Wall clock time and date at job start Mon Mar 30 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46890 * 2 1 4 4 C 1.39020 * 126.70039 * 90.02529 * 3 2 1 5 5 C 1.39718 * 125.53661 * 359.97105 * 4 3 2 6 6 H 1.07998 * 119.99582 * 6.46206 * 5 4 3 7 7 C 1.40267 * 120.00161 * 186.45565 * 5 4 3 8 8 N 1.30717 * 119.99705 * 182.76740 * 7 5 4 9 9 Si 1.86800 * 120.00091 * 2.49291 * 7 5 4 10 10 H 1.48497 * 109.46992 * 180.27667 * 9 7 5 11 11 H 1.48493 * 109.46830 * 300.27093 * 9 7 5 12 12 H 1.48496 * 109.47169 * 60.27540 * 9 7 5 13 13 O 1.35143 * 108.93002 * 180.23922 * 4 3 2 14 14 C 1.35039 * 109.92523 * 359.59637 * 13 4 3 15 15 C 1.41074 * 107.95461 * 0.39696 * 14 13 4 16 16 C 1.40227 * 119.86704 * 179.76211 * 15 14 13 17 17 C 1.36585 * 119.74215 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.47371 * 359.95571 * 17 16 15 19 19 C 1.50694 * 119.63240 * 180.02562 * 18 17 16 20 20 C 1.38111 * 120.73351 * 0.04507 * 18 17 16 21 21 C 1.50703 * 120.03219 * 179.97438 * 20 18 17 22 22 H 1.09003 * 109.47051 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47533 * 300.00359 * 1 2 3 24 24 H 1.09006 * 109.46356 * 60.00419 * 1 2 3 25 25 H 1.09000 * 109.47326 * 239.99809 * 2 1 3 26 26 H 1.08997 * 109.47129 * 119.99665 * 2 1 3 27 27 H 0.96999 * 120.00293 * 354.47529 * 8 7 5 28 28 H 1.08003 * 120.12982 * 180.02562 * 16 15 14 29 29 H 1.07998 * 119.76086 * 179.97438 * 17 16 15 30 30 H 1.08997 * 109.47443 * 270.02307 * 19 18 17 31 31 H 1.09001 * 109.47159 * 30.02198 * 19 18 17 32 32 H 1.09002 * 109.47280 * 150.02484 * 19 18 17 33 33 H 1.09000 * 109.47210 * 269.97367 * 21 20 18 34 34 H 1.08997 * 109.47351 * 29.97786 * 21 20 18 35 35 H 1.09001 * 109.46987 * 149.98182 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3097 2.2040 1.1146 5 6 2.1676 1.8021 2.4452 6 1 1.9166 0.7773 2.6758 7 6 2.3512 2.7295 3.4814 8 7 2.2716 2.3418 4.7272 9 14 2.7168 4.5171 3.0811 10 1 2.8736 5.2847 4.3425 11 1 3.9717 4.6008 2.2915 12 1 1.5959 5.0867 2.2910 13 8 2.7334 3.4192 0.7022 14 6 2.7549 3.4655 -0.6473 15 6 2.3132 2.2166 -1.1323 16 6 2.2335 1.9927 -2.5143 17 6 2.5849 2.9863 -3.3831 18 6 3.0194 4.2160 -2.9077 19 6 3.4019 5.2991 -3.8831 20 6 3.1054 4.4578 -1.5506 21 6 3.5798 5.7984 -1.0518 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0071 1.4322 4.9361 28 1 1.8955 1.0383 -2.8903 29 1 2.5241 2.8141 -4.4475 30 1 4.4630 5.2177 -4.1188 31 1 2.8174 5.1885 -4.7965 32 1 3.2021 6.2746 -3.4397 33 1 4.6629 5.7789 -0.9315 34 1 3.3080 6.5707 -1.7713 35 1 3.1115 6.0153 -0.0917 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077070146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:50 Heat of formation + Delta-G solvation = -37.052479 kcal Electronic energy + Delta-G solvation = -17612.230090 eV Core-core repulsion = 14959.962233 eV Total energy + Delta-G solvation = -2652.267857 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.93929 -39.09922 -36.16106 -35.60502 -33.56015 -32.21449 -30.95791 -29.22700 -27.38766 -25.66961 -24.16419 -23.17327 -21.90334 -20.21695 -19.93970 -18.04695 -17.25865 -16.86442 -16.13513 -15.85981 -15.24404 -15.03873 -14.72941 -14.60021 -14.41184 -14.18761 -13.56473 -13.39103 -13.19394 -13.10134 -13.02223 -12.64954 -12.29998 -12.26412 -12.16417 -12.07611 -11.70114 -11.54206 -11.49726 -11.21687 -10.26486 -9.60303 -9.30732 -8.84350 -6.61339 0.29241 0.73026 1.23441 1.25654 1.54449 1.79738 2.05192 2.60725 2.87975 3.07190 3.95495 4.11392 4.20964 4.25214 4.39419 4.46742 4.54967 4.60842 4.70419 4.71489 4.85418 4.92133 4.96777 4.98663 5.04879 5.13159 5.15680 5.22381 5.34453 5.40967 5.45747 5.50904 5.63101 5.85203 5.85950 5.90283 6.13536 6.33908 6.41115 6.79633 7.76123 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.010484 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.969945 B = 2670.016364 C = 3895.325512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.010 4.010 3 C -0.382 4.382 4 C 0.186 3.814 5 C -0.494 4.494 6 H 0.092 0.908 7 C 0.017 3.983 8 N -0.811 5.811 9 Si 1.098 2.902 10 H -0.262 1.262 11 H -0.263 1.263 12 H -0.273 1.273 13 O -0.230 6.230 14 C -0.054 4.054 15 C -0.063 4.063 16 C -0.146 4.146 17 C -0.110 4.110 18 C -0.132 4.132 19 C -0.096 4.096 20 C -0.074 4.074 21 C -0.112 4.112 22 H 0.068 0.932 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.289 0.711 28 H 0.123 0.877 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 4.288 -11.983 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.047 4.047 3 C -0.385 4.385 4 C 0.137 3.863 5 C -0.522 4.522 6 H 0.110 0.890 7 C -0.202 4.202 8 N -0.434 5.434 9 Si 0.921 3.079 10 H -0.188 1.188 11 H -0.189 1.189 12 H -0.199 1.199 13 O -0.135 6.135 14 C -0.099 4.099 15 C -0.064 4.064 16 C -0.164 4.164 17 C -0.128 4.128 18 C -0.133 4.133 19 C -0.152 4.152 20 C -0.074 4.074 21 C -0.168 4.168 22 H 0.087 0.913 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.141 0.859 29 H 0.166 0.834 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.219 5.873 -11.034 12.559 hybrid contribution -0.556 -2.291 0.092 2.359 sum 0.663 3.582 -10.942 11.532 Atomic orbital electron populations 1.21649 0.95804 1.00929 1.00489 1.19295 0.95073 0.90664 0.99705 1.19945 1.28142 1.00412 0.90011 1.19762 0.90962 0.80816 0.94750 1.19957 1.44524 0.99288 0.88443 0.88970 1.28187 0.90487 1.09648 0.91833 1.70554 1.30528 1.22492 1.19778 0.83067 0.79491 0.69653 0.75710 1.18779 1.18852 1.19929 1.83929 1.73899 1.34576 1.21127 1.19975 1.10447 0.98239 0.81215 1.18890 0.99261 0.93406 0.94857 1.20382 1.05417 1.00490 0.90142 1.20774 0.99635 0.92424 0.99960 1.19659 1.04580 0.97357 0.91674 1.20725 1.01962 0.95636 0.96914 1.18927 1.02511 0.94572 0.91430 1.20841 1.01384 0.93407 1.01175 0.91334 0.95054 0.93437 0.92216 0.94188 0.89996 0.85878 0.83392 0.90690 0.90251 0.90712 0.90642 0.88026 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.89 71.98 0.71 -4.22 16 2 C -0.01 -0.42 6.21 29.85 0.19 -0.23 16 3 C -0.38 -19.04 5.55 -18.94 -0.11 -19.15 16 4 C 0.19 10.06 6.48 22.82 0.15 10.21 16 5 C -0.49 -27.11 9.49 23.12 0.22 -26.89 16 6 H 0.09 5.14 7.36 -2.91 -0.02 5.11 16 7 C 0.02 0.91 5.52 85.35 0.47 1.38 16 8 N -0.81 -42.89 13.65 21.89 0.30 -42.59 16 9 Si 1.10 50.60 25.88 68.60 1.78 52.37 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.26 -12.06 6.82 99.48 0.68 -11.38 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 O -0.23 -12.10 5.97 -18.34 -0.11 -12.21 16 14 C -0.05 -2.61 7.03 23.07 0.16 -2.44 16 15 C -0.06 -2.98 6.13 -21.37 -0.13 -3.11 16 16 C -0.15 -5.63 10.08 22.37 0.23 -5.40 16 17 C -0.11 -3.56 9.61 22.02 0.21 -3.34 16 18 C -0.13 -4.28 5.89 -19.76 -0.12 -4.39 16 19 C -0.10 -2.08 9.58 71.23 0.68 -1.39 16 20 C -0.07 -2.88 5.89 -19.79 -0.12 -2.99 16 21 C -0.11 -3.56 9.60 71.24 0.68 -2.88 16 22 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.04 1.74 7.43 -2.39 -0.02 1.72 16 27 H 0.29 14.78 8.73 -92.71 -0.81 13.97 16 28 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 29 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 32 H 0.07 1.45 5.91 -2.39 -0.01 1.43 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.10 2.45 5.91 -2.39 -0.01 2.43 16 35 H 0.04 1.52 8.09 -2.39 -0.02 1.50 16 Total: -1.00 -60.97 289.97 6.21 -54.76 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.01 Total: 12.52 kcal Atomic # 6 Polarization: -68.08 SS G_CDS: 3.23 Total: -64.85 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.30 Total: -42.59 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.11 Total: -12.21 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 1.78 Total: 52.37 kcal Total: -60.97 6.21 -54.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077070146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.709 kcal (2) G-P(sol) polarization free energy of solvation -60.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds