Wall clock time and date at job start Mon Mar 30 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46770 * 2 1 4 4 H 1.08993 * 109.47217 * 304.95684 * 3 2 1 5 5 C 1.50704 * 109.46816 * 184.96072 * 3 2 1 6 6 H 1.07995 * 119.99772 * 239.99677 * 5 3 2 7 7 C 1.37882 * 119.99964 * 60.00141 * 5 3 2 8 8 N 1.31511 * 120.00272 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99596 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46899 * 90.00481 * 9 7 5 11 11 H 1.48509 * 109.46784 * 209.99908 * 9 7 5 12 12 H 1.48498 * 109.47273 * 329.99817 * 9 7 5 13 13 S 1.81397 * 109.47227 * 64.96110 * 3 2 1 14 14 O 1.42096 * 109.46786 * 290.77905 * 13 3 2 15 15 C 1.81396 * 103.00086 * 174.39050 * 13 3 2 16 16 C 1.53002 * 109.47291 * 57.38863 * 15 13 3 17 17 C 1.52998 * 109.47534 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46798 * 300.00176 * 17 16 15 19 19 C 1.53001 * 109.47500 * 60.00253 * 18 17 16 20 20 C 1.52996 * 109.47165 * 177.38701 * 15 13 3 21 21 H 1.09000 * 109.47005 * 293.63139 * 1 2 3 22 22 H 1.08996 * 109.47034 * 53.63884 * 1 2 3 23 23 H 1.09001 * 109.46505 * 173.64153 * 1 2 3 24 24 H 1.08998 * 109.47271 * 240.00492 * 2 1 3 25 25 H 1.08994 * 109.47489 * 120.00102 * 2 1 3 26 26 H 0.96994 * 120.00069 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47345 * 297.39448 * 15 13 3 28 28 H 1.09004 * 109.47131 * 300.00484 * 16 15 13 29 29 H 1.09007 * 109.46678 * 59.99511 * 16 15 13 30 30 H 1.08996 * 109.46894 * 180.02562 * 17 16 15 31 31 H 1.08998 * 109.46713 * 60.00262 * 17 16 15 32 32 H 1.08998 * 109.47559 * 299.99568 * 18 17 16 33 33 H 1.09004 * 109.46652 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47597 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.47274 * 59.99140 * 19 18 17 36 36 H 1.08997 * 109.47598 * 300.00591 * 20 15 13 37 37 H 1.09005 * 109.46753 * 60.00436 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6059 1.9814 -0.8422 5 6 3.5420 1.4444 -0.1229 6 1 4.1467 1.8892 0.6535 7 6 4.1441 0.8782 -1.2265 8 7 3.4077 0.3362 -2.1718 9 14 6.0059 0.8811 -1.3791 10 1 6.5553 -0.3502 -0.7569 11 1 6.3848 0.9219 -2.8144 12 1 6.5574 2.0738 -0.6874 13 16 1.5590 2.2539 1.5495 14 8 0.1509 2.4438 1.5674 15 6 2.3851 3.8652 1.4399 16 6 1.9308 4.5859 0.1691 17 6 2.6270 5.9452 0.0769 18 6 2.2621 6.7889 1.2999 19 6 2.7165 6.0683 2.5708 20 6 2.0208 4.7093 2.6628 21 1 -0.3633 0.4119 0.9415 22 1 -0.3633 0.6093 -0.8275 23 1 -0.3632 -1.0214 -0.1138 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8313 -0.0624 -2.9480 27 1 3.4647 3.7186 1.4081 28 1 2.1903 3.9845 -0.7022 29 1 0.8511 4.7324 0.2008 30 1 2.3030 6.4587 -0.8282 31 1 3.7067 5.7989 0.0454 32 1 1.1825 6.9352 1.3315 33 1 2.7585 7.7572 1.2345 34 1 2.4562 6.6692 3.4421 35 1 3.7962 5.9220 2.5393 36 1 0.9412 4.8559 2.6946 37 1 2.3445 4.1958 3.5682 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:35 Heat of formation + Delta-G solvation = -75.896468 kcal Electronic energy + Delta-G solvation = -16759.289970 eV Core-core repulsion = 14240.781662 eV Total energy + Delta-G solvation = -2518.508308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.82778 -34.68931 -34.50669 -31.58492 -30.48339 -30.39498 -27.43420 -23.28819 -22.34737 -22.24559 -20.27859 -19.38497 -16.84401 -16.23214 -15.53339 -15.01074 -14.30860 -13.98750 -13.83756 -13.58978 -13.10674 -12.97851 -12.33330 -12.01088 -11.81686 -11.70152 -11.66931 -11.33955 -11.03211 -10.85967 -10.78525 -10.67230 -10.59636 -10.17667 -10.09897 -10.02656 -9.81125 -9.71521 -9.16547 -8.57698 -8.29053 -6.99962 -6.11403 -4.24723 2.70671 3.22803 3.30706 3.31508 3.81595 4.32234 4.87434 5.04470 5.09000 5.17091 5.21427 5.60353 5.64045 5.77338 5.86181 5.91327 5.95894 6.08897 6.20885 6.26622 6.32295 6.42899 6.44076 6.49574 6.50966 6.57620 6.73320 6.84529 6.90535 7.06919 7.08971 7.46392 7.68324 7.81155 8.15492 8.77504 9.40844 10.92913 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.019716 B = 0.010167 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.855209 B = 2753.284440 C = 3699.400196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.210 4.210 4 H 0.047 0.953 5 C -0.507 4.507 6 H 0.069 0.931 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.271 1.271 13 S 1.171 4.829 14 O -0.883 6.883 15 C -0.388 4.388 16 C -0.108 4.108 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.112 4.112 20 C -0.095 4.095 21 H 0.056 0.944 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.103 0.897 25 H 0.043 0.957 26 H 0.262 0.738 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 5.995 7.535 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.139 4.139 3 C -0.331 4.331 4 H 0.065 0.935 5 C -0.546 4.546 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.196 1.196 13 S 1.377 4.623 14 O -0.878 6.878 15 C -0.504 4.504 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.133 4.133 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.121 0.879 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.841 5.574 8.126 9.890 hybrid contribution 0.382 1.103 -2.226 2.514 sum 1.223 6.677 5.900 8.993 Atomic orbital electron populations 1.22084 0.98782 0.99622 1.01752 1.21312 0.91757 0.97426 1.03445 1.24641 1.01931 0.99693 1.06883 0.93494 1.20562 0.88395 1.39310 1.06299 0.91268 1.24950 0.98124 0.94731 0.95466 1.69882 1.35105 1.37412 1.09317 0.86582 0.85344 0.78728 0.77363 1.20342 1.21349 1.19583 1.69509 0.90588 0.92673 1.09537 1.92945 1.26778 1.83035 1.85057 1.27336 1.10533 1.14324 0.98216 1.21502 0.99260 0.96293 0.97534 1.21483 1.00765 0.95975 0.96934 1.21522 1.00673 0.97940 0.95418 1.21476 1.00440 0.96115 0.97058 1.21197 1.00371 0.95250 0.96477 0.92540 0.93886 0.94437 0.87891 0.93787 0.92774 0.86137 0.90364 0.92857 0.92853 0.91843 0.92575 0.92740 0.92598 0.91877 0.92169 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 9.36 37.16 0.35 -3.24 16 2 C -0.10 -2.29 5.24 -26.73 -0.14 -2.43 16 3 C -0.21 -4.88 1.60 -27.88 -0.04 -4.93 16 4 H 0.05 1.25 7.25 -51.93 -0.38 0.87 16 5 C -0.51 -12.14 8.05 -34.44 -0.28 -12.42 16 6 H 0.07 1.52 6.68 -52.49 -0.35 1.17 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.74 11.29 55.43 0.63 -23.11 16 9 Si 0.89 19.57 29.54 -169.99 -5.02 14.54 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 S 1.17 22.91 11.76 -107.50 -1.26 21.64 16 14 O -0.88 -20.94 15.98 -35.23 -0.56 -21.50 16 15 C -0.39 -6.76 2.22 -26.73 -0.06 -6.82 16 16 C -0.11 -2.01 5.01 -26.73 -0.13 -2.15 16 17 C -0.11 -1.77 5.92 -26.73 -0.16 -1.92 16 18 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 19 C -0.11 -1.47 5.92 -26.75 -0.16 -1.63 16 20 C -0.09 -1.42 5.21 -26.76 -0.14 -1.56 16 21 H 0.06 1.23 6.04 -51.93 -0.31 0.92 16 22 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.12 2.04 7.05 -51.93 -0.37 1.68 16 28 H 0.08 1.65 6.73 -51.93 -0.35 1.30 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -29.32 295.35 -9.06 -38.38 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.27 Total: 2.75 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: -1.02 Total: -37.16 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.63 Total: -23.11 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.56 Total: -21.50 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 22.91 SS G_CDS: -1.26 Total: 21.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.32 -9.06 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.515 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds