Wall clock time and date at job start Mon Mar 30 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36791 * 125.07754 * 264.69897 * 12 11 10 14 14 C 1.34244 * 109.93986 * 179.84891 * 13 12 11 15 15 C 1.46504 * 107.02663 * 0.40107 * 14 13 12 16 16 C 1.39661 * 133.92224 * 179.76020 * 15 14 13 17 17 C 1.38205 * 119.59098 * 179.97438 * 16 15 14 18 18 N 1.39971 * 119.88965 * 180.02562 * 17 16 15 19 19 C 1.39422 * 120.22511 * 359.97438 * 17 16 15 20 20 C 1.37656 * 120.60377 * 0.04695 * 19 17 16 21 21 C 1.37939 * 125.07413 * 84.99876 * 12 11 10 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.07999 * 125.03213 * 359.97438 * 13 12 11 30 30 H 1.08002 * 126.49081 * 180.13328 * 14 13 12 31 31 H 1.08000 * 120.20392 * 0.02562 * 16 15 14 32 32 H 0.96999 * 119.99469 * 359.97438 * 18 17 16 33 33 H 0.97001 * 119.99937 * 180.02562 * 18 17 16 34 34 H 1.07997 * 119.70130 * 180.02562 * 19 17 16 35 35 H 1.07997 * 119.99104 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0398 -4.0179 -0.0014 13 6 6.3993 -4.7250 1.1130 14 6 6.7976 -5.9585 0.7638 15 6 6.6933 -6.0461 -0.6949 16 6 6.9624 -7.0509 -1.6268 17 6 6.7515 -6.8092 -2.9711 18 7 7.0186 -7.8119 -3.9104 19 6 6.2726 -5.5702 -3.3948 20 6 6.0050 -4.5735 -2.4838 21 6 6.2113 -4.7976 -1.1263 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8910 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8908 27 1 5.9148 -2.1229 -0.8909 28 1 5.9148 -2.1228 0.8890 29 1 6.3656 -4.3475 2.1243 30 1 7.1356 -6.7373 1.4313 31 1 7.3321 -8.0112 -1.2989 32 1 7.3514 -8.6746 -3.6174 33 1 6.8715 -7.6439 -4.8544 34 1 6.1105 -5.3906 -4.4473 35 1 5.6347 -3.6174 -2.8229 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:15 Heat of formation + Delta-G solvation = 47.658099 kcal Electronic energy + Delta-G solvation = -16537.585211 eV Core-core repulsion = 13921.283432 eV Total energy + Delta-G solvation = -2616.301780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96914 -37.62013 -34.84234 -33.26810 -32.60677 -31.04839 -28.94419 -27.89047 -26.38381 -23.24989 -22.47789 -21.04815 -20.33167 -19.83926 -17.27488 -16.77357 -16.57425 -16.21736 -15.20198 -14.49932 -14.44365 -14.22589 -13.50461 -13.37685 -12.93911 -12.72088 -12.55283 -12.46815 -12.21902 -11.83844 -11.67999 -11.17020 -10.86561 -10.64191 -10.10694 -9.94369 -9.87986 -9.74924 -9.28753 -9.06320 -8.58814 -7.61782 -6.87029 -6.08432 -4.07436 1.34724 2.02511 2.99948 3.19776 3.26667 3.34410 3.36265 3.96589 4.18146 4.40295 4.90932 5.02252 5.12015 5.22259 5.25522 5.55563 5.56838 5.65619 5.77965 5.81674 5.89891 6.08153 6.25114 6.33064 6.46032 6.49951 6.53780 6.73749 6.87245 7.07956 7.18199 7.28372 7.43175 7.63501 7.69039 7.73910 7.84903 8.49044 8.96437 9.52965 11.05019 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.004673 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.374879 B = 5990.128523 C = 6403.108633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.117 4.117 11 C 0.104 3.896 12 N -0.476 5.476 13 C 0.068 3.932 14 C -0.233 4.233 15 C -0.062 4.062 16 C -0.168 4.168 17 C 0.183 3.817 18 N -0.888 5.888 19 C -0.168 4.168 20 C -0.076 4.076 21 C 0.055 3.945 22 H 0.264 0.736 23 H 0.017 0.983 24 H 0.013 0.987 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.114 0.886 32 H 0.393 0.607 33 H 0.393 0.607 34 H 0.120 0.880 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.192 -11.710 -3.611 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.155 4.155 11 C -0.017 4.017 12 N -0.158 5.158 13 C -0.060 4.060 14 C -0.259 4.259 15 C -0.068 4.068 16 C -0.192 4.192 17 C 0.081 3.919 18 N -0.429 5.429 19 C -0.191 4.191 20 C -0.097 4.097 21 C -0.051 4.051 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.031 0.969 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.181 0.819 30 H 0.158 0.842 31 H 0.132 0.868 32 H 0.221 0.779 33 H 0.221 0.779 34 H 0.138 0.862 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.894 -11.179 -3.562 19.755 hybrid contribution 0.274 0.697 -0.213 0.779 sum 16.168 -10.481 -3.775 19.634 Atomic orbital electron populations 1.69914 1.06324 1.26945 1.50882 1.25038 0.94745 0.99173 0.94502 0.86769 0.80305 0.83604 0.78530 1.20247 1.21314 1.19046 1.21089 0.89271 0.94557 1.51085 0.91027 1.19522 0.97529 0.91415 0.96372 1.21871 0.90760 1.00585 1.02294 1.22096 0.97207 0.78993 1.03373 1.44211 1.54734 1.12462 1.04415 1.21813 1.00289 0.92412 0.91457 1.21489 1.13933 0.97616 0.92830 1.18887 1.01781 0.92814 0.93294 1.19677 1.10235 0.99105 0.90176 1.17411 0.96552 0.88897 0.89052 1.42334 1.77965 1.15042 1.07538 1.20228 1.07360 0.92575 0.98928 1.19868 1.00992 0.99432 0.89429 1.18117 1.06617 0.91883 0.88459 0.92665 0.96450 0.96892 0.92107 0.92113 0.90221 0.89729 0.81917 0.84246 0.86782 0.77948 0.77928 0.86194 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.12 -2.28 5.48 -26.73 -0.15 -2.43 16 11 C 0.10 1.64 6.00 -4.04 -0.02 1.61 16 12 N -0.48 -7.50 2.78 -114.39 -0.32 -7.82 16 13 C 0.07 0.95 11.27 -16.75 -0.19 0.76 16 14 C -0.23 -3.26 11.08 -37.66 -0.42 -3.67 16 15 C -0.06 -0.97 6.37 -105.14 -0.67 -1.64 16 16 C -0.17 -2.30 9.94 -39.06 -0.39 -2.69 16 17 C 0.18 2.33 6.75 -83.71 -0.56 1.77 16 18 N -0.89 -8.01 9.10 32.43 0.30 -7.72 16 19 C -0.17 -2.24 9.86 -39.35 -0.39 -2.62 16 20 C -0.08 -1.15 9.97 -39.47 -0.39 -1.54 16 21 C 0.05 0.89 6.81 -83.89 -0.57 0.32 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 29 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.39 2.84 8.84 -40.82 -0.36 2.47 16 33 H 0.39 2.83 8.84 -40.82 -0.36 2.47 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -32.36 298.35 -8.60 -40.96 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.88 Total: 4.21 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -4.30 Total: -23.81 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.75 Total: -42.57 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.36 -8.60 -40.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.617 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds