Wall clock time and date at job start Mon Mar 30 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47091 * 194.86370 * 3 2 1 5 5 C 1.53001 * 109.47328 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47108 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00184 * 269.99848 * 6 5 4 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47087 * 59.99986 * 12 10 8 14 14 H 1.48501 * 109.47059 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47145 * 300.00293 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00277 * 6 5 4 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47650 * 74.86006 * 3 2 1 23 23 H 1.09005 * 109.47291 * 314.85733 * 3 2 1 24 24 H 1.08995 * 109.47254 * 59.99828 * 4 3 2 25 25 H 1.09000 * 109.47175 * 300.00112 * 4 3 2 26 26 H 1.08995 * 109.46987 * 59.99795 * 5 4 3 27 27 H 1.09000 * 109.47190 * 300.00233 * 5 4 3 28 28 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 29 29 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 30 30 H 0.97006 * 120.00477 * 180.02562 * 11 10 8 31 31 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 32 32 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 34 34 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3951 0.3700 5 6 4.6474 1.3957 0.3707 6 7 5.1350 2.7311 0.7244 7 6 5.3793 3.7235 -0.3252 8 6 6.8028 3.6065 -0.8057 9 1 7.4600 2.8671 -0.3723 10 6 7.2663 4.4433 -1.7986 11 7 6.4661 5.3440 -2.3260 12 14 9.0306 4.2978 -2.3948 13 1 9.2584 2.9350 -2.9390 14 1 9.2778 5.3031 -3.4595 15 1 9.9579 4.5392 -1.2604 16 6 5.3672 3.0580 2.0624 17 6 5.8291 4.3240 2.3995 18 6 6.0571 4.6441 3.7235 19 6 5.8256 3.7063 4.7130 20 6 5.3657 2.4451 4.3808 21 6 5.1357 2.1184 3.0589 22 1 2.9715 -0.2676 -0.9920 23 1 2.9717 -0.7241 0.7285 24 1 2.7539 1.6633 1.3620 25 1 2.7537 2.1199 -0.3583 26 1 5.0112 1.1273 -0.6211 27 1 5.0107 0.6710 1.0993 28 1 4.6990 3.5464 -1.1581 29 1 5.2118 4.7237 0.0745 30 1 6.7920 5.9326 -3.0249 31 1 6.0140 5.0555 1.6269 32 1 6.4166 5.6280 3.9863 33 1 6.0043 3.9593 5.7477 34 1 5.1856 1.7151 5.1561 35 1 4.7769 1.1330 2.8001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019471009.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:51 Heat of formation + Delta-G solvation = 46.472315 kcal Electronic energy + Delta-G solvation = -16747.609136 eV Core-core repulsion = 14131.255936 eV Total energy + Delta-G solvation = -2616.353199 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.97970 -37.05888 -35.90468 -33.53884 -32.44396 -30.35441 -29.14410 -27.84555 -25.47500 -23.11885 -22.16360 -21.24612 -19.72696 -17.60277 -16.92129 -16.44357 -15.46395 -15.04409 -14.87491 -14.27689 -14.15448 -13.86515 -13.17094 -13.05081 -12.95775 -12.65373 -12.59001 -12.10144 -11.70385 -11.50913 -11.45031 -11.25187 -11.00757 -10.78480 -10.70884 -10.52705 -10.30754 -9.95465 -9.79044 -8.94575 -8.53294 -8.30235 -6.54805 -6.06349 -4.20593 2.06910 2.28257 2.75114 2.78620 3.25760 3.31016 3.33700 3.88557 4.13326 4.37515 4.56189 5.00271 5.15639 5.19462 5.34549 5.43611 5.50359 5.58288 5.65786 5.76685 5.92712 6.05636 6.15886 6.27608 6.39540 6.44543 6.61114 6.93199 7.05296 7.15367 7.23066 7.33788 7.55840 7.58122 7.77868 8.11993 8.22434 8.43896 8.88265 9.46589 10.92591 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.007760 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.714905 B = 3607.417204 C = 5222.022038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.213 3.787 3 C -0.025 4.025 4 C -0.138 4.138 5 C 0.128 3.872 6 N -0.611 5.611 7 C 0.250 3.750 8 C -0.532 4.532 9 H 0.059 0.941 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.237 3.763 17 C -0.186 4.186 18 C -0.078 4.078 19 C -0.204 4.204 20 C -0.080 4.080 21 C -0.220 4.220 22 H 0.111 0.889 23 H 0.108 0.892 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.265 0.735 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 -7.439 7.446 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.105 4.105 3 C -0.066 4.066 4 C -0.178 4.178 5 C 0.003 3.997 6 N -0.316 5.316 7 C 0.131 3.869 8 C -0.571 4.571 9 H 0.077 0.923 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.132 3.868 17 C -0.208 4.208 18 C -0.097 4.097 19 C -0.224 4.224 20 C -0.099 4.099 21 C -0.243 4.243 22 H 0.129 0.871 23 H 0.126 0.874 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.763 -7.325 7.052 10.842 hybrid contribution 1.467 0.043 -0.452 1.535 sum -2.296 -7.282 6.600 10.093 Atomic orbital electron populations 1.81202 1.13266 1.08948 1.09297 1.29342 0.95454 0.92862 0.92813 1.19305 0.81256 1.00563 1.05460 1.22099 0.98205 0.94375 1.03123 1.21216 0.91041 0.85690 1.01730 1.47091 1.67894 1.13170 1.03442 1.19270 0.96080 0.86985 0.84598 1.21538 0.97073 1.18638 1.19884 0.92250 1.24952 0.97795 0.95032 0.96213 1.69916 1.35743 1.20603 1.27104 0.86595 0.84815 0.77821 0.78445 1.20226 1.21250 1.20135 1.17927 0.91486 0.92871 0.84557 1.20930 1.06503 0.96731 0.96667 1.20835 0.97778 0.98451 0.92608 1.20676 1.08475 0.94937 0.98323 1.20685 0.97907 0.96038 0.95229 1.20577 1.11823 0.99345 0.92512 0.87109 0.87416 0.91083 0.90642 0.90073 0.91403 0.95115 0.94737 0.92576 0.85079 0.87149 0.87697 0.87433 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.77 18.54 42.15 0.78 -5.98 16 2 C 0.21 2.54 15.43 -20.76 -0.32 2.22 16 3 C -0.03 -0.21 5.70 -29.52 -0.17 -0.38 16 4 C -0.14 -1.64 5.49 -26.73 -0.15 -1.79 16 5 C 0.13 1.83 5.16 -4.04 -0.02 1.80 16 6 N -0.61 -11.59 2.59 -173.13 -0.45 -12.04 16 7 C 0.25 5.82 4.91 -5.20 -0.03 5.79 16 8 C -0.53 -13.72 9.39 -34.44 -0.32 -14.04 16 9 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 12 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.24 4.45 6.55 -83.78 -0.55 3.90 16 17 C -0.19 -3.62 9.20 -39.38 -0.36 -3.98 16 18 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 19 C -0.20 -3.13 10.04 -39.54 -0.40 -3.53 16 20 C -0.08 -1.19 10.04 -39.61 -0.40 -1.59 16 21 C -0.22 -3.51 9.21 -39.38 -0.36 -3.88 16 22 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 27 H 0.07 0.83 6.20 -51.93 -0.32 0.51 16 28 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.03 0.87 6.20 -51.93 -0.32 0.55 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.13 2.82 6.15 -52.49 -0.32 2.50 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.10 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.11 1.55 6.14 -52.48 -0.32 1.22 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -29.64 305.59 -7.55 -37.19 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.63 Total: 0.39 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -3.57 Total: -15.62 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 1.07 Total: -42.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.64 -7.55 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019471009.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.658 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds