Wall clock time and date at job start Mon Mar 30 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.39025 * 126.69662 * 269.68877 * 3 2 1 5 5 C 1.39719 * 125.53406 * 359.96625 * 4 3 2 6 6 H 1.07997 * 120.00483 * 359.97438 * 5 4 3 7 7 C 1.40265 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.30709 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46743 * 90.00447 * 9 7 5 11 11 H 1.48501 * 109.47356 * 210.00318 * 9 7 5 12 12 H 1.48501 * 109.47220 * 330.00507 * 9 7 5 13 13 O 1.35136 * 108.92588 * 179.82740 * 4 3 2 14 14 C 1.35037 * 109.92847 * 0.45046 * 13 4 3 15 15 C 1.41068 * 107.95202 * 359.72251 * 14 13 4 16 16 C 1.40231 * 119.86438 * 180.02562 * 15 14 13 17 17 C 1.36583 * 119.74077 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.76081 * 180.02562 * 17 16 15 19 19 C 1.38804 * 120.47643 * 359.97438 * 17 16 15 20 20 C 1.38117 * 120.73458 * 0.02612 * 19 17 16 21 21 C 1.50697 * 120.03298 * 179.97438 * 20 19 17 22 22 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 0.96996 * 120.00407 * 179.97438 * 8 7 5 28 28 H 1.08007 * 120.12793 * 180.02562 * 16 15 14 29 29 H 1.09003 * 109.47147 * 89.99716 * 18 17 16 30 30 H 1.08996 * 109.47309 * 209.99419 * 18 17 16 31 31 H 1.08999 * 109.47590 * 330.00115 * 18 17 16 32 32 H 1.08007 * 119.63056 * 180.02562 * 19 17 16 33 33 H 1.08999 * 109.47284 * 89.99817 * 21 20 19 34 34 H 1.08999 * 109.47275 * 210.00433 * 21 20 19 35 35 H 1.09002 * 109.47510 * 330.00112 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3149 2.2021 -1.1147 5 6 2.1802 1.7975 -2.4452 6 1 1.8306 0.8016 -2.6741 7 6 2.4992 2.6847 -3.4838 8 7 2.9229 3.8898 -3.2069 9 14 2.3198 2.1435 -5.2627 10 1 0.9517 2.4652 -5.7424 11 1 3.3182 2.8559 -6.0999 12 1 2.5469 0.6792 -5.3599 13 8 2.7381 3.4174 -0.7023 14 6 2.7551 3.4654 0.6471 15 6 2.3136 2.2164 1.1322 16 6 2.2340 1.9926 2.5142 17 6 2.5844 2.9867 3.3829 18 6 2.4996 2.7464 4.8682 19 6 3.0190 4.2162 2.9075 20 6 3.1050 4.4579 1.5503 21 6 3.5784 5.7989 1.0516 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.1438 4.5032 -3.9251 28 1 1.8969 1.0379 2.8903 29 1 3.4483 2.3468 5.2264 30 1 2.2863 3.6866 5.3768 31 1 1.7029 2.0321 5.0759 32 1 3.2931 4.9925 3.6066 33 1 4.6616 5.7802 0.9318 34 1 3.1102 6.0153 0.0913 35 1 3.3057 6.5711 1.7709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077070869.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:52 Heat of formation + Delta-G solvation = -34.883828 kcal Electronic energy + Delta-G solvation = -17418.852558 eV Core-core repulsion = 14766.678741 eV Total energy + Delta-G solvation = -2652.173817 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.57894 -38.82426 -35.92884 -35.33789 -33.85562 -32.00481 -30.73762 -28.16612 -27.51476 -26.62669 -24.12209 -22.77642 -21.77469 -19.84039 -19.55814 -17.62810 -17.07836 -16.42747 -16.30184 -15.82554 -14.91476 -14.70346 -14.46521 -14.42019 -14.02086 -13.92542 -13.79408 -13.31104 -13.08823 -13.06604 -13.04096 -12.86641 -12.54835 -12.23672 -12.02235 -11.97240 -11.86163 -11.55564 -11.36996 -11.20218 -10.22586 -9.09123 -8.88454 -8.69162 -6.47242 0.42677 0.85953 1.32107 1.35061 1.52636 1.94393 2.11168 2.73218 3.03323 3.19178 4.02202 4.12345 4.30480 4.37190 4.53074 4.57809 4.68990 4.71253 4.76687 4.80214 4.89316 4.94078 4.94971 4.96856 5.06933 5.09416 5.13993 5.31145 5.47254 5.52762 5.54307 5.58741 5.86593 5.87864 6.02277 6.08972 6.29548 6.55623 6.64492 7.13205 8.12007 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.008055 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.815484 B = 3475.362976 C = 4477.813490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.007 4.007 3 C -0.405 4.405 4 C 0.206 3.794 5 C -0.450 4.450 6 H 0.120 0.880 7 C 0.021 3.979 8 N -0.801 5.801 9 Si 1.005 2.995 10 H -0.256 1.256 11 H -0.264 1.264 12 H -0.247 1.247 13 O -0.195 6.195 14 C -0.074 4.074 15 C -0.060 4.060 16 C -0.161 4.161 17 C -0.088 4.088 18 C -0.097 4.097 19 C -0.172 4.172 20 C -0.070 4.070 21 C -0.098 4.098 22 H 0.036 0.964 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.297 0.703 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -1.044 5.284 5.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.044 4.044 3 C -0.408 4.408 4 C 0.155 3.845 5 C -0.478 4.478 6 H 0.137 0.863 7 C -0.198 4.198 8 N -0.425 5.425 9 Si 0.823 3.177 10 H -0.181 1.181 11 H -0.189 1.189 12 H -0.170 1.170 13 O -0.096 6.096 14 C -0.121 4.121 15 C -0.061 4.061 16 C -0.179 4.179 17 C -0.089 4.089 18 C -0.154 4.154 19 C -0.190 4.190 20 C -0.071 4.071 21 C -0.154 4.154 22 H 0.055 0.945 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.134 0.866 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.638 -0.583 5.071 5.144 hybrid contribution 0.022 -0.008 -0.929 0.929 sum -0.616 -0.591 4.142 4.229 Atomic orbital electron populations 1.21659 0.95954 1.00858 1.00377 1.19264 0.94918 0.90471 0.99749 1.20035 1.30134 1.00595 0.90028 1.19980 0.89246 0.80439 0.94815 1.19374 1.39531 1.01630 0.87236 0.86259 1.27341 0.91102 0.93732 1.07643 1.69815 1.28094 1.06465 1.38152 0.84846 0.79569 0.80269 0.73025 1.18053 1.18852 1.16970 1.84523 1.72278 1.34107 1.18734 1.20186 1.10707 0.98186 0.82977 1.18989 0.98669 0.93610 0.94865 1.20158 1.07670 0.99907 0.90187 1.19696 0.98817 0.93231 0.97118 1.20703 1.02577 1.02940 0.89151 1.20604 1.07612 0.98440 0.92334 1.19088 1.01511 0.94474 0.92020 1.20612 1.00871 0.93156 1.00805 0.94481 0.91166 0.94347 0.93072 0.93173 0.89186 0.86559 0.90591 0.90236 0.91368 0.83482 0.91309 0.94069 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.89 71.98 0.71 -4.23 16 2 C -0.01 -0.28 6.20 29.85 0.19 -0.10 16 3 C -0.41 -21.25 5.55 -18.94 -0.11 -21.36 16 4 C 0.21 11.77 6.75 22.82 0.15 11.92 16 5 C -0.45 -23.90 9.03 23.12 0.21 -23.69 16 6 H 0.12 5.83 7.19 -2.91 -0.02 5.81 16 7 C 0.02 1.04 5.50 85.35 0.47 1.51 16 8 N -0.80 -42.37 11.96 21.89 0.26 -42.10 16 9 Si 1.01 36.11 29.56 68.60 2.03 38.14 16 10 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 11 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 12 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 13 O -0.19 -11.59 8.90 -18.25 -0.16 -11.76 16 14 C -0.07 -4.00 7.03 23.07 0.16 -3.84 16 15 C -0.06 -3.12 6.13 -21.37 -0.13 -3.25 16 16 C -0.16 -6.96 9.70 22.37 0.22 -6.74 16 17 C -0.09 -3.27 5.84 -20.12 -0.12 -3.39 16 18 C -0.10 -2.50 9.99 71.24 0.71 -1.78 16 19 C -0.17 -6.47 9.33 22.38 0.21 -6.26 16 20 C -0.07 -3.14 5.89 -19.79 -0.12 -3.26 16 21 C -0.10 -3.70 10.02 71.23 0.71 -2.99 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 2.11 7.46 -2.39 -0.02 2.09 16 27 H 0.30 13.95 8.29 -92.71 -0.77 13.19 16 28 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.70 8.08 -2.39 -0.02 1.69 16 31 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 32 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.04 1.73 8.09 -2.39 -0.02 1.71 16 35 H 0.09 2.74 8.09 -2.39 -0.02 2.72 16 Total: -1.00 -64.99 298.85 6.47 -58.52 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 1.07 Total: 24.65 kcal Atomic # 6 Polarization: -70.72 SS G_CDS: 3.27 Total: -67.45 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.26 Total: -42.10 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.16 Total: -11.76 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -64.99 6.47 -58.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077070869.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.634 kcal (2) G-P(sol) polarization free energy of solvation -64.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds