Wall clock time and date at job start Mon Mar 30 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39041 * 119.62145 * 2 1 4 4 C 1.37963 * 120.57268 * 180.02562 * 3 2 1 5 5 C 1.38711 * 119.76853 * 359.97261 * 4 3 2 6 6 C 1.41336 * 119.78007 * 0.14874 * 5 4 3 7 7 C 1.36362 * 119.61913 * 180.36647 * 2 1 3 8 8 N 1.33971 * 107.52731 * 180.28186 * 6 5 4 9 9 C 1.32460 * 109.78653 * 359.76750 * 8 6 5 10 10 C 1.40192 * 125.30750 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00310 * 179.97438 * 10 9 8 12 12 C 1.40349 * 119.99833 * 359.97144 * 10 9 8 13 13 N 1.30590 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99913 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47122 * 60.00472 * 14 12 10 16 16 H 1.48502 * 109.47027 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47327 * 300.00181 * 14 12 10 18 18 N 1.37855 * 109.39169 * 359.97438 * 9 8 6 19 19 C 1.46497 * 126.53699 * 179.97438 * 18 9 8 20 20 C 1.52997 * 109.47188 * 60.02853 * 19 18 9 21 21 C 1.52992 * 109.47081 * 300.02397 * 19 18 9 22 22 H 1.08996 * 109.47107 * 90.00061 * 1 2 3 23 23 H 1.09004 * 109.47177 * 209.99888 * 1 2 3 24 24 H 1.09002 * 109.46832 * 329.99901 * 1 2 3 25 25 H 1.08002 * 119.71530 * 359.97438 * 3 2 1 26 26 H 1.08010 * 120.11408 * 179.97438 * 4 3 2 27 27 H 1.08001 * 120.07416 * 359.52069 * 7 2 1 28 28 H 0.96999 * 120.00373 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.46725 * 180.02562 * 19 18 9 30 30 H 1.09002 * 109.47153 * 299.99573 * 20 19 18 31 31 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 32 32 H 1.09004 * 109.47261 * 59.99745 * 20 19 18 33 33 H 1.09001 * 109.47066 * 180.02562 * 21 19 18 34 34 H 1.08996 * 109.47747 * 300.00111 * 21 19 18 35 35 H 1.09002 * 109.47103 * 60.00523 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2087 0.0000 4 6 3.5736 1.2316 -0.0005 5 6 4.2822 0.0391 -0.0005 6 6 3.5863 -1.1910 -0.0031 7 6 2.1809 -1.1854 -0.0076 8 7 4.4994 -2.1712 0.0038 9 6 5.7171 -1.6497 0.0055 10 6 6.9123 -2.3824 0.0118 11 1 7.8615 -1.8672 0.0123 12 6 6.8753 -3.7854 0.0175 13 7 5.7276 -4.4083 0.0165 14 14 8.4679 -4.7616 0.0252 15 1 9.2529 -4.4186 1.2381 16 1 8.1582 -6.2139 0.0298 17 1 9.2585 -4.4285 -1.1868 18 7 5.6259 -0.2742 -0.0010 19 6 6.7426 0.6739 -0.0010 20 6 7.6025 0.4490 -1.2464 21 6 7.5938 0.4594 1.2520 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6434 2.1377 -0.0004 26 1 4.1000 2.1748 -0.0009 27 1 1.6359 -2.1178 -0.0057 28 1 5.7020 -5.3780 0.0208 29 1 6.3545 1.6924 -0.0066 30 1 7.9907 -0.5695 -1.2408 31 1 8.4332 1.1548 -1.2466 32 1 6.9961 0.6019 -2.1392 33 1 8.4245 1.1651 1.2522 34 1 6.9812 0.6196 2.1392 35 1 7.9820 -0.5591 1.2576 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071745007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:02 Heat of formation + Delta-G solvation = 35.382387 kcal Electronic energy + Delta-G solvation = -17573.278545 eV Core-core repulsion = 14956.444450 eV Total energy + Delta-G solvation = -2616.834095 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.20394 -38.44187 -36.31162 -35.36744 -32.86784 -31.32767 -30.27450 -28.52653 -28.08416 -26.34562 -23.48495 -23.00692 -21.80593 -20.48152 -18.74491 -17.84334 -17.29248 -16.26410 -15.81185 -15.73198 -15.31490 -14.82017 -14.46024 -14.42079 -14.29270 -13.78411 -13.46723 -13.23458 -13.05341 -12.86723 -12.76781 -12.56042 -12.39485 -12.32009 -11.99121 -11.87825 -11.79787 -11.44464 -10.97019 -10.73655 -9.77297 -8.89588 -8.55455 -8.46443 -6.49704 0.52854 0.99391 1.40974 1.47199 1.55056 2.16040 2.37198 2.42794 3.17792 3.64395 3.83183 3.92681 4.18701 4.19041 4.27861 4.41981 4.52806 4.72713 4.75496 4.77877 4.86098 4.90487 4.91137 4.96511 5.01931 5.10747 5.25498 5.30043 5.34631 5.43530 5.59053 5.75874 5.99583 6.04625 6.20960 6.28245 6.58120 6.83003 7.27888 8.12823 8.46098 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.008387 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.045352 B = 3337.876200 C = 4295.849968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.093 4.093 3 C -0.164 4.164 4 C -0.105 4.105 5 C -0.028 4.028 6 C 0.056 3.944 7 C -0.152 4.152 8 N -0.591 5.591 9 C 0.398 3.602 10 C -0.462 4.462 11 H 0.112 0.888 12 C 0.027 3.973 13 N -0.771 5.771 14 Si 0.995 3.005 15 H -0.252 1.252 16 H -0.274 1.274 17 H -0.252 1.252 18 N -0.535 5.535 19 C 0.143 3.857 20 C -0.159 4.159 21 C -0.159 4.159 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.148 0.852 26 H 0.126 0.874 27 H 0.097 0.903 28 H 0.281 0.719 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 8.919 -0.013 9.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.184 4.184 4 C -0.126 4.126 5 C -0.136 4.136 6 C -0.070 4.070 7 C -0.174 4.174 8 N -0.316 5.316 9 C 0.160 3.840 10 C -0.499 4.499 11 H 0.130 0.870 12 C -0.195 4.195 13 N -0.395 5.395 14 Si 0.814 3.186 15 H -0.176 1.176 16 H -0.199 1.199 17 H -0.176 1.176 18 N -0.231 5.231 19 C 0.040 3.960 20 C -0.216 4.216 21 C -0.217 4.217 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.165 0.835 26 H 0.144 0.856 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.947 7.974 -0.013 8.208 hybrid contribution 0.539 -0.097 -0.006 0.548 sum 2.486 7.876 -0.019 8.259 Atomic orbital electron populations 1.20679 0.89071 1.02970 1.02528 1.19519 0.97165 0.91853 1.00963 1.20727 0.92385 0.97627 1.07710 1.20017 0.94329 0.93802 1.04485 1.19337 0.85323 0.97105 1.11834 1.20086 0.95347 0.90418 1.01132 1.19858 0.90127 0.98004 1.09372 1.71240 0.97711 1.28312 1.34378 1.20717 0.94130 0.78179 0.91003 1.19078 0.90976 0.91440 1.48418 0.87021 1.27027 1.01384 0.98877 0.92210 1.70142 1.28779 1.10271 1.30278 0.85079 0.76465 0.76583 0.80515 1.17608 1.19882 1.17622 1.45896 1.03658 1.06739 1.66778 1.21208 0.85865 0.91667 0.97219 1.22179 0.99972 1.03792 0.95686 1.22180 1.00034 1.03797 0.95641 0.90823 0.92204 0.89845 0.83477 0.85602 0.88440 0.90870 0.88898 0.92062 0.88028 0.94121 0.88033 0.94128 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.69 9.98 71.23 0.71 -1.98 16 2 C -0.09 -3.59 5.84 -20.11 -0.12 -3.71 16 3 C -0.16 -5.94 9.68 22.40 0.22 -5.72 16 4 C -0.10 -4.23 9.88 22.32 0.22 -4.01 16 5 C -0.03 -1.39 6.88 39.05 0.27 -1.12 16 6 C 0.06 3.13 7.21 40.14 0.29 3.42 16 7 C -0.15 -7.40 9.69 22.39 0.22 -7.18 16 8 N -0.59 -36.54 9.33 -186.52 -1.74 -38.28 16 9 C 0.40 22.38 7.02 133.69 0.94 23.32 16 10 C -0.46 -23.99 7.45 23.26 0.17 -23.82 16 11 H 0.11 5.11 4.40 -2.91 -0.01 5.09 16 12 C 0.03 1.38 5.50 85.39 0.47 1.85 16 13 N -0.77 -43.45 11.85 21.89 0.26 -43.19 16 14 Si 0.99 37.17 29.56 68.60 2.03 39.19 16 15 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 16 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 18 N -0.53 -25.78 2.70 -490.59 -1.33 -27.11 16 19 C 0.14 5.14 3.44 44.99 0.15 5.30 16 20 C -0.16 -5.10 9.19 71.98 0.66 -4.44 16 21 C -0.16 -5.11 9.19 71.98 0.66 -4.45 16 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 1.64 8.07 -2.38 -0.02 1.62 16 24 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 25 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 26 H 0.13 4.21 7.74 -2.91 -0.02 4.19 16 27 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 28 H 0.28 14.39 8.29 -92.71 -0.77 13.62 16 29 H 0.09 2.94 7.61 -2.39 -0.02 2.92 16 30 H 0.06 2.22 5.53 -2.39 -0.01 2.21 16 31 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 2.22 5.53 -2.39 -0.01 2.21 16 Total: -1.00 -71.09 287.79 5.18 -65.92 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 1.09 Total: 26.01 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.86 Total: -22.54 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -2.81 Total: -108.58 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.19 kcal Total: -71.09 5.18 -65.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071745007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.297 kcal (2) G-P(sol) polarization free energy of solvation -71.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds