Wall clock time and date at job start Mon Mar 30 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47285 * 2 1 4 4 C 1.52997 * 109.46999 * 239.99393 * 2 1 3 5 5 C 1.50704 * 109.47202 * 119.99784 * 2 1 3 6 6 C 1.39023 * 126.70091 * 182.22441 * 5 2 1 7 7 C 1.39722 * 125.54070 * 0.02562 * 6 5 2 8 8 H 1.08004 * 119.99572 * 353.10301 * 7 6 5 9 9 C 1.40263 * 120.00169 * 173.10862 * 7 6 5 10 10 N 1.30710 * 120.00052 * 167.21332 * 9 7 6 11 11 Si 1.86805 * 120.00001 * 347.20608 * 9 7 6 12 12 H 1.48496 * 109.46838 * 84.91171 * 11 9 7 13 13 H 1.48501 * 109.46934 * 204.91269 * 11 9 7 14 14 H 1.48499 * 109.46923 * 324.91107 * 11 9 7 15 15 O 1.35136 * 108.92324 * 180.02562 * 6 5 2 16 16 C 1.35046 * 109.92279 * 0.02562 * 15 6 5 17 17 C 1.38735 * 132.78863 * 179.97438 * 16 15 6 18 18 C 1.38065 * 119.93034 * 180.02562 * 17 16 15 19 19 C 1.38857 * 120.73893 * 0.02562 * 18 17 16 20 20 C 1.36549 * 120.47382 * 0.02562 * 19 18 17 21 21 C 1.40274 * 119.73936 * 359.97251 * 20 19 18 22 22 H 1.09007 * 109.47027 * 300.00393 * 1 2 3 23 23 H 1.08997 * 109.46945 * 60.00269 * 1 2 3 24 24 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46820 * 185.70410 * 3 2 1 26 26 H 1.08996 * 109.46852 * 305.69889 * 3 2 1 27 27 H 1.08994 * 109.47537 * 65.70263 * 3 2 1 28 28 H 1.09000 * 109.47365 * 294.38591 * 4 2 1 29 29 H 1.08999 * 109.46929 * 54.39570 * 4 2 1 30 30 H 1.09006 * 109.47072 * 174.38630 * 4 2 1 31 31 H 0.97000 * 120.00224 * 180.02562 * 10 9 7 32 32 H 1.08000 * 120.03549 * 359.97438 * 17 16 15 33 33 H 1.08003 * 119.63574 * 180.27705 * 18 17 16 34 34 H 1.08003 * 119.76585 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.13077 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 3.3594 -0.8789 1.6090 7 6 4.4709 -0.4113 0.9033 8 1 4.3429 0.0334 -0.0727 9 6 5.7528 -0.5194 1.4621 10 7 6.8090 -0.3192 0.7185 11 14 5.9508 -0.9492 3.2692 12 1 5.9073 -2.4243 3.4347 13 1 7.2540 -0.4341 3.7607 14 1 4.8483 -0.3309 4.0487 15 8 3.3997 -1.5686 2.7704 16 6 2.1452 -1.8633 3.1743 17 6 1.6448 -2.5415 4.2763 18 6 0.2813 -2.6932 4.4311 19 6 -0.6016 -2.1738 3.4936 20 6 -0.1345 -1.5031 2.3997 21 6 1.2471 -1.3374 2.2226 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1253 1.4441 -0.1021 26 1 1.5958 1.9849 -0.8345 27 1 1.7625 1.9260 0.9366 28 1 1.7610 -1.7739 -1.2002 29 1 1.5969 -0.2688 -2.1363 30 1 3.1253 -0.6351 -1.3009 31 1 7.6956 -0.3944 1.1048 32 1 2.3212 -2.9511 5.0119 33 1 -0.1032 -3.2181 5.2932 34 1 -1.6652 -2.3020 3.6301 35 1 -0.8261 -1.1018 1.6737 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077068213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:25 Heat of formation + Delta-G solvation = -17.900904 kcal Electronic energy + Delta-G solvation = -17977.641809 eV Core-core repulsion = 15326.204427 eV Total energy + Delta-G solvation = -2651.437383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.90355 -38.46014 -37.87069 -35.64729 -32.40218 -31.44686 -30.99218 -27.90743 -27.87258 -27.19486 -23.34596 -22.72064 -22.41232 -20.08062 -19.65040 -17.60266 -17.21342 -16.74963 -16.68291 -15.64855 -15.35593 -15.18058 -14.73983 -14.45408 -14.35004 -14.19565 -13.45517 -13.30806 -13.02748 -12.96503 -12.68816 -12.57281 -12.38734 -12.25026 -12.11125 -11.75353 -11.68117 -11.48861 -11.23384 -10.87753 -10.43748 -9.35550 -9.11943 -8.90215 -6.47366 0.34935 0.78576 1.10564 1.19485 1.34424 1.76862 1.98898 2.63803 2.97260 3.19415 4.03897 4.19685 4.24072 4.31891 4.38830 4.47990 4.67074 4.76491 4.81028 4.88451 4.93101 4.96652 5.03169 5.05082 5.15540 5.21688 5.31073 5.31575 5.47965 5.60912 5.65136 5.71461 5.77339 5.89652 6.03104 6.10650 6.11715 6.36171 6.56813 6.89624 7.90900 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.012196 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.556930 B = 2295.357205 C = 3538.389077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.034 3.966 3 C -0.132 4.132 4 C -0.131 4.131 5 C -0.358 4.358 6 C 0.186 3.814 7 C -0.426 4.426 8 H 0.116 0.884 9 C 0.056 3.944 10 N -0.806 5.806 11 Si 0.960 3.040 12 H -0.269 1.269 13 H -0.259 1.259 14 H -0.268 1.268 15 O -0.241 6.241 16 C -0.067 4.067 17 C -0.106 4.106 18 C -0.160 4.160 19 C -0.119 4.119 20 C -0.154 4.154 21 C -0.053 4.053 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.303 0.697 32 H 0.121 0.879 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.922 -0.749 2.231 9.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.034 3.966 3 C -0.190 4.190 4 C -0.188 4.188 5 C -0.361 4.361 6 C 0.137 3.863 7 C -0.454 4.454 8 H 0.134 0.866 9 C -0.165 4.165 10 N -0.430 5.430 11 Si 0.786 3.214 12 H -0.194 1.194 13 H -0.185 1.185 14 H -0.193 1.193 15 O -0.147 6.147 16 C -0.111 4.111 17 C -0.125 4.125 18 C -0.178 4.178 19 C -0.137 4.137 20 C -0.171 4.171 21 C -0.054 4.054 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.139 0.861 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.402 -0.788 2.279 8.742 hybrid contribution 0.842 -0.200 0.601 1.053 sum -7.561 -0.987 2.880 8.151 Atomic orbital electron populations 1.21965 0.93985 1.01218 1.01362 1.18392 0.94892 0.93067 0.90236 1.21846 1.00893 0.95849 1.00370 1.21837 1.00564 0.99335 0.97112 1.19810 0.89995 1.21755 1.04537 1.19750 0.95726 0.89270 0.81539 1.18941 0.87914 1.34012 1.04519 0.86603 1.26704 0.95168 0.91162 1.03477 1.69539 1.00604 1.33544 1.39327 0.85409 0.77860 0.79891 0.78287 1.19430 1.18457 1.19320 1.83952 1.28798 1.64059 1.37893 1.20173 0.82369 1.07948 1.00659 1.20112 0.96633 1.00725 0.95029 1.20923 0.90598 1.04633 1.01667 1.20978 1.00507 0.98121 0.94050 1.20989 0.92476 1.03314 1.00366 1.18895 0.94582 0.97575 0.94316 0.92976 0.91434 0.92708 0.93798 0.91635 0.94444 0.94406 0.91512 0.94179 0.88532 0.86054 0.83078 0.83329 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 6.66 71.98 0.48 -3.62 16 2 C 0.03 1.34 0.75 -52.93 -0.04 1.30 16 3 C -0.13 -5.02 8.21 71.98 0.59 -4.43 16 4 C -0.13 -4.96 8.28 71.98 0.60 -4.37 16 5 C -0.36 -16.89 4.87 -18.94 -0.09 -16.98 16 6 C 0.19 9.69 6.32 22.82 0.14 9.83 16 7 C -0.43 -22.52 8.34 23.12 0.19 -22.33 16 8 H 0.12 6.22 4.62 -2.91 -0.01 6.21 16 9 C 0.06 2.87 5.52 85.35 0.47 3.34 16 10 N -0.81 -40.72 13.92 21.89 0.30 -40.41 16 11 Si 0.96 43.64 25.80 68.60 1.77 45.41 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 14 H -0.27 -13.01 6.66 99.48 0.66 -12.34 16 15 O -0.24 -12.69 6.18 -18.35 -0.11 -12.81 16 16 C -0.07 -3.21 7.37 23.07 0.17 -3.04 16 17 C -0.11 -4.22 10.06 22.35 0.22 -3.99 16 18 C -0.16 -5.17 10.02 22.38 0.22 -4.95 16 19 C -0.12 -3.74 9.97 22.02 0.22 -3.52 16 20 C -0.15 -5.67 8.75 22.37 0.20 -5.48 16 21 C -0.05 -2.39 5.89 -21.37 -0.13 -2.52 16 22 H 0.05 1.66 7.01 -2.38 -0.02 1.64 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.05 1.73 6.57 -2.39 -0.02 1.71 16 25 H 0.04 1.85 5.77 -2.38 -0.01 1.83 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.04 1.68 5.93 -2.38 -0.01 1.67 16 31 H 0.30 13.71 8.29 -92.71 -0.77 12.94 16 32 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 34 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.14 4.53 4.71 -2.91 -0.01 4.52 16 Total: -1.00 -58.10 275.58 6.27 -51.84 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.05 Total: 16.71 kcal Atomic # 6 Polarization: -63.99 SS G_CDS: 3.25 Total: -60.74 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.30 Total: -40.41 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.11 Total: -12.81 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.77 Total: 45.41 kcal Total: -58.10 6.27 -51.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077068213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.938 kcal (2) G-P(sol) polarization free energy of solvation -58.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds