Wall clock time and date at job start Mon Mar 30 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38119 * 120.03126 * 2 1 4 4 C 1.38802 * 120.73677 * 179.97438 * 3 2 1 5 5 C 1.36584 * 120.47429 * 0.04583 * 4 3 2 6 6 C 1.40230 * 119.74133 * 359.97438 * 5 4 3 7 7 C 1.38680 * 120.03507 * 179.72437 * 2 1 3 8 8 O 1.35041 * 132.79902 * 359.97438 * 7 2 1 9 9 C 1.35136 * 109.92714 * 180.02562 * 8 7 2 10 10 C 1.39718 * 125.53574 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00045 * 180.02562 * 10 9 8 12 12 C 1.40277 * 120.00194 * 0.02562 * 10 9 8 13 13 N 1.30707 * 119.99494 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00172 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46804 * 60.00544 * 14 12 10 16 16 H 1.48499 * 109.46734 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47281 * 300.00046 * 14 12 10 18 18 C 1.39029 * 108.93114 * 359.46775 * 9 8 7 19 19 C 1.50694 * 126.70205 * 179.91289 * 18 9 8 20 20 C 1.53005 * 109.46831 * 300.82622 * 19 18 9 21 21 C 1.53001 * 109.47204 * 60.81827 * 19 18 9 22 22 H 1.08999 * 109.47015 * 90.00199 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99351 * 1 2 3 24 24 H 1.09000 * 109.47248 * 330.00069 * 1 2 3 25 25 H 1.07999 * 119.63182 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.76388 * 180.02562 * 4 3 2 27 27 H 1.08003 * 120.12983 * 179.97438 * 5 4 3 28 28 H 0.97005 * 120.00100 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.47562 * 180.82777 * 19 18 9 30 30 H 1.08994 * 109.47578 * 59.99850 * 20 19 18 31 31 H 1.09003 * 109.47148 * 180.02562 * 20 19 18 32 32 H 1.09008 * 109.46633 * 299.99655 * 20 19 18 33 33 H 1.09003 * 109.46793 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.47179 * 300.00630 * 21 19 18 35 35 H 1.09003 * 109.46625 * 60.00541 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5862 1.2129 0.0005 5 6 4.2934 0.0443 0.0001 6 6 3.6118 -1.1812 -0.0003 7 6 2.2012 -1.2006 0.0058 8 8 1.8026 -2.4908 0.0124 9 6 2.8806 -3.3058 0.0167 10 6 2.8426 -4.7025 0.0234 11 1 3.7629 -5.2677 0.0268 12 6 1.6092 -5.3706 0.0257 13 7 0.4954 -4.6865 0.0210 14 14 1.5584 -7.2379 0.0339 15 1 2.2440 -7.7463 1.2491 16 1 0.1454 -7.6945 0.0345 17 1 2.2454 -7.7571 -1.1759 18 6 4.0335 -2.5290 0.0005 19 6 5.4555 -3.0276 0.0007 20 6 5.6980 -3.8767 1.2502 21 6 5.6982 -3.8774 -1.2482 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.6528 2.1279 -0.0004 26 1 4.1108 2.1569 0.0009 27 1 5.3732 0.0641 0.0001 28 1 -0.3576 -5.1485 0.0222 29 1 6.1385 -2.1781 0.0006 30 1 5.0151 -4.7262 1.2504 31 1 6.7267 -4.2370 1.2506 32 1 5.5251 -3.2712 2.1400 33 1 6.7267 -4.2384 -1.2478 34 1 5.0152 -4.7269 -1.2480 35 1 5.5254 -3.2725 -2.1384 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077068666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:50 Heat of formation + Delta-G solvation = -28.687693 kcal Electronic energy + Delta-G solvation = -17687.892875 eV Core-core repulsion = 15035.987742 eV Total energy + Delta-G solvation = -2651.905133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.57441 -38.47557 -36.80409 -35.49552 -33.55472 -31.20757 -30.67372 -27.75623 -27.51525 -27.19524 -23.22842 -22.95307 -22.30828 -19.83498 -19.31158 -17.39168 -17.09144 -16.68947 -16.37347 -15.85918 -15.11967 -14.79930 -14.60268 -14.19951 -13.96066 -13.81184 -13.77303 -13.21876 -13.07509 -13.01730 -12.79873 -12.69908 -12.45626 -12.34199 -11.95126 -11.88703 -11.79180 -11.33373 -11.23759 -11.06152 -10.19780 -9.19899 -8.85340 -8.69415 -6.41691 0.44734 0.90861 1.34818 1.35760 1.50363 1.97699 2.11734 2.76240 3.08867 3.25013 4.03975 4.21621 4.28266 4.39784 4.50979 4.60432 4.62959 4.71523 4.77947 4.87718 4.91228 4.96697 4.99415 5.05243 5.10243 5.18843 5.24891 5.34449 5.53805 5.60299 5.65663 5.71927 5.85256 5.93049 6.05444 6.11620 6.32170 6.58800 6.68703 7.17163 8.14558 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.009719 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.757392 B = 2880.164191 C = 4011.853296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.075 4.075 3 C -0.174 4.174 4 C -0.114 4.114 5 C -0.162 4.162 6 C -0.068 4.068 7 C -0.070 4.070 8 O -0.196 6.196 9 C 0.212 3.788 10 C -0.443 4.443 11 H 0.128 0.872 12 C 0.021 3.979 13 N -0.801 5.801 14 Si 0.996 3.004 15 H -0.250 1.250 16 H -0.268 1.268 17 H -0.250 1.250 18 C -0.393 4.393 19 C 0.016 3.984 20 C -0.137 4.137 21 C -0.136 4.136 22 H 0.068 0.932 23 H 0.040 0.960 24 H 0.091 0.909 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.118 0.882 28 H 0.296 0.704 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 1.691 -0.011 3.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.075 4.075 3 C -0.193 4.193 4 C -0.132 4.132 5 C -0.180 4.180 6 C -0.069 4.069 7 C -0.116 4.116 8 O -0.098 6.098 9 C 0.162 3.838 10 C -0.471 4.471 11 H 0.146 0.854 12 C -0.199 4.199 13 N -0.425 5.425 14 Si 0.815 3.185 15 H -0.173 1.173 16 H -0.192 1.192 17 H -0.174 1.174 18 C -0.395 4.395 19 C -0.003 4.003 20 C -0.194 4.194 21 C -0.193 4.193 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.166 0.834 26 H 0.164 0.836 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.697 1.639 -0.009 3.157 hybrid contribution -0.343 -0.602 -0.002 0.693 sum 2.355 1.037 -0.011 2.573 Atomic orbital electron populations 1.20613 0.90447 1.02299 1.02105 1.19114 0.96464 0.89155 1.02815 1.20735 0.94321 0.95764 1.08433 1.20807 0.94121 0.97759 1.00539 1.20336 0.99174 0.90791 1.07748 1.19087 0.93025 0.95011 0.99728 1.20176 0.94058 0.85331 1.12051 1.84533 1.34290 1.13556 1.77436 1.19897 0.82404 0.91186 0.90351 1.19482 0.95625 0.87676 1.44276 0.85423 1.27322 0.94107 1.07496 0.90953 1.69825 0.99978 1.41329 1.31414 0.85013 0.78988 0.73604 0.80944 1.17345 1.19189 1.17360 1.19965 0.95376 0.90117 1.34091 1.18862 0.90202 0.96327 0.94863 1.21820 1.00953 0.99771 0.96871 1.21805 1.00922 0.99722 0.96882 0.91372 0.94092 0.89033 0.83404 0.83646 0.86373 0.89353 0.92789 0.92956 0.91359 0.94845 0.91364 0.93041 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.69 10.02 71.24 0.71 -2.97 16 2 C -0.07 -3.32 5.89 -19.78 -0.12 -3.43 16 3 C -0.17 -6.49 9.68 22.38 0.22 -6.27 16 4 C -0.11 -4.18 9.97 22.02 0.22 -3.96 16 5 C -0.16 -6.91 10.03 22.37 0.22 -6.69 16 6 C -0.07 -3.43 6.13 -21.37 -0.13 -3.56 16 7 C -0.07 -3.71 7.03 23.07 0.16 -3.54 16 8 O -0.20 -11.49 8.90 -18.29 -0.16 -11.65 16 9 C 0.21 11.72 6.64 22.82 0.15 11.87 16 10 C -0.44 -22.60 7.62 23.12 0.18 -22.42 16 11 H 0.13 5.93 4.51 -2.91 -0.01 5.92 16 12 C 0.02 1.00 5.50 85.36 0.47 1.47 16 13 N -0.80 -41.79 11.96 21.89 0.26 -41.53 16 14 Si 1.00 35.49 29.56 68.60 2.03 37.52 16 15 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 16 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 17 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 18 C -0.39 -19.93 4.99 -18.94 -0.09 -20.02 16 19 C 0.02 0.66 3.11 -11.54 -0.04 0.63 16 20 C -0.14 -5.14 9.02 71.98 0.65 -4.49 16 21 C -0.14 -5.11 9.04 71.98 0.65 -4.46 16 22 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.04 1.71 8.09 -2.39 -0.02 1.69 16 24 H 0.09 2.71 8.09 -2.39 -0.02 2.69 16 25 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 26 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.12 4.50 7.94 -2.91 -0.02 4.48 16 28 H 0.30 13.82 8.29 -92.70 -0.77 13.05 16 29 H 0.05 2.13 7.97 -2.39 -0.02 2.11 16 30 H 0.05 2.07 5.64 -2.39 -0.01 2.06 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 2.04 5.76 -2.39 -0.01 2.02 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -62.62 289.53 6.47 -56.15 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 1.09 Total: 27.37 kcal Atomic # 6 Polarization: -71.11 SS G_CDS: 3.26 Total: -67.86 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.26 Total: -41.53 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.16 Total: -11.65 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Total: -62.62 6.47 -56.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077068666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.462 kcal (2) G-P(sol) polarization free energy of solvation -62.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds