Wall clock time and date at job start Mon Mar 30 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 S 1.81401 * 109.47457 * 239.99872 * 2 1 3 13 13 O 1.42100 * 109.47247 * 171.38934 * 12 2 1 14 14 C 1.81401 * 103.00073 * 54.99992 * 12 2 1 15 15 H 1.09002 * 109.47273 * 295.00760 * 14 12 2 16 16 C 1.53002 * 109.46708 * 54.99767 * 14 12 2 17 17 C 1.52999 * 109.46829 * 179.97438 * 16 14 12 18 18 C 1.53004 * 109.47601 * 300.00513 * 17 16 14 19 19 C 1.53000 * 109.46955 * 60.00053 * 18 17 16 20 20 H 1.08993 * 109.47088 * 59.99977 * 19 18 17 21 21 C 1.52999 * 109.47044 * 180.02562 * 19 18 17 22 22 C 1.52995 * 109.47354 * 175.00164 * 14 12 2 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47633 * 300.00288 * 16 14 12 28 28 H 1.08998 * 109.47151 * 60.00564 * 16 14 12 29 29 H 1.09006 * 109.46958 * 180.02562 * 17 16 14 30 30 H 1.09001 * 109.47518 * 60.00711 * 17 16 14 31 31 H 1.08997 * 109.46558 * 299.99918 * 18 17 16 32 32 H 1.08994 * 109.47114 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.47371 * 179.97438 * 21 19 18 34 34 H 1.09002 * 109.46987 * 299.99712 * 21 19 18 35 35 H 1.08998 * 109.47420 * 59.99341 * 21 19 18 36 36 H 1.08997 * 109.46652 * 300.00052 * 22 14 12 37 37 H 1.08996 * 109.47370 * 60.00037 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 16 2.1348 -0.8551 -1.4811 13 8 3.5416 -0.6839 -1.5857 14 6 1.3150 0.0373 -2.8309 15 1 0.2376 -0.1141 -2.7651 16 6 1.6277 1.5309 -2.7186 17 6 0.9368 2.2836 -3.8575 18 6 1.4455 1.7555 -5.2004 19 6 1.1328 0.2620 -5.3126 20 1 0.0554 0.1106 -5.2472 21 6 1.6420 -0.2662 -6.6552 22 6 1.8232 -0.4906 -4.1740 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7086 1.1614 3.4844 27 1 1.2657 1.9070 -1.7617 28 1 2.7051 1.6825 -2.7844 29 1 1.1600 3.3475 -3.7777 30 1 -0.1406 2.1321 -3.7921 31 1 2.5229 1.9071 -5.2657 32 1 0.9537 2.2921 -6.0116 33 1 1.4196 -1.3302 -6.7350 34 1 1.1501 0.2701 -7.4668 35 1 2.7194 -0.1146 -6.7203 36 1 2.9006 -0.3390 -4.2398 37 1 1.6004 -1.5545 -4.2540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:13 Heat of formation + Delta-G solvation = -96.325428 kcal Electronic energy + Delta-G solvation = -16458.994889 eV Core-core repulsion = 13939.600715 eV Total energy + Delta-G solvation = -2519.394174 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.54677 -36.45439 -35.98952 -33.66260 -32.21926 -31.70530 -27.40522 -27.15090 -23.79976 -23.25395 -22.29205 -20.67855 -18.69082 -17.95688 -16.96267 -16.51559 -15.85336 -15.60660 -15.37971 -15.13982 -14.92816 -14.38792 -14.10024 -13.62578 -13.32980 -13.29487 -12.97732 -12.84539 -12.74535 -12.44461 -12.38611 -12.22678 -12.16950 -11.96802 -11.82886 -11.59029 -11.38887 -11.12148 -11.00270 -10.62713 -10.16070 -8.79242 -8.16198 -6.35405 0.99207 1.39560 1.41720 1.52340 2.16226 2.39594 3.06637 3.21598 3.71678 3.73066 3.98045 4.17069 4.24057 4.43002 4.51895 4.57247 4.65322 4.77836 4.82316 4.84524 4.97780 5.01496 5.03179 5.05073 5.12304 5.19242 5.20281 5.31435 5.36884 5.45735 5.46428 5.61072 5.67436 5.92560 6.22343 6.73760 7.32756 8.87403 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.045479 B = 0.006213 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.523249 B = 4505.711819 C = 4811.050227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.232 4.232 3 H -0.001 1.001 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.287 1.287 10 H -0.274 1.274 11 H -0.256 1.256 12 S 1.237 4.763 13 O -0.932 6.932 14 C -0.396 4.396 15 H 0.150 0.850 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.113 4.113 19 C -0.083 4.083 20 H 0.091 0.909 21 C -0.145 4.145 22 C -0.090 4.090 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.264 0.736 27 H 0.048 0.952 28 H 0.024 0.976 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 -3.185 -15.086 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.353 4.353 3 H 0.018 0.982 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.213 1.213 10 H -0.199 1.199 11 H -0.180 1.180 12 S 1.443 4.557 13 O -0.928 6.928 14 C -0.514 4.514 15 H 0.168 0.832 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.102 4.102 20 H 0.110 0.890 21 C -0.203 4.203 22 C -0.129 4.129 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.624 -3.868 -15.022 16.500 hybrid contribution 1.381 2.375 1.446 3.104 sum -4.243 -1.493 -13.577 14.302 Atomic orbital electron populations 1.21441 0.92853 1.01812 1.01271 1.24725 1.01539 1.01502 1.07492 0.98238 1.20867 1.32154 1.13033 0.90889 0.92439 1.25707 0.94782 0.95541 1.01815 1.70010 1.36828 1.23637 1.24220 0.85609 0.77791 0.79818 0.78893 1.21313 1.19851 1.17979 1.68652 0.87547 1.12852 0.86618 1.92876 1.29272 1.85058 1.85604 1.27540 1.11364 1.02656 1.09878 0.83187 1.21543 0.98784 0.95209 0.99733 1.21494 1.00808 0.98510 0.93948 1.21607 1.00156 0.96466 0.96809 1.21108 1.01084 0.93944 0.94084 0.89040 1.21825 1.00591 1.01811 0.96040 1.21323 0.98726 1.01181 0.91663 0.91434 0.92460 0.93164 0.92728 0.93306 0.95690 0.92455 0.90050 0.94023 0.90020 0.91382 0.91366 0.93929 0.94704 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.82 8.71 71.98 0.63 -4.20 16 2 C -0.23 -11.44 2.08 29.85 0.06 -11.38 16 3 H 0.00 -0.04 7.19 -2.39 -0.02 -0.06 16 4 C -0.53 -29.40 8.58 25.60 0.22 -29.18 16 5 H 0.06 3.15 7.71 -2.91 -0.02 3.13 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -52.08 11.32 21.45 0.24 -51.84 16 8 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 9 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 12 S 1.24 49.45 12.10 -56.49 -0.68 48.77 16 13 O -0.93 -49.43 18.13 -148.98 -2.70 -52.13 16 14 C -0.40 -12.05 1.97 30.59 0.06 -11.99 16 15 H 0.15 3.59 7.19 -2.39 -0.02 3.58 16 16 C -0.11 -3.96 4.94 30.59 0.15 -3.81 16 17 C -0.11 -2.83 5.92 30.60 0.18 -2.65 16 18 C -0.11 -2.53 5.20 30.60 0.16 -2.37 16 19 C -0.08 -1.68 2.72 -10.81 -0.03 -1.71 16 20 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.15 -2.45 9.19 71.98 0.66 -1.79 16 22 C -0.09 -2.36 4.48 30.58 0.14 -2.22 16 23 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.06 2.83 6.07 -2.39 -0.01 2.81 16 25 H 0.05 1.73 6.29 -2.39 -0.02 1.71 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.05 1.89 6.29 -2.39 -0.02 1.88 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -72.96 298.24 2.58 -70.38 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.02 Total: 8.90 kcal Atomic # 6 Polarization: -72.27 SS G_CDS: 2.68 Total: -69.59 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.24 Total: -51.84 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -2.70 Total: -52.13 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 49.45 SS G_CDS: -0.68 Total: 48.77 kcal Total: -72.96 2.58 -70.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.945 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds