Wall clock time and date at job start Mon Mar 30 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.39025 * 126.69662 * 269.68877 * 3 2 1 5 5 C 1.39719 * 125.53406 * 359.96625 * 4 3 2 6 6 H 1.07997 * 120.00483 * 359.97438 * 5 4 3 7 7 C 1.40265 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.30709 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46743 * 90.00447 * 9 7 5 11 11 H 1.48501 * 109.47356 * 210.00318 * 9 7 5 12 12 H 1.48501 * 109.47220 * 330.00507 * 9 7 5 13 13 O 1.35136 * 108.92588 * 179.82740 * 4 3 2 14 14 C 1.35037 * 109.92847 * 0.45046 * 13 4 3 15 15 C 1.41068 * 107.95202 * 359.72251 * 14 13 4 16 16 C 1.40231 * 119.86438 * 180.02562 * 15 14 13 17 17 C 1.36583 * 119.74077 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.76081 * 180.02562 * 17 16 15 19 19 C 1.38804 * 120.47643 * 359.97438 * 17 16 15 20 20 C 1.38117 * 120.73458 * 0.02612 * 19 17 16 21 21 C 1.50697 * 120.03298 * 179.97438 * 20 19 17 22 22 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 0.96996 * 120.00407 * 179.97438 * 8 7 5 28 28 H 1.08007 * 120.12793 * 180.02562 * 16 15 14 29 29 H 1.09003 * 109.47147 * 89.99716 * 18 17 16 30 30 H 1.08996 * 109.47309 * 209.99419 * 18 17 16 31 31 H 1.08999 * 109.47590 * 330.00115 * 18 17 16 32 32 H 1.08007 * 119.63056 * 180.02562 * 19 17 16 33 33 H 1.08999 * 109.47284 * 89.99817 * 21 20 19 34 34 H 1.08999 * 109.47275 * 210.00433 * 21 20 19 35 35 H 1.09002 * 109.47510 * 330.00112 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3149 2.2021 -1.1147 5 6 2.1802 1.7975 -2.4452 6 1 1.8306 0.8016 -2.6741 7 6 2.4992 2.6847 -3.4838 8 7 2.9229 3.8898 -3.2069 9 14 2.3198 2.1435 -5.2627 10 1 0.9517 2.4652 -5.7424 11 1 3.3182 2.8559 -6.0999 12 1 2.5469 0.6792 -5.3599 13 8 2.7381 3.4174 -0.7023 14 6 2.7551 3.4654 0.6471 15 6 2.3136 2.2164 1.1322 16 6 2.2340 1.9926 2.5142 17 6 2.5844 2.9867 3.3829 18 6 2.4996 2.7464 4.8682 19 6 3.0190 4.2162 2.9075 20 6 3.1050 4.4579 1.5503 21 6 3.5784 5.7989 1.0516 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1438 4.5032 -3.9251 28 1 1.8969 1.0379 2.8903 29 1 3.4483 2.3468 5.2264 30 1 2.2863 3.6866 5.3768 31 1 1.7029 2.0321 5.0759 32 1 3.2931 4.9925 3.6066 33 1 4.6616 5.7802 0.9318 34 1 3.1102 6.0153 0.0913 35 1 3.3057 6.5711 1.7709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077070869.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:52 Heat of formation + Delta-G solvation = -21.470607 kcal Electronic energy + Delta-G solvation = -17418.270917 eV Core-core repulsion = 14766.678741 eV Total energy + Delta-G solvation = -2651.592177 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74049 -37.13274 -34.13919 -33.58000 -32.27987 -30.35146 -28.91375 -26.66709 -25.82224 -24.94116 -22.43581 -21.00294 -20.10138 -18.04788 -17.74850 -15.85720 -15.33219 -14.63028 -14.51860 -14.21652 -13.30361 -13.08776 -13.03004 -12.86186 -12.51842 -12.38721 -12.13586 -11.91364 -11.49905 -11.42948 -11.29465 -11.24281 -11.09793 -10.65942 -10.47120 -10.37882 -10.18949 -9.88876 -9.66098 -9.47367 -8.45106 -7.30392 -7.11450 -6.90371 -4.59647 2.17173 2.58541 2.84818 2.90847 2.95799 3.68227 3.70392 4.53849 4.79934 5.02531 5.57594 5.62701 5.81794 6.00848 6.01701 6.06146 6.09476 6.16199 6.27693 6.29268 6.38355 6.42816 6.54583 6.58465 6.67728 6.71840 6.77958 6.88967 7.13628 7.20080 7.22749 7.29481 7.56354 7.67880 7.76265 7.84641 8.04812 8.37017 8.48453 9.02419 9.85428 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.008055 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.815484 B = 3475.362976 C = 4477.813490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 C -0.389 4.389 4 C 0.247 3.753 5 C -0.422 4.422 6 H 0.111 0.889 7 C 0.065 3.935 8 N -0.757 5.757 9 Si 0.926 3.074 10 H -0.264 1.264 11 H -0.273 1.273 12 H -0.256 1.256 13 O -0.168 6.168 14 C -0.024 4.024 15 C -0.031 4.031 16 C -0.150 4.150 17 C -0.093 4.093 18 C -0.101 4.101 19 C -0.181 4.181 20 C -0.054 4.054 21 C -0.104 4.104 22 H 0.051 0.949 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.290 0.710 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -0.726 3.738 3.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 C -0.392 4.392 4 C 0.196 3.804 5 C -0.449 4.449 6 H 0.129 0.871 7 C -0.159 4.159 8 N -0.380 5.380 9 Si 0.749 3.251 10 H -0.188 1.188 11 H -0.197 1.197 12 H -0.179 1.179 13 O -0.068 6.068 14 C -0.071 4.071 15 C -0.032 4.032 16 C -0.168 4.168 17 C -0.093 4.093 18 C -0.158 4.158 19 C -0.199 4.199 20 C -0.054 4.054 21 C -0.161 4.161 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.454 -0.261 3.495 3.534 hybrid contribution -0.067 -0.167 -0.701 0.724 sum -0.521 -0.428 2.794 2.874 Atomic orbital electron populations 1.21775 0.97721 0.98946 1.01433 1.19198 0.93432 0.92495 0.99361 1.19502 1.30351 0.99076 0.90243 1.19377 0.87633 0.79983 0.93367 1.19011 1.38308 1.00718 0.86906 0.87105 1.26294 0.92336 0.94195 1.03063 1.69727 1.26920 1.05056 1.36329 0.85994 0.79311 0.80388 0.79444 1.18849 1.19725 1.17947 1.84610 1.71567 1.33326 1.17307 1.19499 1.08134 0.96280 0.83214 1.18591 0.97651 0.93576 0.93374 1.19837 1.07420 0.98401 0.91153 1.19086 1.01451 0.94231 0.94528 1.20633 1.01070 1.01112 0.92947 1.20058 1.09697 0.97303 0.92842 1.18502 1.01831 0.93831 0.91273 1.20619 1.00651 0.93651 1.01143 0.92975 0.94689 0.93777 0.94107 0.93125 0.89919 0.88054 0.92406 0.92600 0.92573 0.87434 0.92205 0.91579 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.89 37.16 0.37 -2.32 16 2 C -0.01 -0.16 6.20 -27.88 -0.17 -0.33 16 3 C -0.39 -9.78 5.55 -103.20 -0.57 -10.36 16 4 C 0.25 6.67 6.75 -38.74 -0.26 6.41 16 5 C -0.42 -10.66 9.03 -38.27 -0.35 -11.00 16 6 H 0.11 2.60 7.19 -52.49 -0.38 2.22 16 7 C 0.07 1.55 5.50 -17.27 -0.09 1.45 16 8 N -0.76 -19.06 11.96 55.57 0.66 -18.39 16 9 Si 0.93 17.37 29.56 -169.99 -5.03 12.35 16 10 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 11 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 12 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 13 O -0.17 -4.67 8.90 1.31 0.01 -4.66 16 14 C -0.02 -0.63 7.03 -38.34 -0.27 -0.90 16 15 C -0.03 -0.78 6.13 -106.95 -0.66 -1.43 16 16 C -0.15 -3.29 9.70 -39.43 -0.38 -3.67 16 17 C -0.09 -1.84 5.84 -105.01 -0.61 -2.45 16 18 C -0.10 -1.52 9.99 36.01 0.36 -1.16 16 19 C -0.18 -3.63 9.33 -39.42 -0.37 -4.00 16 20 C -0.05 -1.20 5.89 -104.50 -0.62 -1.82 16 21 C -0.10 -1.98 10.02 36.00 0.36 -1.62 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 1.04 7.46 -51.93 -0.39 0.66 16 27 H 0.29 6.51 8.29 -40.82 -0.34 6.17 16 28 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.06 0.78 8.08 -51.93 -0.42 0.37 16 32 H 0.11 1.85 8.06 -52.48 -0.42 1.42 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 35 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 LS Contribution 298.85 15.07 4.50 4.50 Total: -1.00 -27.93 298.85 -8.07 -36.00 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.96 Total: 3.41 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: -3.26 Total: -33.20 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: 0.66 Total: -18.39 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.01 Total: -4.66 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.93 -8.07 -36.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077070869.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.529 kcal (2) G-P(sol) polarization free energy of solvation -27.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds