Wall clock time and date at job start Mon Mar 30 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47354 * 2 1 4 4 H 1.09005 * 109.46761 * 54.17190 * 3 2 1 5 5 C 1.50698 * 109.47412 * 174.16985 * 3 2 1 6 6 H 1.08005 * 119.99800 * 120.00456 * 5 3 2 7 7 C 1.37875 * 120.00451 * 300.00355 * 5 3 2 8 8 N 1.31515 * 119.99748 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00364 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46531 * 60.00337 * 9 7 5 11 11 H 1.48497 * 109.47067 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47481 * 300.00694 * 9 7 5 13 13 S 1.81400 * 109.47543 * 294.17471 * 3 2 1 14 14 O 1.42101 * 109.46865 * 68.84244 * 13 3 2 15 15 C 1.81396 * 103.00257 * 185.23068 * 13 3 2 16 16 C 1.52997 * 109.47162 * 304.79596 * 15 13 3 17 17 C 1.53001 * 109.47256 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46836 * 60.00311 * 17 16 15 19 19 C 1.53006 * 109.47004 * 299.99975 * 18 17 16 20 20 C 1.52997 * 109.46981 * 60.00209 * 19 18 17 21 21 H 1.09000 * 109.46680 * 298.37278 * 1 2 3 22 22 H 1.09004 * 109.47260 * 178.37427 * 1 2 3 23 23 H 1.08996 * 109.47209 * 58.37321 * 1 2 3 24 24 H 1.08993 * 109.47589 * 120.00679 * 2 1 3 25 25 H 1.09008 * 109.47035 * 240.00311 * 2 1 3 26 26 H 0.96998 * 120.00210 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.47156 * 64.80037 * 15 13 3 28 28 H 1.08996 * 109.47444 * 300.00264 * 16 15 13 29 29 H 1.09006 * 109.46737 * 60.00261 * 16 15 13 30 30 H 1.08996 * 109.47323 * 300.00599 * 17 16 15 31 31 H 1.08996 * 109.47426 * 180.02562 * 17 16 15 32 32 H 1.08997 * 109.47367 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.47688 * 59.99853 * 18 17 16 34 34 H 1.08996 * 109.47337 * 299.99823 * 19 18 17 35 35 H 1.09006 * 109.46797 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.47170 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.47640 * 60.00180 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5940 1.9855 0.8333 5 6 3.5401 1.4449 0.1443 6 1 4.1559 1.8858 -0.6256 7 6 4.1264 0.8843 1.2592 8 7 3.3765 0.3470 2.1965 9 14 5.9858 0.8868 1.4377 10 1 6.4812 2.2868 1.4375 11 1 6.3613 0.2296 2.7153 12 1 6.5931 0.1467 0.3026 13 16 1.5814 2.2461 -1.5602 14 8 0.1727 2.4281 -1.6030 15 6 2.3965 3.8623 -1.4419 16 6 1.9580 4.5616 -0.1537 17 6 2.6460 5.9245 -0.0535 18 6 2.2550 6.7828 -1.2582 19 6 2.6936 6.0835 -2.5465 20 6 2.0055 4.7206 -2.6466 21 1 -0.3633 0.4884 0.9042 22 1 -0.3634 -1.0273 -0.0292 23 1 -0.3633 0.5389 -0.8750 24 1 1.8934 -0.5139 0.8898 25 1 1.8933 -0.5138 -0.8901 26 1 3.7890 -0.0477 2.9807 27 1 3.4776 3.7239 -1.4304 28 1 0.8769 4.6999 -0.1652 29 1 2.2369 3.9502 0.7046 30 1 3.7270 5.7858 -0.0418 31 1 2.3340 6.4225 0.8644 32 1 2.7455 7.7536 -1.1872 33 1 1.1739 6.9216 -1.2701 34 1 3.7746 5.9448 -2.5348 35 1 2.4146 6.6948 -3.4048 36 1 2.3176 4.2226 -3.5646 37 1 0.9244 4.8593 -2.6584 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:30 Heat of formation + Delta-G solvation = -92.350031 kcal Electronic energy + Delta-G solvation = -16766.873671 eV Core-core repulsion = 14247.651883 eV Total energy + Delta-G solvation = -2519.221788 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.09127 -36.54724 -36.35172 -33.46867 -31.79818 -31.64555 -29.28075 -25.16723 -23.65930 -23.54455 -22.05433 -20.66823 -18.64559 -17.93860 -17.22700 -16.55475 -15.95883 -15.40192 -15.18070 -15.03503 -14.83256 -14.49496 -13.86878 -13.78483 -13.36608 -13.20789 -13.11982 -12.98961 -12.69407 -12.58290 -12.41006 -12.07819 -11.97800 -11.94255 -11.64088 -11.51477 -11.33763 -11.03116 -11.00398 -10.47161 -10.00204 -8.73667 -8.03010 -6.22022 1.09268 1.52474 1.53081 1.59233 2.14103 2.50064 3.22747 3.24890 3.79277 3.81955 4.05581 4.33177 4.35342 4.39848 4.52409 4.53374 4.59823 4.66455 4.69008 4.74929 4.93363 4.98901 5.10984 5.19724 5.22746 5.24010 5.26050 5.29232 5.34939 5.38658 5.55307 5.59169 5.76431 5.91978 6.24265 6.88385 7.46973 9.01212 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.010185 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.963855 B = 2748.598020 C = 3694.654129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.102 4.102 3 C -0.221 4.221 4 H -0.001 1.001 5 C -0.505 4.505 6 H 0.093 0.907 7 C 0.018 3.982 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.299 1.299 12 H -0.256 1.256 13 S 1.227 4.773 14 O -0.924 6.924 15 C -0.382 4.382 16 C -0.108 4.108 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.109 4.109 20 C -0.097 4.097 21 H 0.019 0.981 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.258 0.742 27 H 0.137 0.863 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 7.338 -9.823 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.141 4.141 3 C -0.342 4.342 4 H 0.018 0.982 5 C -0.544 4.544 6 H 0.111 0.889 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.226 1.226 12 H -0.180 1.180 13 S 1.434 4.566 14 O -0.919 6.919 15 C -0.501 4.501 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.136 4.136 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.826 6.883 -10.430 12.812 hybrid contribution -0.283 0.777 2.954 3.068 sum 2.543 7.660 -7.476 11.002 Atomic orbital electron populations 1.22068 0.98153 1.01116 1.00671 1.21259 0.92461 0.97394 1.02999 1.24734 1.01800 1.00023 1.07622 0.98226 1.20947 0.88961 1.38345 1.06102 0.88940 1.25782 1.02248 0.94710 0.95496 1.70060 1.36842 1.39160 1.09807 0.85666 0.80346 0.78686 0.77399 1.19333 1.22585 1.18003 1.68866 0.89197 0.93502 1.05065 1.92848 1.29980 1.84701 1.84416 1.27296 1.10765 1.12948 0.99066 1.21438 0.98146 0.98201 0.96841 1.21485 1.00703 0.94257 0.98524 1.21547 1.00470 0.98783 0.94704 1.21507 1.01050 0.94774 0.97407 1.21304 0.99543 0.96455 0.96252 0.96164 0.91885 0.92209 0.90789 0.91642 0.93313 0.84472 0.95325 0.93617 0.91064 0.92712 0.90167 0.93464 0.90387 0.90087 0.88619 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.25 9.65 71.98 0.69 -6.56 16 2 C -0.10 -4.78 5.24 30.59 0.16 -4.62 16 3 C -0.22 -10.55 1.53 29.85 0.05 -10.51 16 4 H 0.00 -0.03 7.20 -2.39 -0.02 -0.05 16 5 C -0.50 -24.03 8.01 25.60 0.21 -23.82 16 6 H 0.09 3.84 6.74 -2.91 -0.02 3.82 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.92 -51.38 11.29 21.45 0.24 -51.14 16 9 Si 0.95 39.64 29.54 68.60 2.03 41.67 16 10 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 13 S 1.23 47.31 11.81 -56.49 -0.67 46.64 16 14 O -0.92 -44.07 15.80 -148.98 -2.35 -46.43 16 15 C -0.38 -12.67 2.21 30.59 0.07 -12.60 16 16 C -0.11 -4.06 4.97 30.59 0.15 -3.91 16 17 C -0.11 -3.30 5.92 30.59 0.18 -3.12 16 18 C -0.12 -2.86 5.92 30.60 0.18 -2.68 16 19 C -0.11 -2.39 5.92 30.60 0.18 -2.21 16 20 C -0.10 -2.63 5.20 30.59 0.16 -2.47 16 21 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 23 H 0.06 2.70 5.52 -2.39 -0.01 2.69 16 24 H 0.07 3.94 5.93 -2.39 -0.01 3.92 16 25 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.14 4.15 7.16 -2.39 -0.02 4.13 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 2.01 6.60 -2.38 -0.02 2.00 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -65.19 294.81 2.74 -62.45 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.02 Total: 17.96 kcal Atomic # 6 Polarization: -73.63 SS G_CDS: 2.48 Total: -71.15 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.24 Total: -51.14 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -2.35 Total: -46.43 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 16 Polarization: 47.31 SS G_CDS: -0.67 Total: 46.64 kcal Total: -65.19 2.74 -62.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.903 kcal (2) G-P(sol) polarization free energy of solvation -65.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds