Wall clock time and date at job start Mon Mar 30 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47091 * 194.86370 * 3 2 1 5 5 C 1.53001 * 109.47328 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47108 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00184 * 269.99848 * 6 5 4 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47087 * 59.99986 * 12 10 8 14 14 H 1.48501 * 109.47059 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47145 * 300.00293 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00277 * 6 5 4 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47650 * 74.86006 * 3 2 1 23 23 H 1.09005 * 109.47291 * 314.85733 * 3 2 1 24 24 H 1.08995 * 109.47254 * 59.99828 * 4 3 2 25 25 H 1.09000 * 109.47175 * 300.00112 * 4 3 2 26 26 H 1.08995 * 109.46987 * 59.99795 * 5 4 3 27 27 H 1.09000 * 109.47190 * 300.00233 * 5 4 3 28 28 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 29 29 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 30 30 H 0.97006 * 120.00477 * 180.02562 * 11 10 8 31 31 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 32 32 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 34 34 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3951 0.3700 5 6 4.6474 1.3957 0.3707 6 7 5.1350 2.7311 0.7244 7 6 5.3793 3.7235 -0.3252 8 6 6.8028 3.6065 -0.8057 9 1 7.4600 2.8671 -0.3723 10 6 7.2663 4.4433 -1.7986 11 7 6.4661 5.3440 -2.3260 12 14 9.0306 4.2978 -2.3948 13 1 9.2584 2.9350 -2.9390 14 1 9.2778 5.3031 -3.4595 15 1 9.9579 4.5392 -1.2604 16 6 5.3672 3.0580 2.0624 17 6 5.8291 4.3240 2.3995 18 6 6.0571 4.6441 3.7235 19 6 5.8256 3.7063 4.7130 20 6 5.3657 2.4451 4.3808 21 6 5.1357 2.1184 3.0589 22 1 2.9715 -0.2676 -0.9920 23 1 2.9717 -0.7241 0.7285 24 1 2.7539 1.6633 1.3620 25 1 2.7537 2.1199 -0.3583 26 1 5.0112 1.1273 -0.6211 27 1 5.0107 0.6710 1.0993 28 1 4.6990 3.5464 -1.1581 29 1 5.2118 4.7237 0.0745 30 1 6.7920 5.9326 -3.0249 31 1 6.0140 5.0555 1.6269 32 1 6.4166 5.6280 3.9863 33 1 6.0043 3.9593 5.7477 34 1 5.1856 1.7151 5.1561 35 1 4.7769 1.1330 2.8001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019471009.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:51 Heat of formation + Delta-G solvation = 31.119569 kcal Electronic energy + Delta-G solvation = -16748.274881 eV Core-core repulsion = 14131.255936 eV Total energy + Delta-G solvation = -2617.018944 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.30515 -38.09338 -37.19175 -35.08132 -33.96460 -31.66798 -30.56322 -29.29229 -26.92559 -24.77009 -23.36087 -22.54275 -21.06511 -18.66976 -18.48707 -18.07943 -16.77407 -16.33762 -16.15057 -15.83100 -15.33178 -15.06669 -14.54875 -14.38452 -14.28415 -13.90899 -13.84046 -13.56838 -13.11404 -12.92992 -12.81205 -12.46379 -12.41274 -12.36676 -12.15326 -11.94456 -11.69218 -11.56610 -11.24735 -10.58128 -10.43963 -9.60025 -8.31138 -7.75752 -6.30749 0.76868 0.98352 1.41827 1.43397 1.51109 1.79664 1.87002 2.38882 2.67057 3.12897 3.16211 3.27063 4.07516 4.20312 4.32484 4.35453 4.45627 4.52531 4.66377 4.74571 4.83660 4.91159 4.96143 5.03013 5.17547 5.23717 5.27932 5.41891 5.44165 5.67006 5.77218 5.83659 5.95747 6.14786 6.29201 6.58957 6.65772 6.91973 7.04798 7.41484 8.88673 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.007760 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.714905 B = 3607.417204 C = 5222.022038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.238 3.762 3 C -0.014 4.014 4 C -0.126 4.126 5 C 0.125 3.875 6 N -0.622 5.622 7 C 0.269 3.731 8 C -0.536 4.536 9 H 0.053 0.947 10 C 0.012 3.988 11 N -0.929 5.929 12 Si 0.958 3.042 13 H -0.265 1.265 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.213 3.787 17 C -0.223 4.223 18 C -0.086 4.086 19 C -0.200 4.200 20 C -0.075 4.075 21 C -0.213 4.213 22 H 0.135 0.865 23 H 0.149 0.851 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.013 0.987 29 H 0.003 0.997 30 H 0.265 0.735 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 -9.928 9.235 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.078 4.078 3 C -0.054 4.054 4 C -0.167 4.167 5 C 0.001 3.999 6 N -0.328 5.328 7 C 0.147 3.853 8 C -0.575 4.575 9 H 0.072 0.928 10 C -0.187 4.187 11 N -0.569 5.569 12 Si 0.783 3.217 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.201 1.201 16 C 0.109 3.891 17 C -0.246 4.246 18 C -0.104 4.104 19 C -0.220 4.220 20 C -0.094 4.094 21 C -0.236 4.236 22 H 0.153 0.847 23 H 0.167 0.833 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.031 0.969 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.843 -9.843 8.867 13.549 hybrid contribution 1.193 0.845 -0.888 1.710 sum -1.650 -8.998 7.979 12.138 Atomic orbital electron populations 1.81229 1.15263 1.10849 1.11549 1.29907 0.95935 0.91082 0.90925 1.19477 0.78777 0.99060 1.08087 1.21894 0.96621 0.95994 1.02180 1.21454 0.92221 0.83838 1.02342 1.46953 1.69052 1.14036 1.02782 1.18710 0.94522 0.87012 0.85074 1.21793 0.98103 1.18075 1.19506 0.92826 1.25746 1.01616 0.94766 0.96549 1.70037 1.37565 1.21544 1.27799 0.85613 0.80064 0.78223 0.77808 1.19006 1.21016 1.20097 1.18203 0.92576 0.93380 0.84983 1.20849 1.09523 0.97073 0.97131 1.21045 0.97691 0.99748 0.91951 1.21075 1.07000 0.94712 0.99263 1.21182 0.96012 0.96519 0.95649 1.20908 1.10644 0.99795 0.92243 0.84723 0.83303 0.91484 0.93374 0.90582 0.88364 0.96915 0.97912 0.92622 0.88990 0.85980 0.84678 0.83485 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -15.06 18.54 20.01 0.37 -14.69 16 2 C 0.24 5.24 15.43 89.44 1.38 6.62 16 3 C -0.01 -0.19 5.70 28.79 0.16 -0.03 16 4 C -0.13 -2.82 5.49 30.59 0.17 -2.65 16 5 C 0.12 3.34 5.16 86.38 0.45 3.79 16 6 N -0.62 -23.90 2.59 -701.65 -1.82 -25.72 16 7 C 0.27 13.17 4.91 85.63 0.42 13.59 16 8 C -0.54 -28.48 9.39 25.60 0.24 -28.24 16 9 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 10 C 0.01 0.66 5.46 84.65 0.46 1.12 16 11 N -0.93 -53.46 13.29 21.45 0.28 -53.18 16 12 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 13 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 16 C 0.21 7.95 6.55 38.21 0.25 8.20 16 17 C -0.22 -9.03 9.20 22.40 0.21 -8.82 16 18 C -0.09 -2.85 10.04 22.25 0.22 -2.63 16 19 C -0.20 -5.54 10.04 22.29 0.22 -5.31 16 20 C -0.08 -1.93 10.04 22.25 0.22 -1.70 16 21 C -0.21 -6.17 9.21 22.40 0.21 -5.96 16 22 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.15 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 2.11 8.07 -2.39 -0.02 2.09 16 27 H 0.10 2.03 6.20 -2.39 -0.01 2.02 16 28 H 0.01 0.66 8.07 -2.39 -0.02 0.64 16 29 H 0.00 0.16 6.20 -2.39 -0.01 0.14 16 30 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 31 H 0.09 4.35 6.15 -2.91 -0.02 4.33 16 32 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.14 3.20 6.14 -2.91 -0.02 3.18 16 Total: -1.00 -68.09 305.59 6.55 -61.54 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.08 Total: 9.34 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.61 Total: -22.01 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -1.16 Total: -93.59 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -68.09 6.55 -61.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019471009.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.656 kcal (2) G-P(sol) polarization free energy of solvation -68.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds