Wall clock time and date at job start Mon Mar 30 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.36831 * 125.06217 * 264.69588 * 11 10 9 13 13 C 1.34237 * 109.93415 * 179.81485 * 12 11 10 14 14 C 1.46491 * 107.00148 * 0.43632 * 13 12 11 15 15 C 1.37692 * 125.05919 * 85.00008 * 11 10 9 16 16 C 1.39085 * 133.51788 * 0.02587 * 15 11 10 17 17 C 1.37788 * 119.78065 * 179.97438 * 16 15 11 18 18 C 1.38791 * 120.66557 * 359.97309 * 17 16 15 19 19 C 1.36668 * 120.52701 * 0.04424 * 18 17 16 20 20 C 1.50704 * 120.11625 * 179.97438 * 19 18 17 21 21 N 1.46892 * 109.46996 * 260.00296 * 20 19 18 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.07995 * 125.03325 * 359.97438 * 12 11 10 28 28 H 1.07997 * 126.49765 * 180.13613 * 13 12 11 29 29 H 1.08002 * 120.10989 * 359.93834 * 16 15 11 30 30 H 1.08001 * 119.66775 * 179.97438 * 17 16 15 31 31 H 1.07997 * 119.73589 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.46703 * 20.00291 * 20 19 18 33 33 H 1.09001 * 109.46379 * 140.00253 * 20 19 18 34 34 H 1.00903 * 111.00216 * 56.05090 * 21 20 19 35 35 H 1.00901 * 111.00358 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4867 -2.6364 0.0022 12 6 6.2727 -2.7408 -1.1129 13 6 7.5686 -2.7041 -0.7645 14 6 7.6165 -2.5753 0.6939 15 6 6.2777 -2.5372 1.1249 16 6 6.0023 -2.4178 2.4830 17 6 7.0390 -2.3383 3.3871 18 6 8.3579 -2.3767 2.9569 19 6 8.6513 -2.4934 1.6272 20 6 10.0868 -2.5336 1.1702 21 7 10.4802 -1.2080 0.6745 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.9050 -2.8359 -2.1239 28 1 8.4152 -2.7635 -1.4324 29 1 4.9792 -2.3868 2.8277 30 1 6.8230 -2.2451 4.4412 31 1 9.1589 -2.3137 3.6786 32 1 10.7267 -2.8132 2.0071 33 1 10.1930 -3.2668 0.3707 34 1 10.3296 -0.4998 1.3773 35 1 11.4394 -1.2090 0.3615 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070634782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:50 Heat of formation + Delta-G solvation = 31.185774 kcal Electronic energy + Delta-G solvation = -16902.548291 eV Core-core repulsion = 14285.532218 eV Total energy + Delta-G solvation = -2617.016073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.17767 -38.48934 -35.83107 -35.48113 -33.97366 -31.68939 -30.31328 -29.65993 -26.65521 -25.61571 -23.19130 -22.74722 -22.28760 -20.32332 -19.10478 -17.75799 -17.28167 -16.65566 -16.47693 -16.24018 -15.65021 -15.37604 -15.24821 -14.90874 -14.58937 -13.95252 -13.89479 -13.62124 -13.45927 -13.12530 -12.97334 -12.66138 -12.40060 -12.06557 -11.94678 -11.81331 -11.62588 -11.51817 -10.86390 -10.39934 -9.51284 -9.02231 -8.43797 -8.38446 -6.44169 0.23462 0.78397 1.27894 1.30735 1.42017 1.91119 2.06793 2.27073 2.96357 2.98077 3.74975 3.92116 3.93920 4.05922 4.14283 4.25601 4.33706 4.40936 4.50850 4.61507 4.71351 4.77155 4.86688 4.99927 5.10570 5.14897 5.21595 5.27593 5.47475 5.62580 5.72866 5.95193 6.03595 6.12400 6.30762 6.43780 6.50087 6.63262 6.69886 7.21563 8.77048 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029073 B = 0.005704 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.855459 B = 4907.875457 C = 4955.340625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.019 3.981 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.532 4.532 8 H 0.047 0.953 9 C -0.013 4.013 10 C 0.131 3.869 11 N -0.487 5.487 12 C 0.040 3.960 13 C -0.206 4.206 14 C -0.109 4.109 15 C 0.066 3.934 16 C -0.149 4.149 17 C -0.105 4.105 18 C -0.149 4.149 19 C -0.051 4.051 20 C 0.113 3.887 21 N -0.853 5.853 22 H 0.269 0.731 23 H 0.010 0.990 24 H 0.017 0.983 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.187 0.813 28 H 0.161 0.839 29 H 0.109 0.891 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.343 0.657 35 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.383 -4.687 3.074 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.065 0.935 9 C -0.051 4.051 10 C 0.010 3.990 11 N -0.168 5.168 12 C -0.085 4.085 13 C -0.230 4.230 14 C -0.114 4.114 15 C -0.040 4.040 16 C -0.170 4.170 17 C -0.124 4.124 18 C -0.168 4.168 19 C -0.052 4.052 20 C -0.017 4.017 21 N -0.384 5.384 22 H 0.079 0.921 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.114 0.886 26 H 0.093 0.907 27 H 0.204 0.796 28 H 0.179 0.821 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 20.314 -4.706 2.474 20.998 hybrid contribution -0.022 0.779 0.704 1.050 sum 20.292 -3.928 3.178 20.912 Atomic orbital electron populations 1.70016 1.07904 1.28347 1.51734 1.25787 0.95464 1.02836 0.93873 0.85792 0.79089 0.79295 0.79282 1.18960 1.20319 1.18692 1.21185 0.90707 0.93806 1.51387 0.93501 1.19737 0.94821 0.94048 0.96518 1.21662 0.75342 0.98418 1.03620 1.44440 1.06239 1.61009 1.05157 1.22355 0.90712 1.03358 0.92114 1.21765 0.95885 1.12595 0.92795 1.19300 0.91335 1.06371 0.94426 1.18713 0.91125 1.05002 0.89202 1.20322 1.00126 1.06427 0.90104 1.21026 0.91995 0.99854 0.99531 1.20796 0.96720 1.04204 0.95116 1.19246 0.94694 0.99045 0.92195 1.20563 0.90177 0.92003 0.98964 1.58569 1.29240 1.05446 1.45182 0.92147 0.97186 0.96432 0.88614 0.90663 0.79608 0.82144 0.87255 0.83707 0.83639 0.92968 0.90397 0.84384 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 2 C 0.02 1.10 5.47 84.65 0.46 1.56 16 3 Si 0.94 45.16 27.47 68.60 1.88 47.04 16 4 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 7 C -0.53 -30.14 9.66 25.60 0.25 -29.89 16 8 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 9 C -0.01 -0.62 4.37 29.85 0.13 -0.49 16 10 C 0.13 5.18 5.94 86.38 0.51 5.69 16 11 N -0.49 -17.86 2.78 -515.93 -1.43 -19.30 16 12 C 0.04 1.25 11.27 83.00 0.94 2.19 16 13 C -0.21 -6.15 10.94 23.51 0.26 -5.90 16 14 C -0.11 -3.54 6.16 -20.20 -0.12 -3.67 16 15 C 0.07 2.42 6.81 39.03 0.27 2.69 16 16 C -0.15 -5.08 10.00 22.37 0.22 -4.86 16 17 C -0.10 -2.86 10.01 22.30 0.22 -2.63 16 18 C -0.15 -3.61 9.60 22.03 0.21 -3.39 16 19 C -0.05 -1.35 5.39 -19.91 -0.11 -1.45 16 20 C 0.11 2.19 6.82 85.56 0.58 2.78 16 21 N -0.85 -15.62 9.61 -190.01 -1.83 -17.44 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 24 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 25 H 0.10 3.50 8.11 -2.39 -0.02 3.48 16 26 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.19 4.66 8.06 -2.91 -0.02 4.63 16 28 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.11 3.82 8.06 -2.91 -0.02 3.79 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.15 2.52 8.02 -2.91 -0.02 2.49 16 32 H 0.05 0.78 7.99 -2.39 -0.02 0.76 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.34 6.06 8.99 -89.69 -0.81 5.25 16 35 H 0.35 4.56 9.08 -89.69 -0.81 3.74 16 Total: -1.00 -67.89 298.77 2.17 -65.72 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.58 Total: 19.04 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 3.82 Total: -37.39 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -2.96 Total: -94.41 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -67.89 2.17 -65.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.907 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds