Wall clock time and date at job start Mon Mar 30 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46890 * 2 1 4 4 C 1.39020 * 126.70039 * 90.02529 * 3 2 1 5 5 C 1.39718 * 125.53661 * 359.97105 * 4 3 2 6 6 H 1.07998 * 119.99582 * 6.46206 * 5 4 3 7 7 C 1.40267 * 120.00161 * 186.45565 * 5 4 3 8 8 N 1.30717 * 119.99705 * 182.76740 * 7 5 4 9 9 Si 1.86800 * 120.00091 * 2.49291 * 7 5 4 10 10 H 1.48497 * 109.46992 * 180.27667 * 9 7 5 11 11 H 1.48493 * 109.46830 * 300.27093 * 9 7 5 12 12 H 1.48496 * 109.47169 * 60.27540 * 9 7 5 13 13 O 1.35143 * 108.93002 * 180.23922 * 4 3 2 14 14 C 1.35039 * 109.92523 * 359.59637 * 13 4 3 15 15 C 1.41074 * 107.95461 * 0.39696 * 14 13 4 16 16 C 1.40227 * 119.86704 * 179.76211 * 15 14 13 17 17 C 1.36585 * 119.74215 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.47371 * 359.95571 * 17 16 15 19 19 C 1.50694 * 119.63240 * 180.02562 * 18 17 16 20 20 C 1.38111 * 120.73351 * 0.04507 * 18 17 16 21 21 C 1.50703 * 120.03219 * 179.97438 * 20 18 17 22 22 H 1.09003 * 109.47051 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47533 * 300.00359 * 1 2 3 24 24 H 1.09006 * 109.46356 * 60.00419 * 1 2 3 25 25 H 1.09000 * 109.47326 * 239.99809 * 2 1 3 26 26 H 1.08997 * 109.47129 * 119.99665 * 2 1 3 27 27 H 0.96999 * 120.00293 * 354.47529 * 8 7 5 28 28 H 1.08003 * 120.12982 * 180.02562 * 16 15 14 29 29 H 1.07998 * 119.76086 * 179.97438 * 17 16 15 30 30 H 1.08997 * 109.47443 * 270.02307 * 19 18 17 31 31 H 1.09001 * 109.47159 * 30.02198 * 19 18 17 32 32 H 1.09002 * 109.47280 * 150.02484 * 19 18 17 33 33 H 1.09000 * 109.47210 * 269.97367 * 21 20 18 34 34 H 1.08997 * 109.47351 * 29.97786 * 21 20 18 35 35 H 1.09001 * 109.46987 * 149.98182 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3097 2.2040 1.1146 5 6 2.1676 1.8021 2.4452 6 1 1.9166 0.7773 2.6758 7 6 2.3512 2.7295 3.4814 8 7 2.2716 2.3418 4.7272 9 14 2.7168 4.5171 3.0811 10 1 2.8736 5.2847 4.3425 11 1 3.9717 4.6008 2.2915 12 1 1.5959 5.0867 2.2910 13 8 2.7334 3.4192 0.7022 14 6 2.7549 3.4655 -0.6473 15 6 2.3132 2.2166 -1.1323 16 6 2.2335 1.9927 -2.5143 17 6 2.5849 2.9863 -3.3831 18 6 3.0194 4.2160 -2.9077 19 6 3.4019 5.2991 -3.8831 20 6 3.1054 4.4578 -1.5506 21 6 3.5798 5.7984 -1.0518 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0071 1.4322 4.9361 28 1 1.8955 1.0383 -2.8903 29 1 2.5241 2.8141 -4.4475 30 1 4.4630 5.2177 -4.1188 31 1 2.8174 5.1885 -4.7965 32 1 3.2021 6.2746 -3.4397 33 1 4.6629 5.7789 -0.9315 34 1 3.3080 6.5707 -1.7713 35 1 3.1115 6.0153 -0.0917 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077070146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:50 Heat of formation + Delta-G solvation = -24.078758 kcal Electronic energy + Delta-G solvation = -17611.667507 eV Core-core repulsion = 14959.962233 eV Total energy + Delta-G solvation = -2651.705274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16392 -37.52118 -34.36774 -33.84567 -32.02644 -30.69346 -29.20012 -27.70685 -25.86183 -24.09398 -22.47240 -21.53471 -20.17890 -18.43252 -18.21686 -16.36340 -15.53895 -15.05782 -14.57901 -14.11666 -13.61664 -13.46900 -13.28591 -12.98857 -12.72832 -12.58885 -12.35639 -11.90866 -11.64239 -11.50924 -11.36359 -11.22728 -10.82699 -10.69764 -10.59583 -10.29356 -10.02791 -9.78880 -9.71431 -9.51461 -8.56171 -7.70606 -7.61665 -7.11827 -4.73126 1.95168 2.37206 3.03981 3.07197 3.35383 3.61945 3.87216 4.36996 4.61958 4.88356 5.46835 5.49180 5.59305 5.79417 5.86073 5.90190 5.91980 6.00410 6.11861 6.16289 6.24519 6.31881 6.35176 6.42939 6.53977 6.54873 6.69762 6.98853 7.01868 7.04427 7.06966 7.16635 7.35424 7.47395 7.54708 7.59606 7.89153 8.14233 8.20337 8.64360 9.66807 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.010484 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.969945 B = 2670.016364 C = 3895.325512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.008 4.008 3 C -0.377 4.377 4 C 0.217 3.783 5 C -0.464 4.464 6 H 0.108 0.892 7 C 0.042 3.958 8 N -0.789 5.789 9 Si 1.068 2.932 10 H -0.280 1.280 11 H -0.259 1.259 12 H -0.267 1.267 13 O -0.218 6.218 14 C -0.018 4.018 15 C -0.027 4.027 16 C -0.147 4.147 17 C -0.111 4.111 18 C -0.152 4.152 19 C -0.096 4.096 20 C -0.053 4.053 21 C -0.112 4.112 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.291 0.709 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 2.966 -8.280 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 C -0.379 4.379 4 C 0.168 3.832 5 C -0.492 4.492 6 H 0.125 0.875 7 C -0.181 4.181 8 N -0.411 5.411 9 Si 0.894 3.106 10 H -0.207 1.207 11 H -0.185 1.185 12 H -0.193 1.193 13 O -0.124 6.124 14 C -0.063 4.063 15 C -0.027 4.027 16 C -0.165 4.165 17 C -0.129 4.129 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.053 4.053 21 C -0.169 4.169 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.902 4.557 -7.337 8.684 hybrid contribution -0.489 -1.903 -0.629 2.063 sum 0.412 2.654 -7.967 8.407 Atomic orbital electron populations 1.21763 0.97488 0.99147 1.01469 1.19212 0.93634 0.92244 0.99475 1.19409 1.29353 0.99238 0.89894 1.19570 0.89383 0.79949 0.94284 1.20084 1.41776 0.99629 0.87675 0.87467 1.27503 0.90794 1.07813 0.92002 1.70531 1.28383 1.22465 1.19712 0.83428 0.80114 0.71636 0.75444 1.20720 1.18451 1.19296 1.83995 1.73802 1.34701 1.19864 1.19256 1.08961 0.96612 0.81490 1.18563 0.97378 0.93289 0.93513 1.20020 1.06309 0.98950 0.91246 1.20238 1.01407 0.93174 0.98096 1.18944 1.08302 0.96194 0.91782 1.20591 1.00442 0.96903 0.97277 1.18324 1.02443 0.93768 0.90795 1.20768 1.00893 0.94181 1.01049 0.94534 0.92974 0.93659 0.93868 0.93176 0.89697 0.87636 0.87591 0.92589 0.92689 0.92138 0.91773 0.91544 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.89 37.16 0.37 -2.30 16 2 C -0.01 -0.17 6.21 -27.88 -0.17 -0.34 16 3 C -0.38 -9.15 5.55 -103.20 -0.57 -9.72 16 4 C 0.22 5.62 6.48 -38.74 -0.25 5.37 16 5 C -0.46 -11.97 9.49 -38.27 -0.36 -12.34 16 6 H 0.11 2.76 7.36 -52.49 -0.39 2.37 16 7 C 0.04 1.06 5.52 -17.26 -0.10 0.97 16 8 N -0.79 -19.94 13.65 55.57 0.76 -19.18 16 9 Si 1.07 24.12 25.88 -169.99 -4.40 19.72 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.26 -5.82 6.82 56.52 0.39 -5.43 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 O -0.22 -5.57 5.97 1.28 0.01 -5.57 16 14 C -0.02 -0.44 7.03 -38.34 -0.27 -0.71 16 15 C -0.03 -0.63 6.13 -106.94 -0.66 -1.28 16 16 C -0.15 -3.02 10.08 -39.43 -0.40 -3.42 16 17 C -0.11 -2.04 9.61 -39.96 -0.38 -2.43 16 18 C -0.15 -2.79 5.89 -104.46 -0.62 -3.40 16 19 C -0.10 -1.33 9.58 36.00 0.34 -0.98 16 20 C -0.05 -1.08 5.89 -104.50 -0.62 -1.70 16 21 C -0.11 -1.93 9.60 36.01 0.35 -1.59 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 1.05 7.43 -51.93 -0.39 0.66 16 27 H 0.29 7.02 8.73 -40.82 -0.36 6.67 16 28 H 0.11 1.97 8.06 -52.48 -0.42 1.55 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.06 0.77 5.91 -51.93 -0.31 0.47 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.94 5.91 -51.93 -0.31 0.64 16 35 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -26.86 289.97 -7.37 -34.24 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.78 Total: 0.30 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -3.34 Total: -33.88 kcal Atomic # 7 Polarization: -19.94 SS G_CDS: 0.76 Total: -19.18 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: 0.01 Total: -5.57 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -4.40 Total: 19.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.86 -7.37 -34.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077070146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.159 kcal (2) G-P(sol) polarization free energy of solvation -26.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds