Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36635 * 119.66451 * 2 1 4 4 C 1.39708 * 119.88124 * 179.73459 * 3 2 1 5 5 N 1.35786 * 133.59909 * 180.18477 * 4 3 2 6 6 C 1.30110 * 109.64491 * 180.31359 * 5 4 3 7 7 N 1.36039 * 110.10677 * 0.02562 * 6 5 4 8 8 C 1.46499 * 126.35238 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47633 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46761 * 59.97121 * 8 7 6 11 11 C 1.50709 * 109.46928 * 299.97831 * 8 7 6 12 12 H 1.08000 * 119.99854 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99769 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99890 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99953 * 179.97438 * 13 11 8 16 16 H 1.48492 * 109.47573 * 89.99784 * 15 13 11 17 17 H 1.48502 * 109.47058 * 210.00032 * 15 13 11 18 18 H 1.48508 * 109.46867 * 329.99620 * 15 13 11 19 19 C 1.38062 * 107.30448 * 359.97438 * 7 6 5 20 20 C 1.38786 * 134.15045 * 180.02562 * 19 7 6 21 21 C 1.37903 * 119.68741 * 179.97438 * 20 19 7 22 22 C 1.50702 * 119.77212 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47152 * 269.72754 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72854 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72835 * 1 2 3 26 26 H 1.07997 * 120.05839 * 0.02562 * 3 2 1 27 27 H 1.08002 * 124.95021 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47022 * 179.97438 * 10 8 7 29 29 H 1.08990 * 109.47883 * 300.00350 * 10 8 7 30 30 H 1.08997 * 109.47185 * 60.00790 * 10 8 7 31 31 H 0.97005 * 119.99648 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.16045 * 359.97438 * 20 19 7 33 33 H 1.08997 * 109.47015 * 270.02486 * 22 21 20 34 34 H 1.09000 * 109.47249 * 30.02328 * 22 21 20 35 35 H 1.09000 * 109.47272 * 150.02585 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.1873 0.0000 4 6 3.5803 1.1926 0.0056 5 7 4.5130 2.1794 0.0103 6 6 5.7040 1.6557 0.0079 7 7 5.6179 0.2981 0.0009 8 6 6.7404 -0.6433 -0.0031 9 1 6.3586 -1.6642 -0.0081 10 6 7.5942 -0.4241 1.2475 11 6 7.5823 -0.4158 -1.2322 12 1 7.3083 0.3528 -1.9398 13 6 8.7024 -1.1888 -1.4534 14 7 9.0362 -2.1244 -0.5915 15 14 9.7455 -0.9074 -2.9772 16 1 10.8004 0.0937 -2.6770 17 1 10.3791 -2.1866 -3.3865 18 1 8.8862 -0.4056 -4.0795 19 6 4.2764 -0.0283 -0.0004 20 6 3.5725 -1.2244 -0.0060 21 6 2.1936 -1.2055 -0.0052 22 6 1.4274 -2.5031 -0.0118 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8876 -0.5181 25 1 -0.3633 0.8924 -0.5096 26 1 1.6388 2.1199 0.0004 27 1 6.6267 2.2170 0.0101 28 1 8.4291 -1.1248 1.2447 29 1 7.9760 0.5967 1.2525 30 1 6.9853 -0.5886 2.1364 31 1 9.8240 -2.6685 -0.7473 32 1 4.1021 -2.1657 -0.0109 33 1 1.2425 -2.8107 -1.0410 34 1 2.0091 -3.2712 0.4980 35 1 0.4763 -2.3662 0.5029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = 51.989642 kcal Electronic energy + Delta-G solvation = -17247.887516 eV Core-core repulsion = 14631.773566 eV Total energy + Delta-G solvation = -2616.113950 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37708 -37.77355 -34.94645 -32.52394 -31.52789 -31.08261 -29.01829 -26.40652 -25.65077 -25.48698 -22.29711 -21.88630 -20.29265 -19.34088 -16.88029 -16.14834 -15.81392 -14.98337 -14.58962 -14.42805 -13.86491 -13.64828 -13.52392 -12.86444 -12.82868 -12.62979 -12.13561 -11.91254 -11.87281 -11.41192 -11.24273 -11.15262 -11.06050 -10.76494 -10.54093 -10.42787 -10.30078 -9.86408 -9.31347 -9.11769 -8.71614 -7.51275 -7.33881 -6.36477 -4.47475 1.54430 2.08003 3.13618 3.21027 3.24672 3.53816 3.70855 4.20057 4.36969 4.85959 4.95803 5.15806 5.26713 5.42586 5.56973 5.62350 5.76587 5.84250 5.93760 6.00900 6.03695 6.05088 6.18579 6.32830 6.41295 6.53285 6.60765 6.68285 6.94580 7.05997 7.17149 7.31189 7.43051 7.52927 7.64077 7.85512 8.07353 8.58270 8.65314 9.21664 10.68676 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030086 B = 0.006338 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.457335 B = 4416.417550 C = 4734.881242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.107 4.107 3 C -0.071 4.071 4 C 0.039 3.961 5 N -0.527 5.527 6 C 0.272 3.728 7 N -0.455 5.455 8 C 0.258 3.742 9 H 0.056 0.944 10 C -0.150 4.150 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.070 3.930 14 N -0.885 5.885 15 Si 0.907 3.093 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.046 3.954 20 C -0.096 4.096 21 C -0.089 4.089 22 C -0.106 4.106 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.119 0.881 27 H 0.204 0.796 28 H 0.103 0.897 29 H 0.038 0.962 30 H 0.018 0.982 31 H 0.268 0.732 32 H 0.119 0.881 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.322 0.552 1.944 10.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 C -0.091 4.091 4 C -0.082 4.082 5 N -0.248 5.248 6 C -0.014 4.014 7 N -0.139 5.139 8 C 0.158 3.842 9 H 0.074 0.926 10 C -0.208 4.208 11 C -0.576 4.576 12 H 0.084 0.916 13 C -0.134 4.134 14 N -0.522 5.522 15 Si 0.734 3.266 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.066 4.066 20 C -0.117 4.117 21 C -0.091 4.091 22 C -0.163 4.163 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.137 0.863 27 H 0.220 0.780 28 H 0.121 0.879 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.197 1.137 1.982 10.450 hybrid contribution 1.148 -0.737 -0.819 1.591 sum -9.049 0.399 1.163 9.133 Atomic orbital electron populations 1.20700 0.91586 1.02184 1.01631 1.19030 0.95398 0.92099 1.04396 1.19649 0.90288 0.97387 1.01741 1.19082 0.93890 0.88904 1.06310 1.70438 0.98130 1.31245 1.24969 1.25057 0.97566 0.81571 0.97175 1.46323 1.05424 1.07936 1.54248 1.19323 0.81154 0.87665 0.96021 0.92614 1.22144 1.01667 1.02124 0.94878 1.21259 1.09870 1.20301 1.06197 0.91595 1.24887 0.96989 0.94360 0.97118 1.69850 1.26433 1.20532 1.35428 0.86339 0.80112 0.77863 0.82330 1.20183 1.20842 1.19666 1.18980 0.84944 0.96430 1.06254 1.19817 0.92801 0.95301 1.03732 1.19281 0.92326 0.94656 1.02834 1.20715 0.99506 0.94219 1.01846 0.91874 0.91741 0.92090 0.86343 0.77978 0.87898 0.94274 0.96328 0.92182 0.86310 0.91647 0.91931 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 9.16 36.01 0.33 -0.85 16 2 C -0.11 -1.66 5.84 -105.02 -0.61 -2.28 16 3 C -0.07 -1.26 9.67 -39.61 -0.38 -1.64 16 4 C 0.04 0.81 7.23 -84.70 -0.61 0.20 16 5 N -0.53 -11.35 11.27 -12.05 -0.14 -11.49 16 6 C 0.27 5.71 11.58 -89.78 -1.04 4.67 16 7 N -0.45 -10.18 2.66 -109.93 -0.29 -10.47 16 8 C 0.26 6.15 2.98 -69.08 -0.21 5.94 16 9 H 0.06 1.43 7.63 -51.93 -0.40 1.03 16 10 C -0.15 -3.35 9.02 37.16 0.34 -3.01 16 11 C -0.54 -13.80 8.51 -34.44 -0.29 -14.09 16 12 H 0.07 1.73 7.74 -52.49 -0.41 1.32 16 13 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 14 N -0.89 -23.13 11.32 55.43 0.63 -22.50 16 15 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.05 1.00 6.87 -83.99 -0.58 0.43 16 20 C -0.10 -1.83 9.53 -39.50 -0.38 -2.21 16 21 C -0.09 -1.43 5.88 -104.56 -0.62 -2.05 16 22 C -0.11 -1.30 9.16 36.01 0.33 -0.97 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 25 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 26 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.20 3.67 8.06 -52.49 -0.42 3.25 16 28 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 29 H 0.04 0.82 7.95 -51.93 -0.41 0.41 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.12 2.20 7.76 -52.49 -0.41 1.80 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.06 0.67 6.66 -51.93 -0.35 0.33 16 LS Contribution 292.30 15.07 4.40 4.40 Total: -1.00 -27.97 292.30 -8.95 -36.91 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.72 Total: 2.25 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -3.81 Total: -14.16 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.20 Total: -44.46 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.97 -8.95 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.903 kcal (2) G-P(sol) polarization free energy of solvation -27.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds