Wall clock time and date at job start Mon Mar 30 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50697 * 109.47202 * 2 1 4 4 C 1.39014 * 126.70160 * 269.97885 * 3 2 1 5 5 C 1.39728 * 125.53847 * 0.02562 * 4 3 2 6 6 H 1.07999 * 119.99693 * 359.97438 * 5 4 3 7 7 C 1.40270 * 119.99659 * 179.97438 * 5 4 3 8 8 N 1.30707 * 120.00599 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99523 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47082 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47007 * 120.00269 * 9 7 5 12 12 H 1.48500 * 109.47146 * 240.00100 * 9 7 5 13 13 O 1.35134 * 108.92406 * 180.02562 * 4 3 2 14 14 C 1.35043 * 109.92704 * 359.97438 * 13 4 3 15 15 C 1.38722 * 132.79688 * 180.02562 * 14 13 4 16 16 C 1.38075 * 119.93481 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.63247 * 180.02562 * 16 15 14 18 18 C 1.38857 * 120.73520 * 0.03693 * 16 15 14 19 19 C 1.36540 * 120.47371 * 359.94138 * 18 16 15 20 20 C 1.50709 * 120.12964 * 180.31075 * 19 18 16 21 21 C 1.40275 * 119.74136 * 0.03879 * 19 18 16 22 22 H 1.09002 * 109.46993 * 59.99504 * 1 2 3 23 23 H 1.09003 * 109.47207 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46682 * 299.99397 * 1 2 3 25 25 H 1.08996 * 109.46791 * 240.00257 * 2 1 3 26 26 H 1.09002 * 109.46993 * 120.00496 * 2 1 3 27 27 H 0.97000 * 120.00461 * 179.97438 * 8 7 5 28 28 H 1.08000 * 120.03037 * 359.95419 * 15 14 13 29 29 H 1.09004 * 109.47143 * 90.00012 * 17 16 15 30 30 H 1.08995 * 109.47123 * 209.99899 * 17 16 15 31 31 H 1.09001 * 109.47524 * 330.00050 * 17 16 15 32 32 H 1.08001 * 119.76221 * 179.97438 * 18 16 15 33 33 H 1.08999 * 109.47283 * 269.72535 * 20 19 18 34 34 H 1.09000 * 109.46618 * 29.72485 * 20 19 18 35 35 H 1.08998 * 109.46571 * 149.72465 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3098 2.2039 -1.1146 5 6 2.1677 1.8021 -2.4453 6 1 1.8159 0.8070 -2.6742 7 6 2.4819 2.6912 -3.4837 8 7 2.9081 3.8954 -3.2066 9 14 2.2926 2.1537 -5.2627 10 1 1.7978 0.7543 -5.3070 11 1 1.3213 3.0437 -5.9479 12 1 3.6078 2.2361 -5.9473 13 8 2.7391 3.4170 -0.7020 14 6 2.7554 3.4650 0.6475 15 6 3.1058 4.4575 1.5512 16 6 3.0191 4.2159 2.9078 17 6 3.4010 5.2991 3.8835 18 6 2.5841 2.9859 3.3833 19 6 2.2329 1.9927 2.5147 20 6 1.7552 0.6630 3.0392 21 6 2.3130 2.2166 1.1323 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.1258 4.5101 -3.9247 28 1 3.4465 5.4180 1.1938 29 1 2.5241 5.9028 4.1177 30 1 3.7849 4.8461 4.7974 31 1 4.1701 5.9321 3.4409 32 1 2.5227 2.8138 4.4477 33 1 2.6071 -0.0052 3.1653 34 1 1.2615 0.8077 4.0001 35 1 1.0515 0.2249 2.3314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077071227.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:20 Heat of formation + Delta-G solvation = -18.671013 kcal Electronic energy + Delta-G solvation = -17482.975572 eV Core-core repulsion = 14831.504795 eV Total energy + Delta-G solvation = -2651.470777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76204 -37.17928 -34.30105 -33.76265 -31.83440 -30.00455 -29.20732 -27.20418 -26.35577 -23.96829 -22.37921 -21.13697 -20.15177 -18.24701 -17.65174 -15.81734 -15.23283 -14.92967 -14.49443 -14.05923 -13.52221 -13.22861 -13.01107 -12.81668 -12.56079 -12.37508 -12.13265 -11.77389 -11.52372 -11.49311 -11.40997 -11.19517 -10.86893 -10.63133 -10.46194 -10.33845 -10.20387 -9.89284 -9.66592 -9.42209 -8.42005 -7.41047 -7.11500 -6.89200 -4.57121 2.15068 2.59555 2.83156 2.90926 2.97298 3.68169 3.70244 4.51453 4.79039 5.01516 5.60070 5.73656 5.85810 5.97415 6.00536 6.03844 6.09669 6.10689 6.28406 6.31742 6.37222 6.41116 6.53214 6.59846 6.65380 6.67345 6.75847 6.87270 7.13488 7.18750 7.24458 7.28880 7.54021 7.68350 7.76389 7.84652 8.03790 8.36781 8.48204 9.01859 9.85445 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.008055 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.646427 B = 3475.093228 C = 4489.078431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 C -0.384 4.384 4 C 0.246 3.754 5 C -0.421 4.421 6 H 0.112 0.888 7 C 0.064 3.936 8 N -0.757 5.757 9 Si 0.926 3.074 10 H -0.255 1.255 11 H -0.269 1.269 12 H -0.269 1.269 13 O -0.170 6.170 14 C -0.020 4.020 15 C -0.089 4.089 16 C -0.151 4.151 17 C -0.091 4.091 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.103 4.103 21 C -0.035 4.035 22 H 0.051 0.949 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.289 0.711 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 -1.899 4.131 4.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.050 4.050 3 C -0.386 4.386 4 C 0.195 3.805 5 C -0.449 4.449 6 H 0.130 0.870 7 C -0.159 4.159 8 N -0.381 5.381 9 Si 0.749 3.251 10 H -0.178 1.178 11 H -0.194 1.194 12 H -0.193 1.193 13 O -0.071 6.071 14 C -0.067 4.067 15 C -0.108 4.108 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.139 4.139 19 C -0.114 4.114 20 C -0.160 4.160 21 C -0.036 4.036 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.907 -1.443 3.889 4.246 hybrid contribution -0.033 -0.028 -0.749 0.750 sum -0.940 -1.471 3.141 3.593 Atomic orbital electron populations 1.21830 0.97774 0.98993 1.01482 1.19339 0.93405 0.92604 0.99633 1.19465 1.30097 0.98942 0.90136 1.19382 0.87771 0.79962 0.93410 1.19054 1.38210 1.00754 0.86889 0.87042 1.26303 0.92360 0.94182 1.03096 1.69737 1.27018 1.05058 1.36258 0.85945 0.79158 0.80406 0.79639 1.17804 1.19358 1.19348 1.84629 1.71412 1.33676 1.17343 1.19671 1.07197 0.96544 0.83265 1.19435 1.03943 0.96822 0.90602 1.19037 1.07781 0.95883 0.92435 1.20499 1.00235 0.96672 0.97386 1.20076 1.03011 0.93168 0.97647 1.18825 1.05156 0.96063 0.91386 1.20727 1.00409 0.94923 0.99913 1.18460 0.98581 0.93712 0.92833 0.92939 0.94650 0.93630 0.93245 0.93374 0.89955 0.87472 0.92768 0.92752 0.92735 0.87965 0.92852 0.93362 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.51 37.16 0.35 -2.31 16 2 C -0.01 -0.26 5.28 -27.88 -0.15 -0.41 16 3 C -0.38 -9.51 5.55 -103.21 -0.57 -10.09 16 4 C 0.25 6.61 6.75 -38.74 -0.26 6.35 16 5 C -0.42 -10.64 9.03 -38.26 -0.35 -10.99 16 6 H 0.11 2.61 7.20 -52.49 -0.38 2.23 16 7 C 0.06 1.54 5.50 -17.27 -0.09 1.44 16 8 N -0.76 -19.23 11.96 55.57 0.66 -18.56 16 9 Si 0.93 17.41 29.56 -169.99 -5.03 12.39 16 10 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 11 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 12 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 13 O -0.17 -4.79 8.90 1.29 0.01 -4.78 16 14 C -0.02 -0.51 7.37 -38.34 -0.28 -0.80 16 15 C -0.09 -2.02 9.70 -39.46 -0.38 -2.40 16 16 C -0.15 -3.01 5.89 -104.45 -0.62 -3.62 16 17 C -0.09 -1.40 9.99 36.01 0.36 -1.04 16 18 C -0.12 -2.40 9.26 -39.97 -0.37 -2.77 16 19 C -0.11 -2.45 5.89 -104.47 -0.62 -3.07 16 20 C -0.10 -1.84 9.02 36.01 0.32 -1.52 16 21 C -0.03 -0.86 5.99 -106.94 -0.64 -1.50 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.85 7.20 -51.93 -0.37 0.48 16 25 H 0.05 1.01 7.48 -51.93 -0.39 0.62 16 26 H 0.05 0.93 6.08 -51.93 -0.32 0.62 16 27 H 0.29 6.54 8.29 -40.82 -0.34 6.20 16 28 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 31 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.07 1.27 4.45 -51.93 -0.23 1.04 16 LS Contribution 290.10 15.07 4.37 4.37 Total: -1.00 -27.95 290.10 -7.89 -35.84 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.62 Total: 3.45 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -3.29 Total: -32.71 kcal Atomic # 7 Polarization: -19.23 SS G_CDS: 0.66 Total: -18.56 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.01 Total: -4.78 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.95 -7.89 -35.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077071227.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.166 kcal (2) G-P(sol) polarization free energy of solvation -27.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds