Wall clock time and date at job start Mon Mar 30 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46770 * 2 1 4 4 H 1.08993 * 109.47217 * 304.95684 * 3 2 1 5 5 C 1.50704 * 109.46816 * 184.96072 * 3 2 1 6 6 H 1.07995 * 119.99772 * 239.99677 * 5 3 2 7 7 C 1.37882 * 119.99964 * 60.00141 * 5 3 2 8 8 N 1.31511 * 120.00272 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99596 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46899 * 90.00481 * 9 7 5 11 11 H 1.48509 * 109.46784 * 209.99908 * 9 7 5 12 12 H 1.48498 * 109.47273 * 329.99817 * 9 7 5 13 13 S 1.81397 * 109.47227 * 64.96110 * 3 2 1 14 14 O 1.42096 * 109.46786 * 290.77905 * 13 3 2 15 15 C 1.81396 * 103.00086 * 174.39050 * 13 3 2 16 16 C 1.53002 * 109.47291 * 57.38863 * 15 13 3 17 17 C 1.52998 * 109.47534 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46798 * 300.00176 * 17 16 15 19 19 C 1.53001 * 109.47500 * 60.00253 * 18 17 16 20 20 C 1.52996 * 109.47165 * 177.38701 * 15 13 3 21 21 H 1.09000 * 109.47005 * 293.63139 * 1 2 3 22 22 H 1.08996 * 109.47034 * 53.63884 * 1 2 3 23 23 H 1.09001 * 109.46505 * 173.64153 * 1 2 3 24 24 H 1.08998 * 109.47271 * 240.00492 * 2 1 3 25 25 H 1.08994 * 109.47489 * 120.00102 * 2 1 3 26 26 H 0.96994 * 120.00069 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47345 * 297.39448 * 15 13 3 28 28 H 1.09004 * 109.47131 * 300.00484 * 16 15 13 29 29 H 1.09007 * 109.46678 * 59.99511 * 16 15 13 30 30 H 1.08996 * 109.46894 * 180.02562 * 17 16 15 31 31 H 1.08998 * 109.46713 * 60.00262 * 17 16 15 32 32 H 1.08998 * 109.47559 * 299.99568 * 18 17 16 33 33 H 1.09004 * 109.46652 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47597 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.47274 * 59.99140 * 19 18 17 36 36 H 1.08997 * 109.47598 * 300.00591 * 20 15 13 37 37 H 1.09005 * 109.46753 * 60.00436 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6059 1.9814 -0.8422 5 6 3.5420 1.4444 -0.1229 6 1 4.1467 1.8892 0.6535 7 6 4.1441 0.8782 -1.2265 8 7 3.4077 0.3362 -2.1718 9 14 6.0059 0.8811 -1.3791 10 1 6.5553 -0.3502 -0.7569 11 1 6.3848 0.9219 -2.8144 12 1 6.5574 2.0738 -0.6874 13 16 1.5590 2.2539 1.5495 14 8 0.1509 2.4438 1.5674 15 6 2.3851 3.8652 1.4399 16 6 1.9308 4.5859 0.1691 17 6 2.6270 5.9452 0.0769 18 6 2.2621 6.7889 1.2999 19 6 2.7165 6.0683 2.5708 20 6 2.0208 4.7093 2.6628 21 1 -0.3633 0.4119 0.9415 22 1 -0.3633 0.6093 -0.8275 23 1 -0.3632 -1.0214 -0.1138 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8313 -0.0624 -2.9480 27 1 3.4647 3.7186 1.4081 28 1 2.1903 3.9845 -0.7022 29 1 0.8511 4.7324 0.2008 30 1 2.3030 6.4587 -0.8282 31 1 3.7067 5.7989 0.0454 32 1 1.1825 6.9352 1.3315 33 1 2.7585 7.7572 1.2345 34 1 2.4562 6.6692 3.4421 35 1 3.7962 5.9220 2.5393 36 1 0.9412 4.8559 2.6946 37 1 2.3445 4.1958 3.5682 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:35 Heat of formation + Delta-G solvation = -92.877543 kcal Electronic energy + Delta-G solvation = -16760.026324 eV Core-core repulsion = 14240.781662 eV Total energy + Delta-G solvation = -2519.244662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.09163 -36.53705 -36.34780 -33.47820 -31.79438 -31.64795 -29.29252 -25.17123 -23.65929 -23.54378 -22.06491 -20.66231 -18.64848 -17.93553 -17.21137 -16.55754 -15.95744 -15.38663 -15.18372 -15.02997 -14.84969 -14.51787 -13.85720 -13.77556 -13.39115 -13.21450 -13.12073 -13.00729 -12.73110 -12.57359 -12.34567 -12.07714 -11.98523 -11.94609 -11.64920 -11.52347 -11.33688 -11.03143 -11.00211 -10.48072 -10.01827 -8.73727 -8.03469 -6.22390 1.09432 1.50865 1.52365 1.60709 2.14403 2.49674 3.22891 3.25173 3.79355 3.81785 4.05568 4.33257 4.35410 4.39159 4.51506 4.52694 4.59846 4.66385 4.68256 4.74561 4.93391 4.98648 5.10524 5.19693 5.22508 5.22996 5.25274 5.29253 5.35056 5.38352 5.55400 5.59108 5.76119 5.91794 6.23715 6.88236 7.46618 9.00946 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.019716 B = 0.010167 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.855209 B = 2753.284440 C = 3699.400196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C -0.222 4.222 4 H -0.001 1.001 5 C -0.504 4.504 6 H 0.093 0.907 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.300 1.300 12 H -0.254 1.254 13 S 1.227 4.773 14 O -0.924 6.924 15 C -0.383 4.383 16 C -0.108 4.108 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.109 4.109 20 C -0.097 4.097 21 H 0.056 0.944 22 H 0.018 0.982 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.258 0.742 27 H 0.136 0.864 28 H 0.043 0.957 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 7.341 9.901 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.343 4.343 4 H 0.017 0.983 5 C -0.543 4.543 6 H 0.111 0.889 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.227 1.227 12 H -0.177 1.177 13 S 1.434 4.566 14 O -0.920 6.920 15 C -0.501 4.501 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.135 4.135 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.154 0.846 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.689 6.899 10.500 12.848 hybrid contribution -0.237 0.759 -2.962 3.067 sum 2.452 7.658 7.538 11.022 Atomic orbital electron populations 1.21989 0.98065 1.00651 1.00650 1.21266 0.92430 0.97373 1.03062 1.24759 1.01903 1.00068 1.07520 0.98288 1.20984 0.88877 1.38051 1.06403 0.88922 1.25786 1.02323 0.94739 0.95419 1.70063 1.36826 1.38976 1.09991 0.85606 0.80340 0.79491 0.76630 1.19599 1.22659 1.17733 1.68843 0.88663 0.93521 1.05582 1.92860 1.29649 1.84747 1.84718 1.27305 1.10806 1.12873 0.99158 1.21430 0.98196 0.98127 0.96835 1.21485 1.00675 0.94292 0.98517 1.21545 1.00539 0.98786 0.94628 1.21499 1.00933 0.94757 0.97574 1.21296 0.99667 0.96558 0.96005 0.92506 0.96306 0.91977 0.90794 0.91562 0.93311 0.84590 0.93859 0.95208 0.92664 0.91098 0.93405 0.90164 0.90031 0.90464 0.94013 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.94 9.36 71.98 0.67 -6.26 16 2 C -0.10 -4.78 5.24 30.60 0.16 -4.62 16 3 C -0.22 -10.60 1.60 29.85 0.05 -10.56 16 4 H 0.00 -0.07 7.25 -2.39 -0.02 -0.09 16 5 C -0.50 -24.04 8.05 25.60 0.21 -23.83 16 6 H 0.09 3.86 6.68 -2.91 -0.02 3.84 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -51.36 11.29 21.45 0.24 -51.12 16 9 Si 0.95 39.69 29.54 68.60 2.03 41.72 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.30 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 13 S 1.23 47.42 11.76 -56.49 -0.66 46.75 16 14 O -0.92 -44.18 15.98 -148.98 -2.38 -46.56 16 15 C -0.38 -12.73 2.22 30.59 0.07 -12.66 16 16 C -0.11 -4.05 5.01 30.59 0.15 -3.89 16 17 C -0.11 -3.30 5.92 30.59 0.18 -3.12 16 18 C -0.12 -2.85 5.92 30.59 0.18 -2.67 16 19 C -0.11 -2.39 5.92 30.58 0.18 -2.21 16 20 C -0.10 -2.61 5.21 30.58 0.16 -2.45 16 21 H 0.06 2.50 6.04 -2.39 -0.01 2.49 16 22 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.07 3.93 5.95 -2.39 -0.01 3.91 16 25 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 27 H 0.14 4.18 7.05 -2.39 -0.02 4.16 16 28 H 0.04 1.90 6.73 -2.38 -0.02 1.89 16 29 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -65.32 295.35 2.70 -62.62 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.02 Total: 17.52 kcal Atomic # 6 Polarization: -73.40 SS G_CDS: 2.46 Total: -70.94 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.24 Total: -51.12 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.38 Total: -46.56 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: 47.42 SS G_CDS: -0.66 Total: 46.75 kcal Total: -65.32 2.70 -62.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.259 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds