0.32 -1.75 16 20 C -0.14 -2.91 10.53 30.59 0.32 -2.59 16 21 C -0.10 -4.53 9.67 22.22 0.21 -4.32 16 22 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 23 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 24 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 25 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 26 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 27 H 0.08 2.40 8.08 -2.38 -0.02 2.38 16 28 H 0.34 11.46 8.68 -89.69 -0.78 10.68 16 29 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.10 4.27 8.06 -2.91 -0.02 4.24 16 36 H 0.10 5.58 6.16 -2.91 -0.02 5.57 16 Total: -1.00 -59.30 308.65 1.94 -57.37 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.29 Total: 35.87 kcal Atomic # 6 Polarization: -68.45 SS G_CDS: 2.72 Total: -65.73 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -3.10 Total: -68.44 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -59.30 1.94 -57.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715372770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.829 kcal (2) G-P(sol) polarization free energy of solvation -59.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds