Wall clock time and date at job start Mon Mar 30 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46627 * 125.32529 * 0.02562 * 9 7 2 11 11 C 1.53760 * 107.97986 * 181.15885 * 10 9 7 12 12 H 1.08998 * 115.04940 * 246.60839 * 11 10 9 13 13 C 1.53790 * 113.20571 * 109.90985 * 11 10 9 14 14 C 1.53724 * 87.32115 * 280.84886 * 13 11 10 15 15 H 1.08998 * 113.58160 * 89.19883 * 14 13 11 16 16 C 1.50702 * 113.57668 * 219.91145 * 14 13 11 17 17 C 1.38236 * 120.00345 * 40.22083 * 16 14 13 18 18 C 1.38229 * 120.00355 * 179.78748 * 17 16 14 19 19 C 1.38237 * 119.99748 * 0.44040 * 18 17 16 20 20 C 1.38235 * 120.00281 * 359.81434 * 19 18 17 21 21 C 1.38237 * 119.99783 * 220.49584 * 16 14 13 22 22 C 1.54895 * 104.49946 * 15.83398 * 11 10 9 23 23 H 1.08999 * 116.69936 * 205.60368 * 22 11 10 24 24 C 1.46738 * 125.32372 * 179.71723 * 9 7 2 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.76522 * 300.78544 * 10 9 7 27 27 H 1.08999 * 109.76880 * 61.51116 * 10 9 7 28 28 H 1.09003 * 113.57729 * 35.45534 * 13 11 10 29 29 H 1.08993 * 113.57550 * 166.23446 * 13 11 10 30 30 H 1.08006 * 119.99426 * 0.02562 * 17 16 14 31 31 H 1.07992 * 120.00212 * 180.27482 * 18 17 16 32 32 H 1.08003 * 119.99818 * 179.83217 * 19 18 17 33 33 H 1.07998 * 120.00430 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.00490 * 359.97438 * 21 16 14 35 35 H 1.09006 * 109.99664 * 281.31415 * 24 9 7 36 36 H 1.09000 * 110.00285 * 42.65652 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1343 -2.5242 -0.0005 11 6 -0.4712 -4.0241 0.0295 12 1 -0.9524 -4.4071 -0.8704 13 6 -1.0771 -4.4825 1.3666 14 6 0.3534 -4.4912 1.9292 15 1 0.6599 -3.5362 2.3560 16 6 0.6350 -5.6567 2.8421 17 6 0.1465 -6.9120 2.5312 18 6 0.4085 -7.9819 3.3663 19 6 1.1514 -7.7949 4.5169 20 6 1.6355 -6.5386 4.8306 21 6 1.3771 -5.4695 3.9933 22 6 0.8504 -4.7099 0.4563 23 1 0.9889 -5.7445 0.1425 24 6 1.9383 -3.7214 -0.0048 25 1 -0.4850 0.8401 0.0004 26 1 -0.5508 -2.0352 0.8802 27 1 -0.5461 -2.0716 -0.9026 28 1 -1.7235 -3.7374 1.8305 29 1 -1.5341 -5.4710 1.3220 30 1 -0.4367 -7.0574 1.6339 31 1 0.0306 -8.9634 3.1211 32 1 1.3538 -8.6303 5.1708 33 1 2.2155 -6.3924 5.7298 34 1 1.7554 -4.4880 4.2383 35 1 2.2726 -3.9740 -1.0111 36 1 2.7811 -3.7473 0.6859 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859930549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:07 Heat of formation + Delta-G solvation = 70.956782 kcal Electronic energy + Delta-G solvation = -17272.934239 eV Core-core repulsion = 14723.068677 eV Total energy + Delta-G solvation = -2549.865562 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11138 -38.27622 -34.22686 -31.57122 -30.79545 -30.34524 -27.72976 -26.50722 -24.04377 -23.11182 -22.34303 -20.90748 -19.91438 -17.91528 -17.03547 -16.71886 -15.34476 -14.83768 -14.45470 -14.22051 -13.77742 -13.36431 -13.19948 -12.98666 -12.65407 -12.25695 -11.98303 -11.64670 -11.22733 -11.15852 -10.87303 -10.75306 -10.70309 -10.67037 -10.02916 -9.82294 -9.57654 -9.53146 -9.29010 -8.76789 -8.55240 -8.36136 -6.76386 -5.67658 -3.00685 1.52676 1.55440 3.41982 3.47090 3.49029 3.92879 4.53120 4.92946 5.01578 5.09850 5.13177 5.20950 5.27557 5.42008 5.53687 5.54432 5.68605 5.73214 5.76764 6.07881 6.14269 6.20441 6.22798 6.37160 6.45380 6.47029 6.51897 6.63174 6.64186 6.74939 6.78403 7.04746 7.16297 7.18206 7.63794 7.70518 7.88292 8.32644 9.27878 9.88549 10.53766 11.43763 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.005876 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.533496 B = 4764.041470 C = 5113.247067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.192 3.808 11 C -0.135 4.135 12 H 0.074 0.926 13 C -0.121 4.121 14 C -0.061 4.061 15 H 0.106 0.894 16 C -0.054 4.054 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.114 4.114 23 H 0.092 0.908 24 C 0.145 3.855 25 H 0.251 0.749 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.017 0.983 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -13.915 6.131 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.068 3.932 11 C -0.155 4.155 12 H 0.092 0.908 13 C -0.158 4.158 14 C -0.079 4.079 15 H 0.124 0.876 16 C -0.054 4.054 17 C -0.137 4.137 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.133 4.133 23 H 0.110 0.890 24 C 0.019 3.981 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.034 0.966 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.526 -13.671 6.118 14.987 hybrid contribution 0.463 0.854 -0.002 0.971 sum -0.063 -12.817 6.117 14.202 Atomic orbital electron populations 1.69982 1.04836 1.24918 1.57291 1.24787 0.95704 0.97606 1.02375 0.86131 0.78594 0.83594 0.77533 1.21660 1.20732 1.21705 1.19052 0.90438 0.82412 1.43547 0.90490 1.44219 1.01536 0.99965 1.87158 1.20803 0.84356 0.86908 1.01183 1.23643 0.96108 0.99577 0.96137 0.90792 1.22919 0.95309 1.00556 0.97013 1.22080 0.96831 0.96196 0.92779 0.87622 1.19998 0.95750 0.94876 0.94782 1.21033 1.00434 0.92416 0.99770 1.21078 0.99258 0.98557 0.95172 1.21046 0.99594 0.97085 0.97641 1.21112 1.00178 0.93066 0.99535 1.21171 0.98684 0.99094 0.94512 1.24107 0.96677 0.98187 0.94313 0.88951 1.21035 0.94174 0.85940 0.96924 0.93818 0.93151 0.94152 0.91387 0.90874 0.86148 0.86567 0.86696 0.86497 0.86049 0.96568 0.94861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.25 55.49 0.57 -26.69 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.37 10.25 -15.06 -0.15 -6.53 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.55 3.25 -171.83 -0.56 -16.11 16 10 C 0.19 4.70 4.49 -3.58 -0.02 4.69 16 11 C -0.14 -2.57 5.04 -88.81 -0.45 -3.02 16 12 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.12 -1.99 6.95 -25.94 -0.18 -2.17 16 14 C -0.06 -1.05 3.27 -89.24 -0.29 -1.34 16 15 H 0.11 2.15 7.72 -51.93 -0.40 1.75 16 16 C -0.05 -0.82 5.31 -104.62 -0.56 -1.38 16 17 C -0.12 -1.59 8.65 -39.59 -0.34 -1.93 16 18 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 19 C -0.14 -1.58 10.05 -39.58 -0.40 -1.98 16 20 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 21 C -0.12 -1.69 9.71 -39.58 -0.38 -2.07 16 22 C -0.11 -2.03 4.58 -86.91 -0.40 -2.43 16 23 H 0.09 1.46 7.89 -51.93 -0.41 1.05 16 24 C 0.15 3.12 6.83 -3.36 -0.02 3.10 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 27 H 0.04 1.11 7.48 -51.93 -0.39 0.72 16 28 H 0.07 1.17 7.97 -51.93 -0.41 0.75 16 29 H 0.07 1.03 6.44 -51.93 -0.33 0.70 16 30 H 0.12 1.48 6.83 -52.48 -0.36 1.12 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.73 8.05 -52.49 -0.42 1.31 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 289.09 15.07 4.36 4.36 Total: -1.00 -30.03 289.09 -9.91 -39.93 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.17 Total: 0.41 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -4.08 Total: -19.17 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.01 Total: -42.80 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.03 -9.91 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859930549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.891 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds