Wall clock time and date at job start Mon Mar 30 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08994 * 109.47457 * 54.46090 * 3 2 1 5 5 C 1.50702 * 109.47193 * 174.45764 * 3 2 1 6 6 H 1.08006 * 119.99743 * 119.99975 * 5 3 2 7 7 C 1.37876 * 120.00435 * 299.99985 * 5 3 2 8 8 N 1.31520 * 119.99765 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00276 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47429 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47200 * 120.00243 * 9 7 5 12 12 H 1.48506 * 109.47153 * 240.00214 * 9 7 5 13 13 S 1.81400 * 109.47369 * 294.45703 * 3 2 1 14 14 O 1.42098 * 109.47271 * 299.16300 * 13 3 2 15 15 C 1.81396 * 103.00247 * 182.77103 * 13 3 2 16 16 C 1.52997 * 109.47162 * 303.82126 * 15 13 3 17 17 C 1.53001 * 109.47256 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46836 * 60.00311 * 17 16 15 19 19 C 1.53006 * 109.47004 * 299.99975 * 18 17 16 20 20 C 1.52997 * 109.46981 * 60.00209 * 19 18 17 21 21 H 1.08999 * 109.46532 * 295.31592 * 1 2 3 22 22 H 1.09001 * 109.46808 * 175.32383 * 1 2 3 23 23 H 1.08992 * 109.47410 * 55.31785 * 1 2 3 24 24 H 1.09003 * 109.47438 * 120.00506 * 2 1 3 25 25 H 1.09008 * 109.47055 * 240.00177 * 2 1 3 26 26 H 0.96995 * 120.00413 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.47156 * 63.82566 * 15 13 3 28 28 H 1.08996 * 109.47444 * 300.00264 * 16 15 13 29 29 H 1.09006 * 109.46737 * 60.00261 * 16 15 13 30 30 H 1.08996 * 109.47323 * 300.00599 * 17 16 15 31 31 H 1.08996 * 109.47426 * 180.02562 * 17 16 15 32 32 H 1.08997 * 109.47367 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.47688 * 59.99853 * 18 17 16 34 34 H 1.08996 * 109.47337 * 299.99823 * 19 18 17 35 35 H 1.09006 * 109.46797 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.47170 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.47386 * 59.99692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 0.8362 5 6 3.5407 1.4447 0.1372 6 1 4.1529 1.8868 -0.6349 7 6 4.1323 0.8823 1.2484 8 7 3.3869 0.3434 2.1884 9 14 5.9925 0.8844 1.4181 10 1 6.5970 1.5448 0.2333 11 1 6.3766 1.6240 2.6473 12 1 6.4830 -0.5144 1.5084 13 16 1.5740 2.2486 -1.5568 14 8 2.1662 1.5539 -2.6457 15 6 2.3270 3.8921 -1.4067 16 6 1.8259 4.5679 -0.1288 17 6 2.4615 5.9538 -0.0019 18 6 2.0759 6.8046 -1.2137 19 6 2.5771 6.1287 -2.4916 20 6 1.9414 4.7428 -2.6185 21 1 -0.3632 0.4394 0.9290 22 1 -0.3633 -1.0243 -0.0838 23 1 -0.3634 0.5847 -0.8450 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.8029 -0.0526 2.9700 27 1 3.4115 3.7922 -1.3636 28 1 0.7414 4.6677 -0.1719 29 1 2.1010 3.9620 0.7345 30 1 3.5460 5.8536 0.0414 31 1 2.1048 6.4352 0.9087 32 1 2.5291 7.7918 -1.1235 33 1 0.9914 6.9049 -1.2571 34 1 3.6615 6.0285 -2.4483 35 1 2.3019 6.7347 -3.3549 36 1 2.2981 4.2615 -3.5291 37 1 0.8569 4.8431 -2.6617 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:33 Heat of formation + Delta-G solvation = -97.728924 kcal Electronic energy + Delta-G solvation = -16718.416928 eV Core-core repulsion = 14198.961894 eV Total energy + Delta-G solvation = -2519.455034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.00585 -36.62220 -36.33850 -33.57326 -31.70507 -31.54809 -29.36361 -25.21534 -23.60252 -23.42651 -21.99357 -20.66139 -18.64212 -18.10017 -17.22788 -16.64799 -15.90431 -15.34674 -15.25472 -14.93788 -14.86368 -14.47142 -13.92436 -13.87632 -13.39281 -13.22462 -13.03364 -12.96094 -12.89335 -12.58115 -12.38289 -12.19172 -11.95440 -11.84229 -11.63337 -11.53627 -11.26785 -11.11535 -10.89879 -10.57997 -10.10202 -8.91750 -8.14881 -6.37191 1.13060 1.22933 1.27039 1.35864 2.11679 2.31603 3.01263 3.22467 3.85190 3.91338 4.14744 4.35484 4.46423 4.53996 4.60642 4.62713 4.67952 4.73726 4.75081 4.83547 4.99619 5.07962 5.21049 5.24273 5.29883 5.32382 5.36047 5.38465 5.43425 5.46639 5.56278 5.65193 5.74207 5.79387 6.20292 6.69566 7.28541 8.80573 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.009811 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.128524 B = 2853.133622 C = 3575.179729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.234 4.234 4 H 0.087 0.913 5 C -0.533 4.533 6 H 0.024 0.976 7 C 0.035 3.965 8 N -0.892 5.892 9 Si 0.931 3.069 10 H -0.287 1.287 11 H -0.265 1.265 12 H -0.278 1.278 13 S 1.241 4.759 14 O -0.935 6.935 15 C -0.386 4.386 16 C -0.092 4.092 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.096 4.096 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.265 0.735 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 11.767 -2.612 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.354 4.354 4 H 0.105 0.895 5 C -0.571 4.571 6 H 0.042 0.958 7 C -0.168 4.168 8 N -0.530 5.530 9 Si 0.758 3.242 10 H -0.212 1.212 11 H -0.190 1.190 12 H -0.204 1.204 13 S 1.448 4.552 14 O -0.931 6.931 15 C -0.505 4.505 16 C -0.130 4.130 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.134 4.134 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.024 0.976 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.920 11.264 -3.231 15.354 hybrid contribution 4.149 -0.819 0.411 4.249 sum -5.771 10.445 -2.821 12.262 Atomic orbital electron populations 1.21899 0.94142 1.02026 1.02535 1.21233 0.95877 0.97081 1.00386 1.24840 0.99400 1.01261 1.09912 0.89511 1.21009 0.91864 1.39445 1.04814 0.95764 1.25449 1.01066 0.94637 0.95609 1.69917 1.35683 1.38009 1.09352 0.85919 0.82316 0.78031 0.77941 1.21204 1.19027 1.20406 1.68187 1.17002 0.86444 0.83609 1.92872 1.81369 1.71507 1.47380 1.27223 1.06509 1.14222 1.02559 1.21275 1.02158 0.95922 0.93627 1.21529 0.99287 0.95361 0.99351 1.21522 1.02444 0.97925 0.92914 1.21522 0.99057 0.95219 0.99430 1.21300 1.02961 0.95297 0.93852 0.90994 0.92398 0.91722 0.90915 0.97567 0.92585 0.93363 0.87463 0.92580 0.94893 0.90160 0.91165 0.89370 0.94612 0.89858 0.94318 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.82 71.98 0.71 -4.39 16 2 C -0.11 -5.04 5.24 30.59 0.16 -4.88 16 3 C -0.23 -11.12 1.61 29.85 0.05 -11.07 16 4 H 0.09 3.96 7.07 -2.39 -0.02 3.94 16 5 C -0.53 -30.20 8.07 25.60 0.21 -29.99 16 6 H 0.02 1.47 6.92 -2.91 -0.02 1.45 16 7 C 0.03 1.94 5.29 84.65 0.45 2.39 16 8 N -0.89 -49.91 11.29 21.45 0.24 -49.66 16 9 Si 0.93 45.45 29.54 68.60 2.03 47.47 16 10 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 S 1.24 49.47 10.84 -56.49 -0.61 48.85 16 14 O -0.94 -49.93 18.13 -148.98 -2.70 -52.63 16 15 C -0.39 -13.62 2.28 30.59 0.07 -13.55 16 16 C -0.09 -2.64 4.99 30.59 0.15 -2.49 16 17 C -0.12 -2.95 5.92 30.59 0.18 -2.76 16 18 C -0.11 -2.22 5.92 30.60 0.18 -2.03 16 19 C -0.11 -2.71 5.92 30.60 0.18 -2.52 16 20 C -0.10 -2.69 5.21 30.59 0.16 -2.53 16 21 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.06 1.87 7.01 -2.39 -0.02 1.85 16 24 H 0.07 3.87 5.94 -2.39 -0.01 3.85 16 25 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 26 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 27 H 0.05 2.12 7.28 -2.39 -0.02 2.11 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.94 6.62 -2.38 -0.02 1.92 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -74.20 298.24 2.47 -71.74 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.02 Total: 8.08 kcal Atomic # 6 Polarization: -76.34 SS G_CDS: 2.49 Total: -73.84 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.24 Total: -49.66 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -2.70 Total: -52.63 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 49.47 SS G_CDS: -0.61 Total: 48.85 kcal Total: -74.20 2.47 -71.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.991 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds