Wall clock time and date at job start Mon Mar 30 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 C 1.52997 * 109.46999 * 239.99393 * 2 1 3 5 5 C 1.50704 * 109.47202 * 119.99784 * 2 1 3 6 6 C 1.39023 * 126.70091 * 182.22441 * 5 2 1 7 7 C 1.39722 * 125.54070 * 0.02562 * 6 5 2 8 8 H 1.08004 * 119.99572 * 353.10301 * 7 6 5 9 9 C 1.40263 * 120.00169 * 173.10862 * 7 6 5 10 10 N 1.30710 * 120.00052 * 167.21332 * 9 7 6 11 11 Si 1.86805 * 120.00001 * 347.20608 * 9 7 6 12 12 H 1.48496 * 109.46838 * 84.91171 * 11 9 7 13 13 H 1.48501 * 109.46934 * 204.91269 * 11 9 7 14 14 H 1.48499 * 109.46923 * 324.91107 * 11 9 7 15 15 O 1.35136 * 108.92324 * 180.02562 * 6 5 2 16 16 C 1.35046 * 109.92279 * 0.02562 * 15 6 5 17 17 C 1.38735 * 132.78863 * 179.97438 * 16 15 6 18 18 C 1.38065 * 119.93034 * 180.02562 * 17 16 15 19 19 C 1.38857 * 120.73893 * 0.02562 * 18 17 16 20 20 C 1.36549 * 120.47382 * 0.02562 * 19 18 17 21 21 C 1.40274 * 119.73936 * 359.97251 * 20 19 18 22 22 H 1.09007 * 109.47027 * 300.00393 * 1 2 3 23 23 H 1.08997 * 109.46945 * 60.00269 * 1 2 3 24 24 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46820 * 185.70410 * 3 2 1 26 26 H 1.08996 * 109.46852 * 305.69889 * 3 2 1 27 27 H 1.08994 * 109.47537 * 65.70263 * 3 2 1 28 28 H 1.09000 * 109.47365 * 294.38591 * 4 2 1 29 29 H 1.08999 * 109.46929 * 54.39570 * 4 2 1 30 30 H 1.09006 * 109.47072 * 174.38630 * 4 2 1 31 31 H 0.97000 * 120.00224 * 180.02562 * 10 9 7 32 32 H 1.08000 * 120.03549 * 359.97438 * 17 16 15 33 33 H 1.08003 * 119.63574 * 180.27705 * 18 17 16 34 34 H 1.08003 * 119.76585 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.13077 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 3.3594 -0.8789 1.6090 7 6 4.4709 -0.4113 0.9033 8 1 4.3429 0.0334 -0.0727 9 6 5.7528 -0.5194 1.4621 10 7 6.8090 -0.3192 0.7185 11 14 5.9508 -0.9492 3.2692 12 1 5.9073 -2.4243 3.4347 13 1 7.2540 -0.4341 3.7607 14 1 4.8483 -0.3309 4.0487 15 8 3.3997 -1.5686 2.7704 16 6 2.1452 -1.8633 3.1743 17 6 1.6448 -2.5415 4.2763 18 6 0.2813 -2.6932 4.4311 19 6 -0.6016 -2.1738 3.4936 20 6 -0.1345 -1.5031 2.3997 21 6 1.2471 -1.3374 2.2226 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1253 1.4441 -0.1021 26 1 1.5958 1.9849 -0.8345 27 1 1.7625 1.9260 0.9366 28 1 1.7610 -1.7739 -1.2002 29 1 1.5969 -0.2688 -2.1363 30 1 3.1253 -0.6351 -1.3009 31 1 7.6956 -0.3944 1.1048 32 1 2.3212 -2.9511 5.0119 33 1 -0.1032 -3.2181 5.2932 34 1 -1.6652 -2.3020 3.6301 35 1 -0.8261 -1.1018 1.6737 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077068213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:25 Heat of formation + Delta-G solvation = -5.415307 kcal Electronic energy + Delta-G solvation = -17977.100393 eV Core-core repulsion = 15326.204427 eV Total energy + Delta-G solvation = -2650.895966 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16287 -36.83729 -36.30023 -33.85459 -30.75640 -29.72426 -29.37521 -26.42919 -26.34388 -25.50675 -21.68527 -21.07297 -20.73418 -18.37772 -17.95966 -15.89893 -15.47126 -15.15759 -14.88061 -14.09142 -13.71671 -13.50046 -13.24571 -12.78407 -12.74568 -12.57479 -11.82449 -11.63603 -11.48366 -11.34086 -11.10982 -10.98440 -10.84416 -10.61192 -10.52684 -10.16139 -10.08621 -9.68781 -9.63292 -9.29006 -8.77021 -7.70270 -7.30882 -7.17788 -4.67120 2.00227 2.41515 2.87536 2.98973 3.15471 3.54776 3.78038 4.37215 4.72009 4.90502 5.60183 5.70337 5.72680 5.75735 5.87227 5.98546 6.23475 6.24657 6.34235 6.38925 6.44416 6.52508 6.53856 6.56446 6.66678 6.77655 6.81781 6.91545 7.09974 7.16383 7.20761 7.24905 7.36150 7.55586 7.63635 7.81609 7.92389 8.07002 8.31538 8.69717 9.66453 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.012196 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.556930 B = 2295.357205 C = 3538.389077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.043 3.957 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.358 4.358 6 C 0.216 3.784 7 C -0.402 4.402 8 H 0.129 0.871 9 C 0.082 3.918 10 N -0.777 5.777 11 Si 0.917 3.083 12 H -0.259 1.259 13 H -0.284 1.284 14 H -0.245 1.245 15 O -0.223 6.223 16 C -0.026 4.026 17 C -0.088 4.088 18 C -0.182 4.182 19 C -0.121 4.121 20 C -0.157 4.157 21 C -0.023 4.023 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.295 0.705 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -0.276 1.368 6.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.043 3.957 3 C -0.196 4.196 4 C -0.195 4.195 5 C -0.361 4.361 6 C 0.167 3.833 7 C -0.428 4.428 8 H 0.146 0.854 9 C -0.142 4.142 10 N -0.400 5.400 11 Si 0.743 3.257 12 H -0.184 1.184 13 H -0.211 1.211 14 H -0.169 1.169 15 O -0.129 6.129 16 C -0.071 4.071 17 C -0.107 4.107 18 C -0.201 4.201 19 C -0.139 4.139 20 C -0.175 4.175 21 C -0.023 4.023 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.409 -0.318 1.418 5.600 hybrid contribution 0.231 -0.242 0.751 0.822 sum -5.178 -0.560 2.168 5.642 Atomic orbital electron populations 1.22055 0.96415 1.00803 1.00053 1.18205 0.92899 0.93173 0.91419 1.21931 1.02158 0.95852 0.99661 1.21925 1.01895 0.99620 0.96095 1.19249 0.90459 1.22731 1.03646 1.19499 0.94771 0.88119 0.80943 1.19020 0.87189 1.32157 1.04433 0.85381 1.26321 0.95296 0.90986 1.01631 1.69545 1.00144 1.31800 1.38493 0.85999 0.77836 0.81023 0.80813 1.18409 1.21066 1.16871 1.84027 1.27436 1.63776 1.37619 1.19497 0.82589 1.06121 0.98851 1.19659 0.94952 1.00688 0.95394 1.20328 0.91789 1.06960 1.01012 1.20431 0.98163 0.99942 0.95375 1.20594 0.93598 1.03984 0.99329 1.18555 0.93095 0.96471 0.94230 0.92898 0.94144 0.92762 0.91541 0.94579 0.93580 0.93600 0.94480 0.91839 0.89461 0.87466 0.87240 0.87736 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 6.66 37.16 0.25 -2.12 16 2 C 0.04 0.86 0.75 -155.66 -0.12 0.74 16 3 C -0.14 -2.64 8.21 37.16 0.31 -2.34 16 4 C -0.14 -2.63 8.28 37.16 0.31 -2.32 16 5 C -0.36 -8.33 4.87 -103.20 -0.50 -8.83 16 6 C 0.22 5.39 6.32 -38.74 -0.24 5.15 16 7 C -0.40 -10.01 8.34 -38.27 -0.32 -10.33 16 8 H 0.13 3.20 4.62 -52.48 -0.24 2.96 16 9 C 0.08 2.01 5.52 -17.27 -0.10 1.91 16 10 N -0.78 -18.87 13.92 55.57 0.77 -18.09 16 11 Si 0.92 20.40 25.80 -169.99 -4.39 16.01 16 12 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.24 -5.72 6.66 56.52 0.38 -5.34 16 15 O -0.22 -5.67 6.18 1.28 0.01 -5.66 16 16 C -0.03 -0.61 7.37 -38.34 -0.28 -0.90 16 17 C -0.09 -1.83 10.06 -39.46 -0.40 -2.22 16 18 C -0.18 -3.35 10.02 -39.42 -0.40 -3.75 16 19 C -0.12 -2.20 9.97 -39.96 -0.40 -2.60 16 20 C -0.16 -3.14 8.75 -39.43 -0.35 -3.49 16 21 C -0.02 -0.52 5.89 -106.95 -0.63 -1.15 16 22 H 0.05 0.92 7.01 -51.93 -0.36 0.56 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.94 6.57 -51.93 -0.34 0.60 16 25 H 0.07 1.35 5.77 -51.92 -0.30 1.05 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.29 5.93 -51.93 -0.31 0.98 16 31 H 0.29 6.45 8.29 -40.82 -0.34 6.11 16 32 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 34 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.12 2.16 4.71 -52.49 -0.25 1.91 16 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -25.87 275.58 -6.66 -32.53 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.34 Total: 3.30 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: -2.87 Total: -32.24 kcal Atomic # 7 Polarization: -18.87 SS G_CDS: 0.77 Total: -18.09 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: 0.01 Total: -5.66 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.39 Total: 16.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.87 -6.66 -32.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077068213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.113 kcal (2) G-P(sol) polarization free energy of solvation -25.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds