Wall clock time and date at job start Mon Mar 30 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 S 1.81401 * 109.47457 * 239.99872 * 2 1 3 13 13 O 1.42100 * 109.47247 * 171.38934 * 12 2 1 14 14 C 1.81401 * 103.00073 * 54.99992 * 12 2 1 15 15 H 1.09002 * 109.47273 * 295.00760 * 14 12 2 16 16 C 1.53002 * 109.46708 * 54.99767 * 14 12 2 17 17 C 1.52999 * 109.46829 * 179.97438 * 16 14 12 18 18 C 1.53004 * 109.47601 * 300.00513 * 17 16 14 19 19 C 1.53000 * 109.46955 * 60.00053 * 18 17 16 20 20 H 1.08993 * 109.47088 * 59.99977 * 19 18 17 21 21 C 1.52999 * 109.47044 * 180.02562 * 19 18 17 22 22 C 1.52995 * 109.47354 * 175.00164 * 14 12 2 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47633 * 300.00288 * 16 14 12 28 28 H 1.08998 * 109.47151 * 60.00564 * 16 14 12 29 29 H 1.09006 * 109.46958 * 180.02562 * 17 16 14 30 30 H 1.09001 * 109.47518 * 60.00711 * 17 16 14 31 31 H 1.08997 * 109.46558 * 299.99918 * 18 17 16 32 32 H 1.08994 * 109.47114 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.47371 * 179.97438 * 21 19 18 34 34 H 1.09002 * 109.46987 * 299.99712 * 21 19 18 35 35 H 1.08998 * 109.47420 * 59.99341 * 21 19 18 36 36 H 1.08997 * 109.46652 * 300.00052 * 22 14 12 37 37 H 1.08996 * 109.47370 * 60.00037 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 16 2.1348 -0.8551 -1.4811 13 8 3.5416 -0.6839 -1.5857 14 6 1.3150 0.0373 -2.8309 15 1 0.2376 -0.1141 -2.7651 16 6 1.6277 1.5309 -2.7186 17 6 0.9368 2.2836 -3.8575 18 6 1.4455 1.7555 -5.2004 19 6 1.1328 0.2620 -5.3126 20 1 0.0554 0.1106 -5.2472 21 6 1.6420 -0.2662 -6.6552 22 6 1.8232 -0.4906 -4.1740 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7086 1.1614 3.4844 27 1 1.2657 1.9070 -1.7617 28 1 2.7051 1.6825 -2.7844 29 1 1.1600 3.3475 -3.7777 30 1 -0.1406 2.1321 -3.7921 31 1 2.5229 1.9071 -5.2657 32 1 0.9537 2.2921 -6.0116 33 1 1.4196 -1.3302 -6.7350 34 1 1.1501 0.2701 -7.4668 35 1 2.7194 -0.1146 -6.7203 36 1 2.9006 -0.3390 -4.2398 37 1 1.6004 -1.5545 -4.2540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:13 Heat of formation + Delta-G solvation = -75.911018 kcal Electronic energy + Delta-G solvation = -16458.109653 eV Core-core repulsion = 13939.600715 eV Total energy + Delta-G solvation = -2518.508939 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.40456 -34.54851 -34.04295 -32.47602 -30.64769 -30.19208 -26.26907 -25.28441 -22.54310 -21.52806 -21.03663 -19.55243 -16.80684 -16.12296 -15.26997 -15.06950 -14.42100 -14.29876 -14.07861 -13.59892 -13.36921 -12.89608 -12.64162 -12.28716 -12.11908 -11.62624 -11.58498 -11.36305 -11.09475 -10.93035 -10.83221 -10.80162 -10.61915 -10.41672 -10.31440 -10.19748 -10.12778 -9.88340 -9.20470 -8.62829 -8.40544 -7.03340 -6.10682 -4.22159 2.61697 3.26842 3.33240 3.37227 3.83491 4.35714 4.75341 4.85209 4.92854 5.02061 5.20291 5.33404 5.38596 5.57524 5.64178 5.69914 5.75398 5.82047 5.89697 5.95198 6.07524 6.14141 6.32053 6.36740 6.41115 6.47925 6.50621 6.61093 6.70140 6.78045 6.84977 7.37632 7.67335 7.83729 8.14797 8.79016 9.42848 10.94532 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.045479 B = 0.006213 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.523249 B = 4505.711819 C = 4811.050227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.219 4.219 3 H 0.046 0.954 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.071 3.929 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.269 1.269 12 S 1.188 4.812 13 O -0.869 6.869 14 C -0.411 4.411 15 H 0.114 0.886 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.087 4.087 20 H 0.070 0.930 21 C -0.147 4.147 22 C -0.087 4.087 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.018 0.982 26 H 0.262 0.738 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -2.114 -13.193 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.341 4.341 3 H 0.064 0.936 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.132 4.132 7 N -0.521 5.521 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.194 1.194 12 S 1.392 4.608 13 O -0.865 6.865 14 C -0.526 4.526 15 H 0.132 0.868 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.107 4.107 20 H 0.088 0.912 21 C -0.205 4.205 22 C -0.125 4.125 23 H 0.061 0.939 24 H 0.108 0.892 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.786 -2.778 -13.168 13.981 hybrid contribution 0.811 1.969 0.970 2.340 sum -2.975 -0.809 -12.198 12.582 Atomic orbital electron populations 1.21566 0.95038 1.00293 1.01332 1.24615 0.99573 1.04223 1.05694 0.93563 1.20466 1.32083 1.12826 0.89187 0.91948 1.24915 0.94574 0.94807 0.98955 1.69878 1.35977 1.22560 1.23648 0.86497 0.78668 0.80266 0.82113 1.20580 1.20984 1.19386 1.69602 0.89877 1.13592 0.87739 1.92986 1.25393 1.83543 1.84556 1.27668 1.10042 1.04044 1.10872 0.86805 1.21564 1.00527 0.93771 0.99109 1.21499 1.00153 0.98822 0.94714 1.21573 1.00886 0.95482 0.97048 1.21097 1.00183 0.95011 0.94365 0.91178 1.21845 1.01109 1.00792 0.96731 1.21208 1.00124 0.99042 0.92132 0.93907 0.89151 0.96338 0.92764 0.91020 0.92309 0.92648 0.92029 0.92403 0.92601 0.92647 0.93058 0.92894 0.91922 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 8.71 37.16 0.32 -2.30 16 2 C -0.22 -5.27 2.08 -27.88 -0.06 -5.32 16 3 H 0.05 1.26 7.19 -51.92 -0.37 0.88 16 4 C -0.51 -13.69 8.58 -34.44 -0.30 -13.99 16 5 H 0.06 1.67 7.71 -52.49 -0.40 1.27 16 6 C 0.07 1.94 5.30 -17.82 -0.09 1.85 16 7 N -0.88 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 S 1.19 23.67 12.10 -107.50 -1.30 22.36 16 13 O -0.87 -22.27 18.13 -35.23 -0.64 -22.91 16 14 C -0.41 -6.62 1.97 -26.73 -0.05 -6.67 16 15 H 0.11 1.61 7.19 -51.92 -0.37 1.24 16 16 C -0.11 -1.94 4.94 -26.73 -0.13 -2.07 16 17 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 18 C -0.11 -1.42 5.20 -26.73 -0.14 -1.56 16 19 C -0.09 -1.05 2.72 -90.64 -0.25 -1.30 16 20 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.15 -1.52 9.19 37.16 0.34 -1.18 16 22 C -0.09 -1.24 4.48 -26.76 -0.12 -1.36 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 25 H 0.02 0.33 6.29 -51.93 -0.33 0.00 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.07 1.36 6.29 -51.93 -0.33 1.03 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 298.24 15.07 4.49 4.49 Total: -1.00 -32.06 298.24 -8.80 -40.86 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.33 Total: -1.10 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: -0.63 Total: -35.65 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.63 Total: -24.05 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.64 Total: -22.91 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 23.67 SS G_CDS: -1.30 Total: 22.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.06 -8.80 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.052 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds