Wall clock time and date at job start Mon Mar 30 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46793 * 99.21130 * 3 2 1 5 5 C 1.52999 * 109.47323 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47661 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47495 * 180.02562 * 6 5 4 8 8 C 1.38856 * 120.00242 * 179.97438 * 7 6 5 9 9 C 1.39569 * 119.83969 * 359.72860 * 8 7 6 10 10 C 1.36337 * 120.15826 * 179.71856 * 9 8 7 11 11 C 1.40889 * 119.83550 * 0.55096 * 10 9 8 12 12 C 1.41136 * 120.15484 * 179.70496 * 11 10 9 13 13 H 1.08001 * 120.00078 * 204.62917 * 12 11 10 14 14 C 1.39868 * 120.00297 * 24.61945 * 12 11 10 15 15 N 1.30900 * 119.99549 * 17.96677 * 14 12 11 16 16 Si 1.86800 * 120.00249 * 197.95894 * 14 12 11 17 17 H 1.48498 * 109.47024 * 90.00065 * 16 14 12 18 18 H 1.48499 * 109.47253 * 210.00337 * 16 14 12 19 19 H 1.48507 * 109.46929 * 330.00396 * 16 14 12 20 20 C 1.40885 * 119.69046 * 359.71617 * 11 10 9 21 21 C 1.36339 * 119.83736 * 0.02562 * 20 11 10 22 22 H 1.08990 * 109.47152 * 339.20799 * 3 2 1 23 23 H 1.08996 * 109.47048 * 219.20717 * 3 2 1 24 24 H 1.09003 * 109.47407 * 59.99710 * 4 3 2 25 25 H 1.09004 * 109.47217 * 299.99670 * 4 3 2 26 26 H 1.09003 * 109.46786 * 59.99733 * 5 4 3 27 27 H 1.09004 * 109.47034 * 300.00185 * 5 4 3 28 28 H 1.08994 * 109.47013 * 59.99862 * 6 5 4 29 29 H 1.09004 * 109.47110 * 300.00215 * 6 5 4 30 30 H 0.97000 * 119.99819 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.91755 * 359.97438 * 9 8 7 32 32 H 1.07998 * 120.08098 * 180.27178 * 10 9 8 33 33 H 0.97000 * 119.99705 * 180.02562 * 15 14 12 34 34 H 1.08004 * 120.08111 * 179.97438 * 20 11 10 35 35 H 1.08002 * 119.92155 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1179 0.2318 -1.4239 5 6 4.6479 0.2331 -1.4239 6 6 5.1578 0.4636 -2.8479 7 7 6.6227 0.4643 -2.8480 8 6 7.3169 0.6561 -4.0352 9 6 6.6156 0.8422 -5.2275 10 6 7.2905 1.0367 -6.3959 11 6 8.6994 1.0380 -6.3998 12 6 9.4050 1.2325 -7.6065 13 1 10.4114 0.8549 -7.7105 14 6 8.8007 1.9142 -8.6679 15 7 7.7525 2.6673 -8.4498 16 14 9.4896 1.7501 -10.3965 17 1 8.8353 0.6078 -11.0837 18 1 9.2276 2.9998 -11.1545 19 1 10.9537 1.5120 -10.3252 20 6 9.4007 0.8439 -5.1933 21 6 8.7126 0.6558 -4.0315 22 1 2.9718 -0.9598 0.3648 23 1 2.9710 0.7971 0.6496 24 1 2.7541 1.1924 -1.7887 25 1 2.7549 -0.5647 -2.0736 26 1 5.0120 -0.7273 -1.0590 27 1 5.0105 1.0298 -0.7743 28 1 4.7936 1.4238 -3.2132 29 1 4.7951 -0.3333 -3.4972 30 1 7.1078 0.3308 -2.0187 31 1 5.5356 0.8362 -5.2237 32 1 6.7466 1.1850 -7.3171 33 1 7.3331 3.1397 -9.1860 34 1 10.4807 0.8433 -5.1891 35 1 9.2488 0.5065 -3.1059 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:23 Heat of formation + Delta-G solvation = 11.209548 kcal Electronic energy + Delta-G solvation = -15882.764201 eV Core-core repulsion = 13264.881893 eV Total energy + Delta-G solvation = -2617.882308 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75617 -38.14149 -37.11601 -35.57250 -34.28595 -31.32942 -31.25433 -29.37804 -26.36171 -24.72531 -23.11202 -21.97091 -21.53122 -19.12260 -18.36016 -17.61361 -16.78940 -16.75083 -16.30520 -15.60649 -15.35548 -14.86447 -14.56015 -14.28209 -14.03577 -13.96404 -13.78450 -13.50621 -13.12473 -12.81732 -12.74661 -12.68219 -12.33492 -12.19980 -12.07857 -11.83313 -11.53164 -11.40717 -11.13318 -11.01459 -10.23103 -9.36888 -8.52791 -8.10811 -5.97664 1.13482 1.21966 1.41094 1.53516 1.61118 1.82618 1.88636 2.28694 2.86778 2.93962 3.25591 3.88441 4.02238 4.16165 4.44397 4.51021 4.55128 4.56865 4.64974 4.86718 4.90924 5.03406 5.06728 5.18440 5.20206 5.31297 5.45210 5.47420 5.51991 5.73418 5.84935 6.01146 6.22198 6.43094 6.67893 6.71008 6.92087 7.11222 7.21570 7.42128 8.50376 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.042177 B = 0.003489 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.712910 B = 8022.984928 C = 8591.585270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.235 3.765 3 C -0.018 4.018 4 C -0.111 4.111 5 C -0.113 4.113 6 C 0.127 3.873 7 N -0.751 5.751 8 C 0.113 3.887 9 C -0.178 4.178 10 C -0.145 4.145 11 C 0.032 3.968 12 C -0.506 4.506 13 H 0.067 0.933 14 C 0.030 3.970 15 N -0.843 5.843 16 Si 0.976 3.024 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.260 1.260 20 C -0.196 4.196 21 C -0.166 4.166 22 H 0.139 0.861 23 H 0.138 0.862 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.400 0.600 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.281 0.719 34 H 0.097 0.903 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -4.312 13.609 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C -0.081 4.081 3 C -0.058 4.058 4 C -0.151 4.151 5 C -0.150 4.150 6 C 0.003 3.997 7 N -0.387 5.387 8 C 0.013 3.987 9 C -0.200 4.200 10 C -0.166 4.166 11 C 0.029 3.971 12 C -0.537 4.537 13 H 0.085 0.915 14 C -0.181 4.181 15 N -0.471 5.471 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.196 1.196 19 H -0.184 1.184 20 C -0.216 4.216 21 C -0.188 4.188 22 H 0.157 0.843 23 H 0.156 0.844 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.235 0.765 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.821 -4.139 13.447 15.636 hybrid contribution 0.724 0.182 -0.961 1.217 sum -6.096 -3.957 12.487 14.448 Atomic orbital electron populations 1.81275 1.15635 1.11666 1.10887 1.30082 0.96106 0.90841 0.91053 1.19597 0.78295 1.08355 0.99504 1.21390 0.95026 1.03147 0.95495 1.21617 0.94574 1.04342 0.94505 1.21217 0.80434 0.99405 0.98670 1.43915 1.04792 1.83762 1.06181 1.17474 0.90777 1.03445 0.86979 1.20261 0.98063 1.09150 0.92505 1.20867 0.94648 1.04116 0.96931 1.17829 0.92561 0.93602 0.93120 1.19594 1.01447 1.34145 0.98533 0.91456 1.26607 0.94793 0.92223 1.04493 1.69924 1.20578 1.22053 1.34556 0.85301 0.79549 0.78492 0.76878 1.19039 1.19624 1.18434 1.20785 0.98069 1.10044 0.92730 1.20135 0.92255 1.08705 0.97713 0.84337 0.84442 0.91523 0.91348 0.89277 0.89473 0.94680 0.94305 0.76519 0.87849 0.88556 0.90858 0.88524 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.35 18.54 20.01 0.37 -11.98 16 2 C 0.24 3.57 15.43 89.44 1.38 4.95 16 3 C -0.02 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.11 -1.05 5.17 30.59 0.16 -0.90 16 5 C -0.11 -1.28 5.33 30.59 0.16 -1.12 16 6 C 0.13 2.93 4.89 86.38 0.42 3.36 16 7 N -0.75 -21.74 5.70 -339.00 -1.93 -23.67 16 8 C 0.11 4.60 6.67 38.67 0.26 4.86 16 9 C -0.18 -8.22 9.23 22.15 0.20 -8.01 16 10 C -0.15 -7.87 8.64 22.48 0.19 -7.67 16 11 C 0.03 1.77 5.57 -21.27 -0.12 1.65 16 12 C -0.51 -28.54 9.03 23.38 0.21 -28.33 16 13 H 0.07 3.69 7.91 -2.91 -0.02 3.66 16 14 C 0.03 1.62 5.13 85.23 0.44 2.05 16 15 N -0.84 -46.37 10.96 21.82 0.24 -46.13 16 16 Si 0.98 40.37 29.60 68.60 2.03 42.40 16 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 20 C -0.20 -9.70 9.74 22.47 0.22 -9.48 16 21 C -0.17 -7.01 9.82 22.15 0.22 -6.79 16 22 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 23 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.03 0.91 7.94 -2.39 -0.02 0.90 16 29 H 0.04 0.98 7.91 -2.38 -0.02 0.96 16 30 H 0.40 9.27 8.47 -92.71 -0.79 8.48 16 31 H 0.10 4.33 6.68 -2.91 -0.02 4.31 16 32 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 33 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 34 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -70.52 304.81 4.92 -65.59 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.30 Total: 19.15 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.91 Total: -45.36 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.32 Total: -81.78 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -70.52 4.92 -65.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.801 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds