Wall clock time and date at job start Mon Mar 30 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86799 * 119.99535 * 2 1 4 4 H 1.48501 * 109.47135 * 275.04097 * 3 2 1 5 5 H 1.48494 * 109.47598 * 35.04306 * 3 2 1 6 6 H 1.48502 * 109.46888 * 155.04442 * 3 2 1 7 7 C 1.39882 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99944 * 162.46139 * 7 2 1 9 9 C 1.41138 * 119.99919 * 342.45549 * 7 2 1 10 10 C 1.40883 * 120.15747 * 154.70628 * 9 7 2 11 11 C 1.36344 * 119.83023 * 180.02562 * 10 9 7 12 12 C 1.39527 * 120.16744 * 359.97438 * 11 10 9 13 13 N 1.39074 * 119.84062 * 180.02562 * 12 11 10 14 14 C 1.47097 * 121.18783 * 174.38986 * 13 12 11 15 15 C 1.53165 * 108.78833 * 229.57336 * 14 13 12 16 16 C 1.53097 * 109.50265 * 303.19195 * 15 14 13 17 17 C 1.52888 * 109.37810 * 62.13624 * 16 15 14 18 18 C 1.38226 * 121.18442 * 354.41608 * 13 12 11 19 19 N 1.29324 * 121.27329 * 313.29831 * 18 13 12 20 20 C 1.39528 * 120.32409 * 0.27678 * 12 11 10 21 21 C 1.36356 * 120.16506 * 359.44579 * 20 12 11 22 22 H 0.96993 * 120.00086 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.08530 * 359.97438 * 10 9 7 24 24 H 1.08003 * 119.91778 * 179.97438 * 11 10 9 25 25 H 1.09000 * 109.58566 * 349.36367 * 14 13 12 26 26 H 1.09004 * 109.58556 * 109.78310 * 14 13 12 27 27 H 1.09000 * 109.46629 * 63.19478 * 15 14 13 28 28 H 1.08996 * 109.46884 * 183.18977 * 15 14 13 29 29 H 1.09003 * 109.49969 * 182.21757 * 16 15 14 30 30 H 1.08998 * 109.49926 * 302.29377 * 16 15 14 31 31 H 1.08997 * 109.63071 * 185.72279 * 17 16 15 32 32 H 1.09001 * 109.50859 * 65.30813 * 17 16 15 33 33 H 0.96996 * 119.99841 * 180.02562 * 19 18 13 34 34 H 1.07998 * 119.91736 * 179.72213 * 20 12 11 35 35 H 1.07994 * 120.08342 * 180.25170 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3837 2.1080 -1.3947 5 1 1.4976 2.6196 0.8039 6 1 3.5896 1.4119 0.5907 7 6 2.0084 -1.2114 0.0005 8 1 3.0507 -1.2332 -0.2813 9 6 1.3520 -2.4051 0.3695 10 6 1.8186 -3.6459 -0.1074 11 6 1.1791 -4.7949 0.2529 12 6 0.0655 -4.7441 1.0921 13 7 -0.5813 -5.9203 1.4557 14 6 -1.6802 -5.9144 2.4335 15 6 -1.4079 -6.9913 3.4881 16 6 -1.2456 -8.3499 2.8012 17 6 -0.0404 -8.3025 1.8616 18 6 -0.2141 -7.1367 0.9114 19 7 -0.0312 -7.2750 -0.3613 20 6 -0.4054 -3.5184 1.5641 21 6 0.2273 -2.3615 1.2169 22 1 -0.4850 0.8400 -0.0004 23 1 2.6801 -3.6868 -0.7573 24 1 1.5353 -5.7469 -0.1122 25 1 -1.7360 -4.9379 2.9145 26 1 -2.6212 -6.1288 1.9269 27 1 -0.4941 -6.7466 4.0295 28 1 -2.2434 -7.0351 4.1867 29 1 -1.0910 -9.1223 3.5546 30 1 -2.1435 -8.5766 2.2265 31 1 0.0191 -9.2319 1.2953 32 1 0.8707 -8.1682 2.4447 33 1 0.2260 -8.1372 -0.7235 34 1 -1.2706 -3.4863 2.2097 35 1 -0.1360 -1.4140 1.5862 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:17 Heat of formation + Delta-G solvation = 29.164918 kcal Electronic energy + Delta-G solvation = -17177.529566 eV Core-core repulsion = 14560.425862 eV Total energy + Delta-G solvation = -2617.103704 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84369 -38.77473 -35.72190 -35.13139 -34.05195 -31.34959 -30.74810 -29.49725 -26.88126 -25.13007 -23.66010 -22.24143 -21.94077 -19.98341 -19.19980 -18.22080 -17.00215 -16.32050 -16.30853 -15.89713 -15.22243 -14.97396 -14.81290 -14.53815 -14.33662 -14.11796 -13.68335 -13.59237 -13.04887 -12.75022 -12.65619 -12.34649 -12.18148 -11.84003 -11.73448 -11.64985 -11.36275 -11.13118 -10.95413 -10.35519 -9.95589 -9.43214 -8.59701 -8.20777 -6.09330 0.92862 1.15436 1.38170 1.41040 1.54664 1.68589 2.23482 2.27157 2.81515 3.71758 3.81554 3.88235 4.06108 4.09026 4.25411 4.42973 4.50666 4.64648 4.75826 4.79861 4.92139 4.95211 5.03531 5.08762 5.16010 5.18354 5.26778 5.40872 5.44259 5.65520 5.76205 5.91077 6.13382 6.35948 6.55538 6.70984 6.89088 7.02711 7.17035 7.51231 8.43635 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.047050 B = 0.005425 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.964531 B = 5160.426883 C = 5516.041727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.034 3.966 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.069 0.931 9 C 0.052 3.948 10 C -0.212 4.212 11 C -0.129 4.129 12 C 0.081 3.919 13 N -0.567 5.567 14 C 0.115 3.885 15 C -0.130 4.130 16 C -0.108 4.108 17 C -0.126 4.126 18 C 0.412 3.588 19 N -0.767 5.767 20 C -0.150 4.150 21 C -0.152 4.152 22 H 0.285 0.715 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.351 0.649 34 H 0.120 0.880 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -12.370 8.309 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.087 0.913 9 C 0.049 3.951 10 C -0.232 4.232 11 C -0.151 4.151 12 C -0.013 4.013 13 N -0.281 5.281 14 C -0.007 4.007 15 C -0.168 4.168 16 C -0.146 4.146 17 C -0.168 4.168 18 C 0.130 3.870 19 N -0.392 5.392 20 C -0.171 4.171 21 C -0.172 4.172 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.125 0.875 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.168 0.832 34 H 0.137 0.863 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.897 -11.612 7.536 14.381 hybrid contribution 0.613 0.070 -0.211 0.652 sum -3.283 -11.543 7.324 14.059 Atomic orbital electron populations 1.69908 1.08857 1.30150 1.37397 1.26670 0.95477 1.04226 0.91500 0.85233 0.79189 0.76301 0.79166 1.19081 1.18882 1.18411 1.19644 0.97959 0.92650 1.43157 0.91295 1.17889 0.93219 0.92791 0.91215 1.20741 1.03704 0.93046 1.05745 1.20227 0.96670 0.97401 1.00796 1.17342 0.95569 0.85425 1.03002 1.43677 1.37408 1.02243 1.44724 1.21899 0.87685 1.01519 0.89558 1.21937 1.03690 0.93944 0.97270 1.21471 0.96772 0.97876 0.98506 1.21907 1.01371 0.95268 0.98293 1.22186 0.88449 0.86888 0.89491 1.69075 1.23314 1.33338 1.13428 1.20357 1.01308 0.91041 1.04394 1.20845 0.99209 0.96725 1.00431 0.90426 0.89058 0.87502 0.89705 0.92081 0.91546 0.87749 0.88438 0.91430 0.88454 0.89123 0.83197 0.86257 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.70 10.98 21.82 0.24 -45.46 16 2 C 0.03 1.81 5.13 85.23 0.44 2.25 16 3 Si 0.98 40.02 29.59 68.60 2.03 42.05 16 4 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.50 -28.80 9.03 23.38 0.21 -28.59 16 8 H 0.07 3.83 7.90 -2.91 -0.02 3.81 16 9 C 0.05 2.97 5.57 -21.27 -0.12 2.85 16 10 C -0.21 -11.47 9.74 22.48 0.22 -11.25 16 11 C -0.13 -6.41 8.92 22.14 0.20 -6.21 16 12 C 0.08 3.73 6.52 38.62 0.25 3.99 16 13 N -0.57 -20.43 3.03 -501.07 -1.52 -21.95 16 14 C 0.12 3.11 6.27 86.32 0.54 3.65 16 15 C -0.13 -2.39 6.04 30.68 0.19 -2.21 16 16 C -0.11 -1.72 5.95 30.59 0.18 -1.54 16 17 C -0.13 -2.61 6.15 30.03 0.18 -2.43 16 18 C 0.41 13.20 6.19 137.64 0.85 14.05 16 19 N -0.77 -27.29 12.02 -48.55 -0.58 -27.87 16 20 C -0.15 -7.12 9.20 22.14 0.20 -6.92 16 21 C -0.15 -8.30 8.63 22.48 0.19 -8.10 16 22 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 23 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 24 H 0.11 5.03 6.04 -2.91 -0.02 5.01 16 25 H 0.08 2.34 5.67 -2.39 -0.01 2.33 16 26 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.60 8.00 -2.39 -0.02 1.58 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.35 10.19 8.70 -92.71 -0.81 9.38 16 34 H 0.12 4.87 5.98 -2.91 -0.02 4.86 16 35 H 0.11 5.96 6.20 -2.91 -0.02 5.94 16 Total: -1.00 -67.66 284.00 4.01 -63.65 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.30 Total: 30.04 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 3.54 Total: -40.45 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -1.86 Total: -95.29 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -67.66 4.01 -63.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.817 kcal (2) G-P(sol) polarization free energy of solvation -67.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds