Wall clock time and date at job start Mon Mar 30 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36791 * 125.07754 * 264.69897 * 12 11 10 14 14 C 1.34244 * 109.93986 * 179.84891 * 13 12 11 15 15 C 1.46504 * 107.02663 * 0.40107 * 14 13 12 16 16 C 1.39661 * 133.92224 * 179.76020 * 15 14 13 17 17 C 1.38205 * 119.59098 * 179.97438 * 16 15 14 18 18 N 1.39971 * 119.88965 * 180.02562 * 17 16 15 19 19 C 1.39422 * 120.22511 * 359.97438 * 17 16 15 20 20 C 1.37656 * 120.60377 * 0.04695 * 19 17 16 21 21 C 1.37939 * 125.07413 * 84.99876 * 12 11 10 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 24 24 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.07999 * 125.03213 * 359.97438 * 13 12 11 30 30 H 1.08002 * 126.49081 * 180.13328 * 14 13 12 31 31 H 1.08000 * 120.20392 * 0.02562 * 16 15 14 32 32 H 0.96999 * 119.99469 * 359.97438 * 18 17 16 33 33 H 0.97001 * 119.99937 * 180.02562 * 18 17 16 34 34 H 1.07997 * 119.70130 * 180.02562 * 19 17 16 35 35 H 1.07997 * 119.99104 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 7 6.0398 -4.0179 -0.0014 13 6 6.3993 -4.7250 1.1130 14 6 6.7976 -5.9585 0.7638 15 6 6.6933 -6.0461 -0.6949 16 6 6.9624 -7.0509 -1.6268 17 6 6.7515 -6.8092 -2.9711 18 7 7.0186 -7.8119 -3.9104 19 6 6.2726 -5.5702 -3.3948 20 6 6.0050 -4.5735 -2.4838 21 6 6.2113 -4.7976 -1.1263 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8910 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8908 27 1 5.9148 -2.1229 -0.8909 28 1 5.9148 -2.1228 0.8890 29 1 6.3656 -4.3475 2.1243 30 1 7.1356 -6.7373 1.4313 31 1 7.3321 -8.0112 -1.2989 32 1 7.3514 -8.6746 -3.6174 33 1 6.8715 -7.6439 -4.8544 34 1 6.1105 -5.3906 -4.4473 35 1 5.6347 -3.6174 -2.8229 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:15 Heat of formation + Delta-G solvation = 27.976509 kcal Electronic energy + Delta-G solvation = -16538.438669 eV Core-core repulsion = 13921.283432 eV Total energy + Delta-G solvation = -2617.155238 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.04090 -38.63798 -36.43482 -34.58885 -34.09990 -32.55009 -30.19672 -29.00291 -27.86614 -24.81474 -23.56715 -22.26598 -21.91999 -20.95108 -19.00677 -18.10306 -17.63319 -17.25978 -16.35098 -16.06747 -15.90669 -15.68480 -14.77364 -14.66262 -14.41905 -13.99983 -13.87390 -13.61982 -13.32250 -13.26424 -13.13597 -12.68617 -12.53103 -11.86714 -11.80735 -11.64734 -11.56020 -11.39958 -10.82868 -10.77899 -10.18337 -8.67143 -8.30618 -7.86891 -6.36393 0.28631 0.95351 1.37207 1.39371 1.51176 1.92844 2.09564 2.35990 3.04869 3.10522 3.16489 3.83541 3.88766 4.07710 4.16622 4.21428 4.44101 4.50690 4.55117 4.71139 4.80115 4.85680 4.93794 4.96539 5.12803 5.23877 5.42064 5.47346 5.49479 5.51530 5.62826 5.87142 6.02807 6.25084 6.38185 6.57427 6.72143 6.77325 7.17654 7.28330 8.86705 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.004673 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.374879 B = 5990.128523 C = 6403.108633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.238 1.238 7 C -0.538 4.538 8 H 0.023 0.977 9 C -0.006 4.006 10 C -0.105 4.105 11 C 0.116 3.884 12 N -0.487 5.487 13 C 0.059 3.941 14 C -0.240 4.240 15 C -0.083 4.083 16 C -0.182 4.182 17 C 0.185 3.815 18 N -0.873 5.873 19 C -0.173 4.173 20 C -0.096 4.096 21 C 0.023 3.977 22 H 0.267 0.733 23 H 0.032 0.968 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.192 0.808 30 H 0.162 0.838 31 H 0.132 0.868 32 H 0.404 0.596 33 H 0.404 0.596 34 H 0.141 0.859 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.705 -11.419 -3.728 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.161 1.161 7 C -0.576 4.576 8 H 0.041 0.959 9 C -0.044 4.044 10 C -0.143 4.143 11 C -0.006 4.006 12 N -0.170 5.170 13 C -0.067 4.067 14 C -0.265 4.265 15 C -0.089 4.089 16 C -0.206 4.206 17 C 0.081 3.919 18 N -0.416 5.416 19 C -0.195 4.195 20 C -0.117 4.117 21 C -0.082 4.082 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.209 0.791 30 H 0.180 0.820 31 H 0.150 0.850 32 H 0.233 0.767 33 H 0.233 0.767 34 H 0.159 0.841 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.438 -10.943 -3.700 21.758 hybrid contribution -0.578 0.430 -0.245 0.760 sum 17.860 -10.513 -3.945 21.097 Atomic orbital electron populations 1.70089 1.08589 1.28303 1.52491 1.26116 0.95664 1.03876 0.93858 0.85566 0.79684 0.77517 0.79312 1.19120 1.21133 1.16080 1.21470 0.92346 0.92885 1.50869 0.95904 1.19448 0.93742 0.93891 0.97336 1.21648 0.94027 0.98016 1.00619 1.21896 0.93844 0.79775 1.05044 1.44229 1.55402 1.12460 1.04881 1.22355 0.99748 0.92439 0.92195 1.21850 1.13756 0.98312 0.92592 1.19294 1.02094 0.93062 0.94432 1.19944 1.10571 0.99614 0.90487 1.17533 0.95538 0.89377 0.89466 1.42293 1.76929 1.14713 1.07633 1.20518 1.06738 0.92490 0.99782 1.20057 1.01870 1.00099 0.89643 1.18457 1.07966 0.92707 0.89073 0.92451 0.94978 0.95614 0.93405 0.94312 0.89321 0.87274 0.79146 0.82050 0.85038 0.76672 0.76651 0.84108 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.96 43.34 27.47 68.60 1.88 45.22 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 7 C -0.54 -31.33 9.66 25.60 0.25 -31.08 16 8 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 9 C -0.01 -0.28 4.04 29.85 0.12 -0.16 16 10 C -0.10 -4.08 5.48 30.59 0.17 -3.91 16 11 C 0.12 3.45 6.00 86.38 0.52 3.97 16 12 N -0.49 -14.85 2.78 -515.80 -1.44 -16.29 16 13 C 0.06 1.56 11.27 83.01 0.94 2.50 16 14 C -0.24 -6.37 11.08 23.51 0.26 -6.11 16 15 C -0.08 -2.52 6.37 -20.20 -0.13 -2.65 16 16 C -0.18 -4.76 9.94 22.61 0.22 -4.53 16 17 C 0.19 4.43 6.75 38.12 0.26 4.68 16 18 N -0.87 -13.72 9.10 -51.30 -0.47 -14.19 16 19 C -0.17 -4.41 9.86 22.42 0.22 -4.19 16 20 C -0.10 -2.87 9.97 22.34 0.22 -2.65 16 21 C 0.02 0.75 6.81 38.97 0.27 1.01 16 22 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 24 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.11 2.72 8.12 -2.39 -0.02 2.70 16 29 H 0.19 3.70 8.06 -2.91 -0.02 3.67 16 30 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 31 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.40 4.80 8.84 -92.71 -0.82 3.98 16 33 H 0.40 4.78 8.84 -92.71 -0.82 3.96 16 34 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -71.86 298.35 3.46 -68.40 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.60 Total: 19.65 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 3.78 Total: -42.59 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -1.60 Total: -90.69 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -71.86 3.46 -68.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.381 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds