Wall clock time and date at job start Mon Mar 30 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38119 * 120.03126 * 2 1 4 4 C 1.38802 * 120.73677 * 179.97438 * 3 2 1 5 5 C 1.36584 * 120.47429 * 0.04583 * 4 3 2 6 6 C 1.40230 * 119.74133 * 359.97438 * 5 4 3 7 7 C 1.38680 * 120.03507 * 179.72437 * 2 1 3 8 8 O 1.35041 * 132.79902 * 359.97438 * 7 2 1 9 9 C 1.35136 * 109.92714 * 180.02562 * 8 7 2 10 10 C 1.39718 * 125.53574 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00045 * 180.02562 * 10 9 8 12 12 C 1.40277 * 120.00194 * 0.02562 * 10 9 8 13 13 N 1.30707 * 119.99494 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00172 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46804 * 60.00544 * 14 12 10 16 16 H 1.48499 * 109.46734 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47281 * 300.00046 * 14 12 10 18 18 C 1.39029 * 108.93114 * 359.46775 * 9 8 7 19 19 C 1.50694 * 126.70205 * 179.91289 * 18 9 8 20 20 C 1.53005 * 109.46831 * 300.82622 * 19 18 9 21 21 C 1.53001 * 109.47204 * 60.81827 * 19 18 9 22 22 H 1.08999 * 109.47015 * 90.00199 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99351 * 1 2 3 24 24 H 1.09000 * 109.47248 * 330.00069 * 1 2 3 25 25 H 1.07999 * 119.63182 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.76388 * 180.02562 * 4 3 2 27 27 H 1.08003 * 120.12983 * 179.97438 * 5 4 3 28 28 H 0.97005 * 120.00100 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.47562 * 180.82777 * 19 18 9 30 30 H 1.08994 * 109.47578 * 59.99850 * 20 19 18 31 31 H 1.09003 * 109.47148 * 180.02562 * 20 19 18 32 32 H 1.09008 * 109.46633 * 299.99655 * 20 19 18 33 33 H 1.09003 * 109.46793 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.47179 * 300.00630 * 21 19 18 35 35 H 1.09003 * 109.46625 * 60.00541 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5862 1.2129 0.0005 5 6 4.2934 0.0443 0.0001 6 6 3.6118 -1.1812 -0.0003 7 6 2.2012 -1.2006 0.0058 8 8 1.8026 -2.4908 0.0124 9 6 2.8806 -3.3058 0.0167 10 6 2.8426 -4.7025 0.0234 11 1 3.7629 -5.2677 0.0268 12 6 1.6092 -5.3706 0.0257 13 7 0.4954 -4.6865 0.0210 14 14 1.5584 -7.2379 0.0339 15 1 2.2440 -7.7463 1.2491 16 1 0.1454 -7.6945 0.0345 17 1 2.2454 -7.7571 -1.1759 18 6 4.0335 -2.5290 0.0005 19 6 5.4555 -3.0276 0.0007 20 6 5.6980 -3.8767 1.2502 21 6 5.6982 -3.8774 -1.2482 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.6528 2.1279 -0.0004 26 1 4.1108 2.1569 0.0009 27 1 5.3732 0.0641 0.0001 28 1 -0.3576 -5.1485 0.0222 29 1 6.1385 -2.1781 0.0006 30 1 5.0151 -4.7262 1.2504 31 1 6.7267 -4.2370 1.2506 32 1 5.5251 -3.2712 2.1400 33 1 6.7267 -4.2384 -1.2478 34 1 5.0152 -4.7269 -1.2480 35 1 5.5254 -3.2725 -2.1384 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077068666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:50 Heat of formation + Delta-G solvation = -15.788665 kcal Electronic energy + Delta-G solvation = -17687.333531 eV Core-core repulsion = 15035.987742 eV Total energy + Delta-G solvation = -2651.345789 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76736 -36.77569 -35.12058 -33.73769 -31.92005 -29.49368 -28.86967 -26.22683 -25.89411 -25.43392 -21.49720 -21.22457 -20.63132 -18.04742 -17.58176 -15.64045 -15.40820 -15.01459 -14.49431 -14.24507 -13.54234 -13.15805 -13.00910 -12.63450 -12.31509 -12.21171 -12.14756 -11.53256 -11.53004 -11.42227 -11.30206 -11.08306 -10.80129 -10.77640 -10.35213 -10.30580 -10.16283 -9.65665 -9.59440 -9.37690 -8.45845 -7.42021 -7.11608 -6.91896 -4.59507 2.16960 2.63308 2.85919 2.89896 2.92480 3.67327 3.70473 4.53188 4.84473 5.03566 5.68057 5.74007 5.89028 5.96555 6.05233 6.16487 6.20908 6.28480 6.34639 6.40760 6.50277 6.52112 6.64379 6.69864 6.74126 6.74805 6.86091 6.98543 7.20485 7.24032 7.25842 7.35721 7.53767 7.68202 7.75830 7.84400 8.05470 8.36538 8.48180 9.02163 9.85080 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.009719 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.757392 B = 2880.164191 C = 4011.853296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.056 4.056 3 C -0.185 4.185 4 C -0.121 4.121 5 C -0.153 4.153 6 C -0.034 4.034 7 C -0.022 4.022 8 O -0.168 6.168 9 C 0.251 3.749 10 C -0.422 4.422 11 H 0.117 0.883 12 C 0.065 3.935 13 N -0.757 5.757 14 Si 0.922 3.078 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.259 1.259 18 C -0.381 4.381 19 C 0.019 3.981 20 C -0.144 4.144 21 C -0.143 4.143 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.290 0.710 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.063 0.937 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 0.944 0.005 2.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.057 4.057 3 C -0.203 4.203 4 C -0.139 4.139 5 C -0.172 4.172 6 C -0.035 4.035 7 C -0.069 4.069 8 O -0.068 6.068 9 C 0.200 3.800 10 C -0.450 4.450 11 H 0.134 0.866 12 C -0.159 4.159 13 N -0.380 5.380 14 Si 0.745 3.255 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.183 1.183 18 C -0.384 4.384 19 C 0.001 3.999 20 C -0.202 4.202 21 C -0.201 4.201 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.590 0.871 0.007 1.813 hybrid contribution -0.027 -0.619 -0.006 0.620 sum 1.563 0.252 0.001 1.583 Atomic orbital electron populations 1.20626 0.92249 1.01810 1.01416 1.18530 0.94691 0.89356 1.03106 1.20192 0.93798 0.95220 1.11134 1.20290 0.93909 0.96765 1.02919 1.19993 0.98080 0.91055 1.08022 1.18643 0.92768 0.93713 0.98419 1.19494 0.92747 0.85031 1.09610 1.84615 1.33092 1.12387 1.76753 1.19314 0.81893 0.90160 0.88642 1.19117 0.94462 0.87833 1.43561 0.86592 1.26304 0.95041 1.02405 0.92166 1.69724 0.99141 1.39101 1.30009 0.86102 0.78671 0.80249 0.80501 1.18287 1.19850 1.18291 1.19442 0.94038 0.90016 1.34881 1.18743 0.92216 0.95633 0.93344 1.21909 0.99277 1.00742 0.98227 1.21894 0.99249 1.00696 0.98235 0.92223 0.91582 0.92640 0.87457 0.87965 0.88062 0.89894 0.93342 0.91738 0.94710 0.93738 0.94716 0.91807 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 10.02 36.01 0.36 -1.62 16 2 C -0.06 -1.25 5.89 -104.50 -0.62 -1.87 16 3 C -0.18 -3.70 9.68 -39.42 -0.38 -4.09 16 4 C -0.12 -2.39 9.97 -39.97 -0.40 -2.79 16 5 C -0.15 -3.35 10.03 -39.43 -0.40 -3.74 16 6 C -0.03 -0.86 6.13 -106.94 -0.66 -1.51 16 7 C -0.02 -0.56 7.03 -38.34 -0.27 -0.83 16 8 O -0.17 -4.62 8.90 1.29 0.01 -4.61 16 9 C 0.25 6.59 6.64 -38.74 -0.26 6.33 16 10 C -0.42 -10.34 7.62 -38.26 -0.29 -10.63 16 11 H 0.12 2.62 4.51 -52.49 -0.24 2.39 16 12 C 0.06 1.52 5.50 -17.26 -0.09 1.43 16 13 N -0.76 -18.81 11.96 55.57 0.66 -18.15 16 14 Si 0.92 17.17 29.56 -169.99 -5.03 12.14 16 15 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 17 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 18 C -0.38 -9.36 4.99 -103.20 -0.52 -9.88 16 19 C 0.02 0.40 3.11 -91.77 -0.29 0.11 16 20 C -0.14 -2.75 9.02 37.16 0.34 -2.42 16 21 C -0.14 -2.74 9.04 37.16 0.34 -2.40 16 22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 24 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 25 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 27 H 0.10 2.02 7.94 -52.48 -0.42 1.60 16 28 H 0.29 6.48 8.29 -40.82 -0.34 6.14 16 29 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 30 H 0.06 1.28 5.64 -51.93 -0.29 0.98 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.26 5.76 -51.93 -0.30 0.96 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 289.53 15.07 4.36 4.36 Total: -1.00 -27.21 289.53 -7.71 -34.92 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.59 Total: 5.23 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: -3.13 Total: -33.90 kcal Atomic # 7 Polarization: -18.81 SS G_CDS: 0.66 Total: -18.15 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: 0.01 Total: -4.61 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.21 -7.71 -34.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077068666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.131 kcal (2) G-P(sol) polarization free energy of solvation -27.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds