Wall clock time and date at job start Mon Mar 30 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46627 * 125.32529 * 0.02562 * 9 7 2 11 11 C 1.53760 * 107.97986 * 181.15885 * 10 9 7 12 12 H 1.08998 * 115.04940 * 246.60839 * 11 10 9 13 13 C 1.53790 * 113.20571 * 109.90985 * 11 10 9 14 14 C 1.53724 * 87.32115 * 280.84886 * 13 11 10 15 15 H 1.08998 * 113.58160 * 89.19883 * 14 13 11 16 16 C 1.50702 * 113.57668 * 219.91145 * 14 13 11 17 17 C 1.38236 * 120.00345 * 40.22083 * 16 14 13 18 18 C 1.38229 * 120.00355 * 179.78748 * 17 16 14 19 19 C 1.38237 * 119.99748 * 0.44040 * 18 17 16 20 20 C 1.38235 * 120.00281 * 359.81434 * 19 18 17 21 21 C 1.38237 * 119.99783 * 220.49584 * 16 14 13 22 22 C 1.54895 * 104.49946 * 15.83398 * 11 10 9 23 23 H 1.08999 * 116.69936 * 205.60368 * 22 11 10 24 24 C 1.46738 * 125.32372 * 179.71723 * 9 7 2 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.76522 * 300.78544 * 10 9 7 27 27 H 1.08999 * 109.76880 * 61.51116 * 10 9 7 28 28 H 1.09003 * 113.57729 * 35.45534 * 13 11 10 29 29 H 1.08993 * 113.57550 * 166.23446 * 13 11 10 30 30 H 1.08006 * 119.99426 * 0.02562 * 17 16 14 31 31 H 1.07992 * 120.00212 * 180.27482 * 18 17 16 32 32 H 1.08003 * 119.99818 * 179.83217 * 19 18 17 33 33 H 1.07998 * 120.00430 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.00490 * 359.97438 * 21 16 14 35 35 H 1.09006 * 109.99664 * 281.31415 * 24 9 7 36 36 H 1.09000 * 110.00285 * 42.65652 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1343 -2.5242 -0.0005 11 6 -0.4712 -4.0241 0.0295 12 1 -0.9524 -4.4071 -0.8704 13 6 -1.0771 -4.4825 1.3666 14 6 0.3534 -4.4912 1.9292 15 1 0.6599 -3.5362 2.3560 16 6 0.6350 -5.6567 2.8421 17 6 0.1465 -6.9120 2.5312 18 6 0.4085 -7.9819 3.3663 19 6 1.1514 -7.7949 4.5169 20 6 1.6355 -6.5386 4.8306 21 6 1.3771 -5.4695 3.9933 22 6 0.8504 -4.7099 0.4563 23 1 0.9889 -5.7445 0.1425 24 6 1.9383 -3.7214 -0.0048 25 1 -0.4850 0.8401 0.0004 26 1 -0.5508 -2.0352 0.8802 27 1 -0.5461 -2.0716 -0.9026 28 1 -1.7235 -3.7374 1.8305 29 1 -1.5341 -5.4710 1.3220 30 1 -0.4367 -7.0574 1.6339 31 1 0.0306 -8.9634 3.1211 32 1 1.3538 -8.6303 5.1708 33 1 2.2155 -6.3924 5.7298 34 1 1.7554 -4.4880 4.2383 35 1 2.2726 -3.9740 -1.0111 36 1 2.7811 -3.7473 0.6859 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859930549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:07 Heat of formation + Delta-G solvation = 55.519956 kcal Electronic energy + Delta-G solvation = -17273.603630 eV Core-core repulsion = 14723.068677 eV Total energy + Delta-G solvation = -2550.534953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52421 -39.45082 -36.06939 -33.36504 -31.90577 -31.61889 -29.48232 -28.29351 -25.61336 -24.71775 -23.36185 -22.17733 -21.66853 -19.44169 -18.90445 -18.00709 -16.71650 -16.40023 -15.88106 -15.65646 -15.40296 -14.73575 -14.60696 -14.16049 -14.09506 -13.77172 -13.58766 -13.33877 -12.90943 -12.75810 -12.60071 -12.40207 -12.03130 -11.94867 -11.88045 -11.79396 -11.28426 -11.03103 -10.83192 -10.62916 -9.73364 -9.44544 -8.87423 -7.85833 -5.21407 0.52919 0.58496 1.43605 1.45851 1.54685 2.48290 2.92757 3.31482 3.49503 3.65282 3.75718 3.94031 4.02931 4.14977 4.22286 4.26287 4.36665 4.56595 4.67700 4.70936 4.72654 4.88183 4.88612 4.91146 5.02921 5.09220 5.17358 5.23976 5.30317 5.46958 5.57907 5.67430 5.69766 5.75196 5.82988 5.91099 6.21135 6.21962 7.11202 7.79823 8.42561 9.24213 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.005876 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.533496 B = 4764.041470 C = 5113.247067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.269 1.269 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.203 3.797 11 C -0.134 4.134 12 H 0.095 0.905 13 C -0.105 4.105 14 C -0.055 4.055 15 H 0.061 0.939 16 C -0.073 4.073 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.140 4.140 22 C -0.096 4.096 23 H 0.129 0.871 24 C 0.138 3.862 25 H 0.246 0.754 26 H 0.013 0.987 27 H 0.000 1.000 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.022 0.978 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -16.863 6.667 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.194 1.194 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.348 5.348 10 C 0.078 3.922 11 C -0.153 4.153 12 H 0.113 0.887 13 C -0.142 4.142 14 C -0.073 4.073 15 H 0.079 0.921 16 C -0.073 4.073 17 C -0.140 4.140 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.143 4.143 21 C -0.158 4.158 22 C -0.115 4.115 23 H 0.147 0.853 24 C 0.013 3.987 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.018 0.982 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.124 0.876 35 H 0.040 0.960 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.207 -16.647 6.656 17.929 hybrid contribution 0.415 1.731 -0.122 1.784 sum 0.208 -14.916 6.534 16.286 Atomic orbital electron populations 1.70219 1.06295 1.25209 1.58287 1.25653 0.96622 1.01010 1.02537 0.85073 0.77675 0.79072 0.77494 1.21273 1.19355 1.21898 1.19447 0.90951 0.83829 1.43097 0.90228 1.44510 1.02349 1.01072 1.86904 1.20507 0.83648 0.90605 0.97430 1.23482 0.97764 0.95540 0.98537 0.88701 1.22910 0.94820 1.01919 0.94600 1.21794 0.97159 0.95431 0.92923 0.92069 1.19825 0.97609 0.94885 0.94955 1.21205 1.00343 0.91746 1.00688 1.21467 0.98347 0.99428 0.94536 1.21462 0.98302 0.97367 0.97872 1.21363 1.00186 0.92980 0.99760 1.21228 0.99739 0.99420 0.95452 1.24138 0.93970 0.98777 0.94591 0.85280 1.21226 0.95279 0.85064 0.97175 0.94430 0.96853 0.98196 0.92794 0.87020 0.84576 0.83459 0.83679 0.84653 0.87569 0.96029 0.95179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.94 10.25 21.65 0.22 -58.72 16 2 C -0.07 -3.84 5.48 84.86 0.47 -3.37 16 3 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 7 C -0.24 -14.25 10.25 84.03 0.86 -13.39 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -33.40 3.25 -697.54 -2.27 -35.66 16 10 C 0.20 10.45 4.49 86.61 0.39 10.84 16 11 C -0.13 -5.03 5.04 -9.62 -0.05 -5.08 16 12 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 13 C -0.11 -3.36 6.95 31.10 0.22 -3.15 16 14 C -0.05 -1.88 3.27 -9.90 -0.03 -1.92 16 15 H 0.06 2.65 7.72 -2.39 -0.02 2.63 16 16 C -0.07 -2.11 5.31 -19.86 -0.11 -2.21 16 17 C -0.12 -2.83 8.65 22.27 0.19 -2.64 16 18 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 19 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 20 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 21 C -0.14 -4.01 9.71 22.27 0.22 -3.79 16 22 C -0.10 -3.31 4.58 -8.39 -0.04 -3.35 16 23 H 0.13 3.58 7.89 -2.39 -0.02 3.56 16 24 C 0.14 5.96 6.83 86.69 0.59 6.55 16 25 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 26 H 0.01 0.77 6.91 -2.39 -0.02 0.75 16 27 H 0.00 -0.01 7.48 -2.39 -0.02 -0.03 16 28 H 0.05 1.87 7.97 -2.39 -0.02 1.85 16 29 H 0.11 2.75 6.44 -2.39 -0.02 2.73 16 30 H 0.14 2.67 6.83 -2.91 -0.02 2.65 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.11 3.21 8.05 -2.91 -0.02 3.19 16 35 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -68.48 289.09 4.41 -64.07 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.05 Total: 9.76 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 3.38 Total: -28.53 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -2.04 Total: -94.38 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -68.48 4.41 -64.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859930549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.590 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds