Wall clock time and date at job start Mon Mar 30 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.37002 * 125.07411 * 265.02397 * 12 11 10 14 14 C 1.34174 * 109.91322 * 179.97438 * 13 12 11 15 15 C 1.46574 * 107.01966 * 0.02562 * 14 13 12 16 16 C 1.39665 * 133.91364 * 179.97438 * 15 14 13 17 17 C 1.36524 * 119.86967 * 179.97438 * 16 15 14 18 18 C 1.39449 * 120.45384 * 359.97438 * 17 16 15 19 19 N 1.39803 * 119.74190 * 180.02562 * 18 17 16 20 20 C 1.38377 * 120.50223 * 0.02562 * 18 17 16 21 21 C 1.37707 * 125.06915 * 84.71901 * 12 11 10 22 22 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.07995 * 125.03811 * 359.97438 * 13 12 11 30 30 H 1.07997 * 126.49110 * 180.02562 * 14 13 12 31 31 H 1.08002 * 120.06484 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.77147 * 180.02562 * 17 16 15 33 33 H 0.96996 * 120.00740 * 359.97438 * 19 18 17 34 34 H 0.97006 * 119.99156 * 180.02562 * 19 18 17 35 35 H 1.08006 * 120.13611 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0398 -4.0178 -0.0015 13 6 6.3949 -4.7267 1.1158 14 6 6.7970 -5.9583 0.7670 15 6 6.6921 -6.0466 -0.6924 16 6 6.9606 -7.0521 -1.6238 17 6 6.7541 -6.8202 -2.9532 18 6 6.2757 -5.5850 -3.3892 19 7 6.0690 -5.3639 -4.7541 20 6 6.0040 -4.5768 -2.4813 21 6 6.2049 -4.7993 -1.1233 22 1 -0.4851 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8744 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8907 26 1 3.6585 -3.1501 0.8892 27 1 5.9156 -2.1223 0.8873 28 1 5.9141 -2.1230 -0.8927 29 1 6.3566 -4.3500 2.1272 30 1 7.1342 -6.7371 1.4349 31 1 7.3301 -8.0115 -1.2929 32 1 6.9618 -7.5990 -3.6720 33 1 6.2586 -6.0679 -5.3938 34 1 5.7367 -4.5059 -5.0615 35 1 5.6332 -3.6225 -2.8255 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:55 Heat of formation + Delta-G solvation = 26.947001 kcal Electronic energy + Delta-G solvation = -16626.068953 eV Core-core repulsion = 14008.869073 eV Total energy + Delta-G solvation = -2617.199880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.04899 -38.66812 -36.50784 -34.84422 -33.89912 -32.21395 -30.93436 -28.43491 -28.02134 -25.01156 -23.37068 -22.27035 -22.01800 -20.93959 -19.03780 -18.11972 -17.65377 -17.12625 -16.39447 -16.10851 -15.89689 -15.70076 -14.79090 -14.72377 -14.43780 -14.12126 -14.00448 -13.71405 -13.35789 -13.28022 -12.74852 -12.60476 -12.53441 -11.93092 -11.83677 -11.70588 -11.58202 -11.42645 -10.91053 -10.79766 -10.05596 -8.68678 -8.32100 -7.95614 -6.38062 0.41852 0.91301 1.35611 1.37853 1.49744 1.94923 2.06873 2.34504 3.03188 3.10947 3.13520 3.83570 3.91575 4.08754 4.16046 4.30747 4.41044 4.49916 4.57542 4.71464 4.78214 4.83731 4.91269 4.93996 5.14381 5.21086 5.39273 5.43976 5.46678 5.60837 5.69751 5.88887 6.06591 6.23345 6.36899 6.57397 6.69798 6.71110 7.09338 7.26684 8.85189 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027441 B = 0.005120 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.108170 B = 5467.872601 C = 6041.348782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.239 1.239 7 C -0.538 4.538 8 H 0.023 0.977 9 C -0.006 4.006 10 C -0.103 4.103 11 C 0.116 3.884 12 N -0.490 5.490 13 C 0.026 3.974 14 C -0.205 4.205 15 C -0.188 4.188 16 C -0.032 4.032 17 C -0.217 4.217 18 C 0.230 3.770 19 N -0.869 5.869 20 C -0.248 4.248 21 C 0.122 3.878 22 H 0.267 0.733 23 H 0.032 0.968 24 H 0.024 0.976 25 H 0.036 0.964 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.188 0.812 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.409 0.591 34 H 0.402 0.598 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.325 -10.710 -4.355 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.162 1.162 7 C -0.576 4.576 8 H 0.041 0.959 9 C -0.044 4.044 10 C -0.142 4.142 11 C -0.005 4.005 12 N -0.173 5.173 13 C -0.097 4.097 14 C -0.230 4.230 15 C -0.194 4.194 16 C -0.051 4.051 17 C -0.239 4.239 18 C 0.124 3.876 19 N -0.410 5.410 20 C -0.275 4.275 21 C 0.014 3.986 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.104 0.896 29 H 0.205 0.795 30 H 0.182 0.818 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.239 0.761 34 H 0.230 0.770 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 18.092 -10.306 -4.279 21.257 hybrid contribution -0.752 0.907 -0.379 1.238 sum 17.340 -9.399 -4.658 20.266 Atomic orbital electron populations 1.70086 1.08571 1.28336 1.52429 1.26102 0.95660 1.03839 0.93810 0.85571 0.79669 0.77549 0.79324 1.19105 1.20997 1.16186 1.21455 0.92271 0.92916 1.50965 0.95909 1.19440 0.93824 0.93822 0.97274 1.21633 0.93981 0.98061 1.00524 1.21875 0.93897 0.79922 1.04828 1.44292 1.55688 1.12332 1.05033 1.22268 1.02660 0.92902 0.91904 1.21891 1.10540 0.97810 0.92738 1.19465 1.10512 0.94617 0.94782 1.20345 0.95517 0.97767 0.91467 1.20435 1.10136 0.96733 0.96565 1.17465 0.92535 0.92735 0.84911 1.42408 1.75900 1.19516 1.03128 1.19354 1.17328 1.00826 0.90005 1.18251 1.00237 0.91668 0.88446 0.92406 0.94977 0.95736 0.94489 0.93360 0.87337 0.89607 0.79542 0.81760 0.83678 0.83663 0.76111 0.76991 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.00 0.14 5.47 84.65 0.46 0.61 16 3 Si 0.96 43.57 27.47 68.60 1.88 45.46 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 7 C -0.54 -31.59 9.66 25.60 0.25 -31.34 16 8 H 0.02 1.50 7.99 -2.91 -0.02 1.47 16 9 C -0.01 -0.26 4.04 29.84 0.12 -0.14 16 10 C -0.10 -4.14 5.48 30.59 0.17 -3.97 16 11 C 0.12 3.60 6.00 86.38 0.52 4.12 16 12 N -0.49 -15.43 2.78 -515.86 -1.44 -16.86 16 13 C 0.03 0.71 11.28 82.96 0.94 1.64 16 14 C -0.21 -5.40 11.08 23.52 0.26 -5.14 16 15 C -0.19 -5.59 6.37 -20.16 -0.13 -5.72 16 16 C -0.03 -0.78 10.04 22.21 0.22 -0.56 16 17 C -0.22 -4.97 9.81 22.16 0.22 -4.75 16 18 C 0.23 5.91 6.75 38.19 0.26 6.17 16 19 N -0.87 -16.06 9.09 -51.28 -0.47 -16.53 16 20 C -0.25 -7.72 9.82 22.50 0.22 -7.50 16 21 C 0.12 4.02 6.81 39.02 0.27 4.29 16 22 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 23 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 24 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.11 2.84 8.12 -2.39 -0.02 2.82 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.19 3.83 8.06 -2.91 -0.02 3.80 16 30 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.41 5.27 8.84 -92.71 -0.82 4.45 16 34 H 0.40 6.84 8.83 -92.70 -0.82 6.02 16 35 H 0.11 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -72.45 298.24 3.45 -69.00 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -0.60 Total: 21.58 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 3.77 Total: -42.31 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -1.60 Total: -93.73 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.46 kcal Total: -72.45 3.45 -69.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.945 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds