Wall clock time and date at job start Mon Mar 30 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46793 * 99.21130 * 3 2 1 5 5 C 1.52999 * 109.47323 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47661 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47495 * 180.02562 * 6 5 4 8 8 C 1.38856 * 120.00242 * 179.97438 * 7 6 5 9 9 C 1.39569 * 119.83969 * 359.72860 * 8 7 6 10 10 C 1.36337 * 120.15826 * 179.71856 * 9 8 7 11 11 C 1.40889 * 119.83550 * 0.55096 * 10 9 8 12 12 C 1.41136 * 120.15484 * 179.70496 * 11 10 9 13 13 H 1.08001 * 120.00078 * 204.62917 * 12 11 10 14 14 C 1.39868 * 120.00297 * 24.61945 * 12 11 10 15 15 N 1.30900 * 119.99549 * 17.96677 * 14 12 11 16 16 Si 1.86800 * 120.00249 * 197.95894 * 14 12 11 17 17 H 1.48498 * 109.47024 * 90.00065 * 16 14 12 18 18 H 1.48499 * 109.47253 * 210.00337 * 16 14 12 19 19 H 1.48507 * 109.46929 * 330.00396 * 16 14 12 20 20 C 1.40885 * 119.69046 * 359.71617 * 11 10 9 21 21 C 1.36339 * 119.83736 * 0.02562 * 20 11 10 22 22 H 1.08990 * 109.47152 * 339.20799 * 3 2 1 23 23 H 1.08996 * 109.47048 * 219.20717 * 3 2 1 24 24 H 1.09003 * 109.47407 * 59.99710 * 4 3 2 25 25 H 1.09004 * 109.47217 * 299.99670 * 4 3 2 26 26 H 1.09003 * 109.46786 * 59.99733 * 5 4 3 27 27 H 1.09004 * 109.47034 * 300.00185 * 5 4 3 28 28 H 1.08994 * 109.47013 * 59.99862 * 6 5 4 29 29 H 1.09004 * 109.47110 * 300.00215 * 6 5 4 30 30 H 0.97000 * 119.99819 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.91755 * 359.97438 * 9 8 7 32 32 H 1.07998 * 120.08098 * 180.27178 * 10 9 8 33 33 H 0.97000 * 119.99705 * 180.02562 * 15 14 12 34 34 H 1.08004 * 120.08111 * 179.97438 * 20 11 10 35 35 H 1.08002 * 119.92155 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1179 0.2318 -1.4239 5 6 4.6479 0.2331 -1.4239 6 6 5.1578 0.4636 -2.8479 7 7 6.6227 0.4643 -2.8480 8 6 7.3169 0.6561 -4.0352 9 6 6.6156 0.8422 -5.2275 10 6 7.2905 1.0367 -6.3959 11 6 8.6994 1.0380 -6.3998 12 6 9.4050 1.2325 -7.6065 13 1 10.4114 0.8549 -7.7105 14 6 8.8007 1.9142 -8.6679 15 7 7.7525 2.6673 -8.4498 16 14 9.4896 1.7501 -10.3965 17 1 8.8353 0.6078 -11.0837 18 1 9.2276 2.9998 -11.1545 19 1 10.9537 1.5120 -10.3252 20 6 9.4007 0.8439 -5.1933 21 6 8.7126 0.6558 -4.0315 22 1 2.9718 -0.9598 0.3648 23 1 2.9710 0.7971 0.6496 24 1 2.7541 1.1924 -1.7887 25 1 2.7549 -0.5647 -2.0736 26 1 5.0120 -0.7273 -1.0590 27 1 5.0105 1.0298 -0.7743 28 1 4.7936 1.4238 -3.2132 29 1 4.7951 -0.3333 -3.4972 30 1 7.1078 0.3308 -2.0187 31 1 5.5356 0.8362 -5.2237 32 1 6.7466 1.1850 -7.3171 33 1 7.3331 3.1397 -9.1860 34 1 10.4807 0.8433 -5.1891 35 1 9.2488 0.5065 -3.1059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:23 Heat of formation + Delta-G solvation = 28.876144 kcal Electronic energy + Delta-G solvation = -15881.998120 eV Core-core repulsion = 13264.881893 eV Total energy + Delta-G solvation = -2617.116226 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.11159 -37.35128 -35.92757 -34.23371 -32.79301 -30.00351 -29.44609 -27.96756 -24.85662 -23.40652 -21.85635 -20.64179 -19.89914 -17.72237 -17.19610 -16.17397 -16.00988 -15.14697 -14.87265 -14.54818 -14.05710 -13.75861 -13.32996 -12.99539 -12.71913 -12.65260 -12.23184 -11.92749 -11.89968 -11.81806 -11.52818 -11.21813 -11.06393 -11.01388 -10.83480 -10.71259 -10.43529 -9.68298 -9.27563 -9.21790 -8.52419 -7.48730 -6.63695 -6.38286 -4.02675 2.48534 2.52468 2.92284 3.10741 3.15933 3.19193 3.36466 3.66432 4.06121 4.29849 4.63557 4.64694 4.77388 5.01238 5.13846 5.32099 5.33648 5.62040 5.66460 5.83340 5.86553 6.17730 6.20412 6.27761 6.33932 6.94140 6.94800 7.21116 7.29626 7.36768 7.56021 7.69806 7.85205 8.16201 8.29774 8.50091 8.71443 8.80868 9.06914 9.16048 10.38164 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.042177 B = 0.003489 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.712910 B = 8022.984928 C = 8591.585270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.207 3.793 3 C -0.026 4.026 4 C -0.114 4.114 5 C -0.128 4.128 6 C 0.137 3.863 7 N -0.764 5.764 8 C 0.091 3.909 9 C -0.164 4.164 10 C -0.125 4.125 11 C 0.074 3.926 12 C -0.467 4.467 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.808 5.808 16 Si 0.903 3.097 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.265 1.265 20 C -0.188 4.188 21 C -0.159 4.159 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.384 0.616 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.276 0.724 34 H 0.091 0.909 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -3.714 11.589 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.110 4.110 3 C -0.066 4.066 4 C -0.154 4.154 5 C -0.166 4.166 6 C 0.011 3.989 7 N -0.400 5.400 8 C -0.006 4.006 9 C -0.186 4.186 10 C -0.145 4.145 11 C 0.071 3.929 12 C -0.498 4.498 13 H 0.091 0.909 14 C -0.141 4.141 15 N -0.435 5.435 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.189 1.189 20 C -0.208 4.208 21 C -0.181 4.181 22 H 0.127 0.873 23 H 0.127 0.873 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.216 0.784 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.150 -3.530 11.370 13.888 hybrid contribution 0.866 0.030 -0.532 1.016 sum -6.285 -3.500 10.839 13.009 Atomic orbital electron populations 1.81245 1.13247 1.09024 1.08564 1.29337 0.95453 0.93062 0.93170 1.19361 0.81271 1.05656 1.00328 1.21472 0.95936 1.03664 0.94288 1.21735 0.94104 1.02732 0.97999 1.20978 0.82532 1.00285 0.95079 1.43835 1.03324 1.85452 1.07340 1.17344 0.90605 1.06875 0.85805 1.20099 0.97140 1.08816 0.92515 1.20941 0.94632 1.02405 0.96517 1.17503 0.91873 0.91529 0.91998 1.19377 1.01109 1.32355 0.96984 0.90934 1.25797 0.94474 0.93084 1.00730 1.69856 1.19201 1.21185 1.33250 0.86405 0.80287 0.78278 0.82202 1.19558 1.20600 1.18869 1.20551 0.97505 1.10365 0.92360 1.19808 0.91701 1.09407 0.97208 0.87299 0.87287 0.90702 0.90725 0.91134 0.91109 0.93463 0.93523 0.78421 0.89410 0.86408 0.91337 0.89064 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.43 18.54 42.16 0.78 -4.65 16 2 C 0.21 1.79 15.43 -20.76 -0.32 1.47 16 3 C -0.03 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -0.74 5.17 -26.73 -0.14 -0.88 16 5 C -0.13 -1.01 5.33 -26.73 -0.14 -1.15 16 6 C 0.14 1.77 4.89 -4.04 -0.02 1.75 16 7 N -0.76 -12.33 5.70 -58.50 -0.33 -12.66 16 8 C 0.09 1.93 6.67 -83.69 -0.56 1.37 16 9 C -0.16 -3.79 9.23 -39.77 -0.37 -4.16 16 10 C -0.12 -3.26 8.64 -39.26 -0.34 -3.60 16 11 C 0.07 1.99 5.57 -106.79 -0.60 1.40 16 12 C -0.47 -12.67 9.03 -37.87 -0.34 -13.01 16 13 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 14 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 15 N -0.81 -21.42 10.96 55.54 0.61 -20.82 16 16 Si 0.90 19.22 29.60 -169.99 -5.03 14.19 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.19 -4.62 9.74 -39.26 -0.38 -5.00 16 21 C -0.16 -3.51 9.82 -39.77 -0.39 -3.90 16 22 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.66 7.94 -51.93 -0.41 0.25 16 29 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 30 H 0.38 5.33 8.47 -40.82 -0.35 4.98 16 31 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 32 H 0.12 3.20 6.16 -52.49 -0.32 2.87 16 33 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 34 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -30.68 304.81 -8.01 -38.69 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.77 Total: 4.84 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -3.85 Total: -24.17 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 1.06 Total: -38.13 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.68 -8.01 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.564 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds