Wall clock time and date at job start Mon Mar 30 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47248 * 2 1 4 4 C 1.50704 * 109.46879 * 119.99937 * 2 1 3 5 5 H 1.08001 * 119.99838 * 120.00315 * 4 2 1 6 6 C 1.37877 * 119.99975 * 299.99667 * 4 2 1 7 7 N 1.31513 * 120.00082 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99791 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47175 * 90.00161 * 8 6 4 10 10 H 1.48502 * 109.46990 * 209.99539 * 8 6 4 11 11 H 1.48498 * 109.47427 * 329.99843 * 8 6 4 12 12 S 1.81404 * 109.47216 * 239.99681 * 2 1 3 13 13 O 1.42094 * 109.46888 * 299.87883 * 12 2 1 14 14 C 1.81395 * 102.99869 * 183.48734 * 12 2 1 15 15 H 1.08999 * 109.47408 * 63.85242 * 14 12 2 16 16 C 1.53006 * 109.47245 * 303.84937 * 14 12 2 17 17 C 1.53000 * 109.46807 * 179.97438 * 16 14 12 18 18 C 1.52995 * 109.46899 * 60.01136 * 17 16 14 19 19 C 1.53007 * 109.46836 * 299.99041 * 18 17 16 20 20 H 1.09003 * 109.47046 * 180.02562 * 19 18 17 21 21 C 1.52988 * 109.47209 * 300.00194 * 19 18 17 22 22 C 1.52997 * 109.47058 * 60.00537 * 19 18 17 23 23 H 1.08995 * 109.47442 * 186.09587 * 1 2 3 24 24 H 1.09000 * 109.47300 * 306.10298 * 1 2 3 25 25 H 1.09001 * 109.47006 * 66.09846 * 1 2 3 26 26 H 0.96995 * 120.00090 * 180.02562 * 7 6 4 27 27 H 1.08990 * 109.47295 * 300.00218 * 16 14 12 28 28 H 1.09003 * 109.46674 * 60.00402 * 16 14 12 29 29 H 1.09004 * 109.46635 * 180.02562 * 17 16 14 30 30 H 1.08990 * 109.47585 * 300.00303 * 17 16 14 31 31 H 1.09007 * 109.47224 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.48020 * 59.99145 * 18 17 16 33 33 H 1.09004 * 109.47286 * 179.97438 * 21 19 18 34 34 H 1.09003 * 109.47107 * 60.00048 * 21 19 18 35 35 H 1.09001 * 109.47617 * 300.00091 * 21 19 18 36 36 H 1.09002 * 109.47127 * 59.99565 * 22 19 18 37 37 H 1.08993 * 109.47482 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6248 1.2791 2.6540 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9067 11 1 0.8471 2.1765 1.4919 12 16 2.1347 -0.8552 -1.4811 13 8 1.6633 -2.1957 -1.4796 14 6 3.9340 -0.8466 -1.2512 15 1 4.1903 -1.4320 -0.3682 16 6 4.4177 0.5932 -1.0667 17 6 5.9353 0.6003 -0.8721 18 6 6.6099 -0.0105 -2.1019 19 6 6.1262 -1.4503 -2.2865 20 1 6.6072 -1.8857 -3.1625 21 6 6.4855 -2.2719 -1.0470 22 6 4.6087 -1.4576 -2.4810 23 1 -0.3634 -1.0218 0.1091 24 1 -0.3634 0.6055 0.8303 25 1 -0.3633 0.4164 -0.9395 26 1 1.9033 -0.5277 4.4375 27 1 4.1615 1.1786 -1.9496 28 1 3.9374 1.0283 -0.1902 29 1 6.2798 1.6260 -0.7402 30 1 6.1912 0.0150 0.0110 31 1 7.6912 -0.0051 -1.9636 32 1 6.3540 0.5748 -2.9852 33 1 6.1405 -3.2975 -1.1783 34 1 6.0048 -1.8367 -0.1708 35 1 7.5666 -2.2668 -0.9084 36 1 4.3528 -0.8722 -3.3642 37 1 4.2642 -2.4832 -2.6130 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:15 Heat of formation + Delta-G solvation = -63.963578 kcal Electronic energy + Delta-G solvation = -16848.137685 eV Core-core repulsion = 14330.146827 eV Total energy + Delta-G solvation = -2517.990859 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.59455 -34.63853 -34.05095 -31.63209 -31.10308 -30.49493 -26.54591 -25.23678 -22.53113 -21.90848 -21.22061 -18.36857 -16.79040 -16.65706 -15.82722 -14.92859 -14.57635 -14.15578 -13.84881 -13.48512 -13.37422 -12.97870 -12.71022 -12.37241 -12.20124 -11.91503 -11.55149 -11.39965 -11.27921 -11.00840 -10.87294 -10.77092 -10.74598 -10.37978 -10.17655 -9.85303 -9.76053 -9.64068 -9.32278 -8.69173 -8.55186 -7.20602 -6.15646 -4.19692 2.62870 3.22056 3.29128 3.33742 3.63787 4.33503 4.72296 4.95227 5.02312 5.11912 5.18755 5.51579 5.56172 5.62887 5.70813 5.81805 5.90463 5.98961 6.10064 6.10619 6.18654 6.21890 6.24973 6.26568 6.38051 6.45747 6.51285 6.52305 6.62003 6.69802 6.82411 6.89645 7.14969 7.53586 8.23687 8.80787 9.43764 10.96185 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.026510 B = 0.008800 C = 0.007873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.933968 B = 3180.998589 C = 3555.624423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.282 4.282 3 H 0.078 0.922 4 C -0.514 4.514 5 H 0.072 0.928 6 C 0.077 3.923 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.298 1.298 11 H -0.262 1.262 12 S 1.206 4.794 13 O -0.864 6.864 14 C -0.396 4.396 15 H 0.103 0.897 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.084 4.084 20 H 0.063 0.937 21 C -0.153 4.153 22 C -0.088 4.088 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 6.196 -12.826 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.403 4.403 3 H 0.096 0.904 4 C -0.552 4.552 5 H 0.090 0.910 6 C -0.126 4.126 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.226 1.226 11 H -0.187 1.187 12 S 1.409 4.591 13 O -0.860 6.860 14 C -0.513 4.513 15 H 0.121 0.879 16 C -0.128 4.128 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.104 4.104 20 H 0.081 0.919 21 C -0.210 4.210 22 C -0.126 4.126 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.563 5.762 -13.394 15.606 hybrid contribution 0.012 -0.382 2.430 2.460 sum 5.575 5.380 -10.964 13.425 Atomic orbital electron populations 1.21817 0.96322 1.01796 0.99203 1.25239 0.98453 1.05087 1.11472 0.90440 1.20614 1.33020 1.13117 0.88405 0.91002 1.25051 0.95218 0.96691 0.95683 1.69906 1.45046 1.40178 0.98028 0.86740 0.80612 0.83434 0.76886 1.20675 1.22552 1.18700 1.69209 0.85916 0.98072 1.05917 1.93018 1.73958 1.35715 1.83279 1.27302 1.18779 1.01723 1.03483 0.87908 1.21181 0.95572 0.93634 1.02402 1.21538 0.95806 1.00047 0.98204 1.21543 0.99083 0.95660 0.98534 1.21027 0.95682 0.95746 0.97932 0.91860 1.21954 1.00452 0.99695 0.98942 1.21218 0.94704 1.00431 0.96286 0.92342 0.93598 0.94244 0.92528 0.91706 0.90177 0.92451 0.91666 0.92769 0.92151 0.93185 0.91358 0.93363 0.91527 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.59 37.16 0.32 -2.53 16 2 C -0.28 -6.24 1.75 -27.88 -0.05 -6.29 16 3 H 0.08 1.56 6.17 -51.93 -0.32 1.24 16 4 C -0.51 -14.26 8.65 -34.44 -0.30 -14.56 16 5 H 0.07 2.25 7.10 -52.49 -0.37 1.88 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -27.53 13.96 55.43 0.77 -26.76 16 8 Si 0.89 21.66 24.31 -169.99 -4.13 17.53 16 9 H -0.28 -6.75 6.93 56.52 0.39 -6.36 16 10 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 11 H -0.26 -5.79 6.53 56.52 0.37 -5.42 16 12 S 1.21 22.56 12.08 -107.50 -1.30 21.26 16 13 O -0.86 -21.63 18.13 -35.23 -0.64 -22.27 16 14 C -0.40 -6.75 1.99 -26.72 -0.05 -6.80 16 15 H 0.10 2.15 5.52 -51.92 -0.29 1.86 16 16 C -0.09 -1.31 4.99 -26.73 -0.13 -1.44 16 17 C -0.12 -1.58 5.65 -26.73 -0.15 -1.73 16 18 C -0.11 -1.30 5.45 -26.73 -0.15 -1.44 16 19 C -0.08 -1.09 3.19 -90.62 -0.29 -1.38 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 21 C -0.15 -2.21 8.50 37.15 0.32 -1.89 16 22 C -0.09 -1.27 4.74 -26.73 -0.13 -1.39 16 23 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 24 H 0.05 1.01 3.46 -51.93 -0.18 0.83 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.33 6.63 -51.93 -0.34 0.98 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.13 4.81 -51.93 -0.25 0.88 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 285.97 15.07 4.31 4.31 Total: -1.00 -34.86 285.97 -7.61 -42.47 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.92 Total: 0.81 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: -0.71 Total: -37.35 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.64 Total: -22.27 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.13 Total: 17.53 kcal Atomic # 16 Polarization: 22.56 SS G_CDS: -1.30 Total: 21.26 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.86 -7.61 -42.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.492 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds