Wall clock time and date at job start Mon Mar 30 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86799 * 119.99535 * 2 1 4 4 H 1.48501 * 109.47135 * 275.04097 * 3 2 1 5 5 H 1.48494 * 109.47598 * 35.04306 * 3 2 1 6 6 H 1.48502 * 109.46888 * 155.04442 * 3 2 1 7 7 C 1.39882 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99944 * 162.46139 * 7 2 1 9 9 C 1.41138 * 119.99919 * 342.45549 * 7 2 1 10 10 C 1.40883 * 120.15747 * 154.70628 * 9 7 2 11 11 C 1.36344 * 119.83023 * 180.02562 * 10 9 7 12 12 C 1.39527 * 120.16744 * 359.97438 * 11 10 9 13 13 N 1.39074 * 119.84062 * 180.02562 * 12 11 10 14 14 C 1.47097 * 121.18783 * 174.38986 * 13 12 11 15 15 C 1.53165 * 108.78833 * 229.57336 * 14 13 12 16 16 C 1.53097 * 109.50265 * 303.19195 * 15 14 13 17 17 C 1.52888 * 109.37810 * 62.13624 * 16 15 14 18 18 C 1.38226 * 121.18442 * 354.41608 * 13 12 11 19 19 N 1.29324 * 121.27329 * 313.29831 * 18 13 12 20 20 C 1.39528 * 120.32409 * 0.27678 * 12 11 10 21 21 C 1.36356 * 120.16506 * 359.44579 * 20 12 11 22 22 H 0.96993 * 120.00086 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.08530 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.91778 * 179.97438 * 11 10 9 25 25 H 1.09000 * 109.58566 * 349.36367 * 14 13 12 26 26 H 1.09004 * 109.58556 * 109.78310 * 14 13 12 27 27 H 1.09000 * 109.46629 * 63.19478 * 15 14 13 28 28 H 1.08996 * 109.46884 * 183.18977 * 15 14 13 29 29 H 1.09003 * 109.49969 * 182.21757 * 16 15 14 30 30 H 1.08998 * 109.49926 * 302.29377 * 16 15 14 31 31 H 1.08997 * 109.63071 * 185.72279 * 17 16 15 32 32 H 1.09001 * 109.50859 * 65.30813 * 17 16 15 33 33 H 0.96996 * 119.99841 * 180.02562 * 19 18 13 34 34 H 1.07998 * 119.91736 * 179.72213 * 20 12 11 35 35 H 1.07994 * 120.08342 * 180.25170 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3837 2.1080 -1.3947 5 1 1.4976 2.6196 0.8039 6 1 3.5896 1.4119 0.5907 7 6 2.0084 -1.2114 0.0005 8 1 3.0507 -1.2332 -0.2813 9 6 1.3520 -2.4051 0.3695 10 6 1.8186 -3.6459 -0.1074 11 6 1.1791 -4.7949 0.2529 12 6 0.0655 -4.7441 1.0921 13 7 -0.5813 -5.9203 1.4557 14 6 -1.6802 -5.9144 2.4335 15 6 -1.4079 -6.9913 3.4881 16 6 -1.2456 -8.3499 2.8012 17 6 -0.0404 -8.3025 1.8616 18 6 -0.2141 -7.1367 0.9114 19 7 -0.0312 -7.2750 -0.3613 20 6 -0.4054 -3.5184 1.5641 21 6 0.2273 -2.3615 1.2169 22 1 -0.4850 0.8400 -0.0004 23 1 2.6801 -3.6868 -0.7573 24 1 1.5353 -5.7469 -0.1122 25 1 -1.7360 -4.9379 2.9145 26 1 -2.6212 -6.1288 1.9269 27 1 -0.4941 -6.7466 4.0295 28 1 -2.2434 -7.0351 4.1867 29 1 -1.0910 -9.1223 3.5546 30 1 -2.1435 -8.5766 2.2265 31 1 0.0191 -9.2319 1.2953 32 1 0.8707 -8.1682 2.4447 33 1 0.2260 -8.1372 -0.7235 34 1 -1.2706 -3.4863 2.2097 35 1 -0.1360 -1.4140 1.5862 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:18 Heat of formation + Delta-G solvation = 45.828388 kcal Electronic energy + Delta-G solvation = -17176.806984 eV Core-core repulsion = 14560.425862 eV Total energy + Delta-G solvation = -2616.381122 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.41585 -37.05414 -34.05992 -33.84659 -32.47938 -29.42041 -29.07644 -28.17749 -25.13824 -23.82807 -22.14992 -20.75358 -20.23490 -18.56770 -17.25169 -16.71043 -15.24829 -15.10086 -14.81206 -14.46000 -13.78104 -13.76518 -13.61785 -12.93750 -12.75062 -12.60387 -12.00305 -11.73818 -11.35272 -11.28220 -11.05509 -10.91501 -10.82050 -10.62980 -10.50723 -10.09378 -9.69617 -9.27268 -9.17878 -8.85227 -8.35525 -7.45577 -6.67273 -6.42294 -4.08464 2.55236 2.96470 3.13729 3.15973 3.19594 3.39779 3.62395 4.03785 4.70370 4.76974 4.83359 4.92472 5.07628 5.35773 5.54875 5.66023 5.76070 5.83244 5.84833 5.92240 5.95733 6.11215 6.32409 6.35758 6.50583 6.91581 6.96107 7.19566 7.34844 7.52964 7.70516 7.77521 8.13512 8.21518 8.37965 8.53480 8.74353 8.79902 9.03360 9.12812 10.33811 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.047050 B = 0.005425 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.964531 B = 5160.426883 C = 5516.041727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.074 0.926 9 C 0.088 3.912 10 C -0.198 4.198 11 C -0.116 4.116 12 C 0.063 3.937 13 N -0.555 5.555 14 C 0.126 3.874 15 C -0.138 4.138 16 C -0.112 4.112 17 C -0.134 4.134 18 C 0.419 3.581 19 N -0.729 5.729 20 C -0.144 4.144 21 C -0.137 4.137 22 H 0.277 0.723 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.336 0.664 34 H 0.092 0.908 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 -10.890 6.872 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.092 0.908 9 C 0.085 3.915 10 C -0.218 4.218 11 C -0.137 4.137 12 C -0.030 4.030 13 N -0.269 5.269 14 C 0.002 3.998 15 C -0.177 4.177 16 C -0.151 4.151 17 C -0.177 4.177 18 C 0.136 3.864 19 N -0.351 5.351 20 C -0.165 4.165 21 C -0.157 4.157 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.152 0.848 34 H 0.109 0.891 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.129 -10.071 6.087 12.176 hybrid contribution 0.473 -0.191 0.245 0.566 sum -2.656 -10.262 6.332 12.347 Atomic orbital electron populations 1.69858 1.07435 1.28769 1.36823 1.25835 0.94667 1.01006 0.92574 0.86381 0.80748 0.81146 0.78876 1.19783 1.20208 1.18591 1.19429 0.97849 0.91302 1.40849 0.90777 1.17570 0.91989 0.92047 0.89911 1.20597 1.03273 0.92588 1.05319 1.20085 0.95924 0.97662 1.00037 1.17217 0.96599 0.83747 1.05397 1.43372 1.36682 1.02933 1.43900 1.21587 0.88733 1.00089 0.89348 1.21968 1.02681 0.94894 0.98135 1.21443 0.97720 0.97650 0.98270 1.21896 1.00145 0.96871 0.98766 1.21506 0.89861 0.86259 0.88795 1.69188 1.22596 1.31635 1.11727 1.20122 1.00694 0.91572 1.04111 1.20860 0.98800 0.96206 0.99851 0.91200 0.89005 0.88334 0.89177 0.92763 0.91040 0.90807 0.91571 0.91844 0.90735 0.89604 0.84850 0.89054 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.37 10.98 55.54 0.61 -20.76 16 2 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.20 29.59 -169.99 -5.03 14.16 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.71 9.03 -37.87 -0.34 -13.05 16 8 H 0.07 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.09 2.42 5.57 -106.80 -0.59 1.82 16 10 C -0.20 -5.13 9.74 -39.26 -0.38 -5.51 16 11 C -0.12 -2.82 8.92 -39.78 -0.35 -3.18 16 12 C 0.06 1.45 6.52 -83.61 -0.55 0.90 16 13 N -0.56 -10.42 3.03 -109.73 -0.33 -10.75 16 14 C 0.13 1.85 6.27 -3.63 -0.02 1.83 16 15 C -0.14 -1.54 6.04 -26.60 -0.16 -1.70 16 16 C -0.11 -1.15 5.95 -26.74 -0.16 -1.31 16 17 C -0.13 -1.62 6.15 -27.60 -0.17 -1.79 16 18 C 0.42 7.12 6.19 -153.05 -0.95 6.18 16 19 N -0.73 -13.39 12.02 33.30 0.40 -12.99 16 20 C -0.14 -3.39 9.20 -39.78 -0.37 -3.76 16 21 C -0.14 -3.62 8.63 -39.26 -0.34 -3.96 16 22 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 23 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 24 H 0.10 2.30 6.04 -52.48 -0.32 1.98 16 25 H 0.09 1.33 5.67 -51.93 -0.29 1.04 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.34 5.11 8.70 -40.82 -0.36 4.75 16 34 H 0.09 1.89 5.98 -52.49 -0.31 1.58 16 35 H 0.12 3.22 6.20 -52.49 -0.33 2.89 16 LS Contribution 284.00 15.07 4.28 4.28 Total: -1.00 -30.13 284.00 -9.08 -39.20 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.53 Total: 8.54 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -4.47 Total: -21.68 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.68 Total: -44.50 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.13 -9.08 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.033 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds