Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36635 * 119.66451 * 2 1 4 4 C 1.39708 * 119.88124 * 179.73459 * 3 2 1 5 5 N 1.35786 * 133.59909 * 180.18477 * 4 3 2 6 6 C 1.30110 * 109.64491 * 180.31359 * 5 4 3 7 7 N 1.36039 * 110.10677 * 0.02562 * 6 5 4 8 8 C 1.46499 * 126.35238 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47633 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46761 * 59.97121 * 8 7 6 11 11 C 1.50709 * 109.46928 * 299.97831 * 8 7 6 12 12 H 1.08000 * 119.99854 * 359.97438 * 11 8 7 13 13 C 1.37876 * 119.99769 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99890 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99953 * 179.97438 * 13 11 8 16 16 H 1.48492 * 109.47573 * 89.99784 * 15 13 11 17 17 H 1.48502 * 109.47058 * 210.00032 * 15 13 11 18 18 H 1.48508 * 109.46867 * 329.99620 * 15 13 11 19 19 C 1.38062 * 107.30448 * 359.97438 * 7 6 5 20 20 C 1.38786 * 134.15045 * 180.02562 * 19 7 6 21 21 C 1.37903 * 119.68741 * 179.97438 * 20 19 7 22 22 C 1.50702 * 119.77212 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47152 * 269.72754 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72854 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72835 * 1 2 3 26 26 H 1.07997 * 120.05839 * 0.02562 * 3 2 1 27 27 H 1.08002 * 124.95021 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47022 * 179.97438 * 10 8 7 29 29 H 1.08990 * 109.47883 * 300.00350 * 10 8 7 30 30 H 1.08997 * 109.47185 * 60.00790 * 10 8 7 31 31 H 0.97005 * 119.99648 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.16045 * 359.97438 * 20 19 7 33 33 H 1.08997 * 109.47015 * 270.02486 * 22 21 20 34 34 H 1.09000 * 109.47249 * 30.02328 * 22 21 20 35 35 H 1.09000 * 109.47272 * 150.02585 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.1873 0.0000 4 6 3.5803 1.1926 0.0056 5 7 4.5130 2.1794 0.0103 6 6 5.7040 1.6557 0.0079 7 7 5.6179 0.2981 0.0009 8 6 6.7404 -0.6433 -0.0031 9 1 6.3586 -1.6642 -0.0081 10 6 7.5942 -0.4241 1.2475 11 6 7.5823 -0.4158 -1.2322 12 1 7.3083 0.3528 -1.9398 13 6 8.7024 -1.1888 -1.4534 14 7 9.0362 -2.1244 -0.5915 15 14 9.7455 -0.9074 -2.9772 16 1 10.8004 0.0937 -2.6770 17 1 10.3791 -2.1866 -3.3865 18 1 8.8862 -0.4056 -4.0795 19 6 4.2764 -0.0283 -0.0004 20 6 3.5725 -1.2244 -0.0060 21 6 2.1936 -1.2055 -0.0052 22 6 1.4274 -2.5031 -0.0118 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 -0.8876 -0.5181 25 1 -0.3633 0.8924 -0.5096 26 1 1.6388 2.1199 0.0004 27 1 6.6267 2.2170 0.0101 28 1 8.4291 -1.1248 1.2447 29 1 7.9760 0.5967 1.2525 30 1 6.9853 -0.5886 2.1364 31 1 9.8240 -2.6685 -0.7473 32 1 4.1021 -2.1657 -0.0109 33 1 1.2425 -2.8107 -1.0410 34 1 2.0091 -3.2712 0.4980 35 1 0.4763 -2.3662 0.5029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = 39.101636 kcal Electronic energy + Delta-G solvation = -17248.446382 eV Core-core repulsion = 14631.773566 eV Total energy + Delta-G solvation = -2616.672816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.93015 -39.13243 -36.74225 -34.25867 -32.92167 -32.40807 -30.67913 -27.66189 -27.44587 -26.93712 -24.06452 -23.23367 -21.73379 -20.98745 -18.69123 -17.87227 -17.29731 -16.58381 -16.15990 -16.02731 -15.24942 -15.05510 -14.82796 -14.48960 -14.36271 -13.71962 -13.51244 -13.38230 -13.08902 -12.97174 -12.90988 -12.78899 -12.47699 -12.30437 -12.23178 -11.98772 -11.77046 -11.59939 -10.96013 -10.83797 -10.65238 -8.96920 -8.84302 -8.31075 -6.49891 0.09643 0.66948 1.38212 1.40084 1.49600 1.94707 2.07451 2.35988 2.92120 2.97970 3.42455 3.79255 4.03677 4.11382 4.30399 4.43446 4.46489 4.59300 4.69386 4.76304 4.77975 4.81206 4.90221 4.95725 4.99112 5.06823 5.27089 5.30132 5.34648 5.48053 5.66266 5.70419 5.74891 5.78987 5.99275 6.10108 6.34359 6.64544 7.04242 7.22840 8.72789 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030086 B = 0.006338 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.457335 B = 4416.417550 C = 4734.881242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.097 4.097 3 C -0.082 4.082 4 C 0.011 3.989 5 N -0.538 5.538 6 C 0.259 3.741 7 N -0.467 5.467 8 C 0.266 3.734 9 H 0.029 0.971 10 C -0.136 4.136 11 C -0.553 4.553 12 H 0.054 0.946 13 C 0.032 3.968 14 N -0.906 5.906 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.015 3.985 20 C -0.126 4.126 21 C -0.076 4.076 22 C -0.106 4.106 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.222 0.778 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.026 0.974 31 H 0.272 0.728 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.237 0.405 1.630 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.100 4.100 3 C -0.101 4.101 4 C -0.109 4.109 5 N -0.259 5.259 6 C -0.026 4.026 7 N -0.153 5.153 8 C 0.166 3.834 9 H 0.047 0.953 10 C -0.195 4.195 11 C -0.591 4.591 12 H 0.072 0.928 13 C -0.170 4.170 14 N -0.543 5.543 15 Si 0.791 3.209 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.096 4.096 20 C -0.146 4.146 21 C -0.078 4.078 22 C -0.162 4.162 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.155 0.845 27 H 0.238 0.762 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.139 0.995 1.679 12.295 hybrid contribution 1.578 -0.738 -0.706 1.880 sum -10.561 0.257 0.973 10.609 Atomic orbital electron populations 1.20810 0.87797 1.03922 1.03355 1.19588 0.97966 0.90917 1.01527 1.20038 0.89104 0.99263 1.01722 1.19551 0.95231 0.88480 1.07601 1.70400 0.98498 1.31661 1.25332 1.25435 0.98290 0.81312 0.97564 1.46203 1.05496 1.08106 1.55489 1.19021 0.81494 0.86800 0.96091 0.95340 1.21960 1.00838 1.02054 0.94628 1.21392 1.10591 1.20346 1.06809 0.92770 1.25582 0.97836 0.94017 0.99571 1.69940 1.26823 1.20938 1.36629 0.85420 0.78577 0.77987 0.78893 1.19208 1.20269 1.20208 1.19444 0.84773 0.97738 1.07640 1.20043 0.94317 0.94366 1.05909 1.19836 0.91356 0.96978 0.99623 1.20835 1.00172 0.91955 1.03258 0.89948 0.89728 0.90767 0.84454 0.76202 0.89633 0.93379 0.95483 0.91890 0.87022 0.90135 0.91626 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 9.16 71.24 0.65 -1.21 16 2 C -0.10 -2.79 5.84 -20.12 -0.12 -2.90 16 3 C -0.08 -2.79 9.67 22.25 0.22 -2.57 16 4 C 0.01 0.46 7.23 39.45 0.29 0.74 16 5 N -0.54 -23.57 11.27 -192.03 -2.16 -25.73 16 6 C 0.26 11.19 11.58 180.05 2.08 13.27 16 7 N -0.47 -21.67 2.66 -501.71 -1.33 -23.00 16 8 C 0.27 13.18 2.98 44.25 0.13 13.32 16 9 H 0.03 1.55 7.63 -2.39 -0.02 1.53 16 10 C -0.14 -6.25 9.02 71.98 0.65 -5.60 16 11 C -0.55 -29.10 8.51 25.60 0.22 -28.88 16 12 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 13 C 0.03 1.64 5.30 84.65 0.45 2.09 16 14 N -0.91 -47.94 11.32 21.45 0.24 -47.70 16 15 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 19 C 0.02 0.67 6.87 38.85 0.27 0.94 16 20 C -0.13 -4.87 9.53 22.32 0.21 -4.66 16 21 C -0.08 -2.32 5.88 -19.83 -0.12 -2.44 16 22 C -0.11 -2.24 9.16 71.24 0.65 -1.58 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.08 1.24 6.66 -2.39 -0.02 1.22 16 25 H 0.07 1.20 8.07 -2.38 -0.02 1.18 16 26 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.22 8.19 8.06 -2.91 -0.02 8.17 16 28 H 0.09 4.23 6.07 -2.39 -0.01 4.21 16 29 H 0.05 2.06 7.95 -2.39 -0.02 2.04 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.27 13.57 8.31 -92.70 -0.77 12.80 16 32 H 0.11 4.35 7.76 -2.91 -0.02 4.32 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.37 8.08 -2.39 -0.02 1.36 16 35 H 0.09 1.48 6.66 -2.39 -0.02 1.46 16 Total: -1.00 -61.30 292.30 5.43 -55.87 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.08 Total: 16.74 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 5.58 Total: -19.48 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -3.26 Total: -96.43 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -61.30 5.43 -55.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.974 kcal (2) G-P(sol) polarization free energy of solvation -61.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds