Wall clock time and date at job start Mon Mar 30 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46795 * 2 1 4 4 H 1.08997 * 109.47290 * 177.31509 * 3 2 1 5 5 C 1.50699 * 109.47296 * 57.31460 * 3 2 1 6 6 H 1.08000 * 120.00083 * 245.38769 * 5 3 2 7 7 C 1.37875 * 120.00088 * 65.38537 * 5 3 2 8 8 N 1.31515 * 120.00035 * 10.08086 * 7 5 3 9 9 Si 1.86794 * 120.00207 * 190.08288 * 7 5 3 10 10 H 1.48504 * 109.47288 * 270.00078 * 9 7 5 11 11 H 1.48500 * 109.47194 * 29.99964 * 9 7 5 12 12 H 1.48496 * 109.47577 * 150.00095 * 9 7 5 13 13 S 1.81402 * 109.46924 * 297.31249 * 3 2 1 14 14 O 1.42098 * 109.47044 * 187.28274 * 13 3 2 15 15 C 1.81399 * 103.00107 * 303.67599 * 13 3 2 16 16 C 1.52997 * 109.46820 * 185.05583 * 15 13 3 17 17 C 1.54270 * 110.03018 * 292.90377 * 16 15 13 18 18 C 1.54971 * 104.15966 * 217.13784 * 17 16 15 19 19 C 1.54890 * 102.77708 * 37.88898 * 18 17 16 20 20 C 1.53878 * 110.03173 * 175.68878 * 16 15 13 21 21 H 1.09005 * 109.46853 * 184.54794 * 1 2 3 22 22 H 1.08999 * 109.47248 * 304.54264 * 1 2 3 23 23 H 1.09003 * 109.47405 * 64.54663 * 1 2 3 24 24 H 1.08992 * 109.47557 * 240.00318 * 2 1 3 25 25 H 1.08998 * 109.47333 * 119.99091 * 2 1 3 26 26 H 0.97002 * 119.99982 * 356.63578 * 8 7 5 27 27 H 1.08998 * 109.46686 * 305.04920 * 15 13 3 28 28 H 1.08994 * 109.47241 * 65.05086 * 15 13 3 29 29 H 1.08996 * 110.02013 * 54.29464 * 16 15 13 30 30 H 1.08996 * 110.48750 * 335.78811 * 17 16 15 31 31 H 1.09004 * 110.48563 * 98.43406 * 17 16 15 32 32 H 1.08998 * 110.72331 * 279.57596 * 18 17 16 33 33 H 1.08994 * 110.92303 * 156.29784 * 18 17 16 34 34 H 1.08996 * 110.49111 * 203.40319 * 19 18 17 35 35 H 1.09001 * 110.59576 * 80.81200 * 19 18 17 36 36 H 1.09000 * 110.03215 * 238.56810 * 20 16 15 37 37 H 1.09003 * 110.03141 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1288 1.4431 0.0481 5 6 1.4839 2.1720 1.1958 6 1 0.7985 2.9947 1.0558 7 6 1.8503 1.7889 2.4686 8 7 2.8284 0.9265 2.6398 9 14 0.9575 2.4946 3.9498 10 1 1.6409 3.7357 4.3947 11 1 -0.4458 2.8081 3.5788 12 1 0.9675 1.5012 5.0535 13 16 1.5015 2.2742 -1.5196 14 8 2.1124 3.5546 -1.6008 15 6 2.1633 1.2044 -2.8266 16 6 1.8982 1.8432 -4.1914 17 6 0.3829 1.8622 -4.4805 18 6 0.2835 1.5792 -6.0009 19 6 1.4055 0.5361 -6.2292 20 6 2.5483 1.0007 -5.3029 21 1 -0.3633 -1.0245 0.0815 22 1 -0.3634 0.5827 0.8465 23 1 -0.3634 0.4417 -0.9279 24 1 1.8933 -0.5137 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 3.2595 0.5230 1.8702 27 1 3.2370 1.0807 -2.6859 28 1 1.6762 0.2305 -2.7804 29 1 2.2949 2.8582 -4.2117 30 1 -0.1235 1.0813 -3.9133 31 1 -0.0381 2.8398 -4.2454 32 1 0.4758 2.4853 -6.5753 33 1 -0.6903 1.1612 -6.2561 34 1 1.7298 0.5462 -7.2697 35 1 1.0661 -0.4603 -5.9460 36 1 3.2599 1.6071 -5.8632 37 1 3.0523 0.1366 -4.8700 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:39 Heat of formation + Delta-G solvation = -76.209724 kcal Electronic energy + Delta-G solvation = -16356.430374 eV Core-core repulsion = 13837.908482 eV Total energy + Delta-G solvation = -2518.521891 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.17904 -35.28965 -34.60838 -31.52382 -30.92962 -28.65465 -26.84494 -25.14417 -23.69094 -20.69188 -20.40737 -19.54107 -17.32641 -16.41032 -15.72384 -15.08823 -14.59652 -14.23220 -13.81216 -13.73640 -13.53424 -13.27183 -12.77954 -12.32960 -12.18162 -11.49732 -11.27125 -11.12319 -11.05746 -11.01173 -10.84168 -10.71539 -10.60155 -10.53715 -10.31148 -10.19461 -10.13422 -10.04798 -9.03566 -8.62706 -8.35832 -7.17401 -6.46369 -4.19146 2.46864 3.40771 3.42570 3.58274 3.72710 4.45601 4.63364 4.65577 4.70431 4.85053 5.27124 5.37631 5.43891 5.49842 5.64756 5.68186 5.73049 5.84455 5.92603 6.02005 6.03740 6.09338 6.12952 6.16718 6.20691 6.32521 6.33735 6.56478 6.59683 6.83743 6.95258 7.23723 7.26824 7.87521 8.27181 8.69874 9.52947 10.91537 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.043386 B = 0.006105 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.207437 B = 4584.972668 C = 4683.609988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.243 4.243 4 H 0.036 0.964 5 C -0.580 4.580 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.902 5.902 9 Si 1.068 2.932 10 H -0.288 1.288 11 H -0.283 1.283 12 H -0.282 1.282 13 S 1.208 4.792 14 O -0.870 6.870 15 C -0.450 4.450 16 C -0.069 4.069 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.119 4.119 21 H 0.037 0.963 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.067 0.933 26 H 0.272 0.728 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 -3.598 -13.526 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.364 4.364 4 H 0.054 0.946 5 C -0.619 4.619 6 H 0.076 0.924 7 C -0.175 4.175 8 N -0.536 5.536 9 Si 0.895 3.105 10 H -0.214 1.214 11 H -0.208 1.208 12 H -0.208 1.208 13 S 1.411 4.589 14 O -0.866 6.866 15 C -0.585 4.585 16 C -0.089 4.089 17 C -0.167 4.167 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.157 4.157 21 H 0.056 0.944 22 H 0.094 0.906 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.772 -2.734 -12.019 14.572 hybrid contribution 2.637 -0.277 -1.454 3.024 sum -5.135 -3.011 -13.473 14.729 Atomic orbital electron populations 1.21752 0.96080 1.00051 1.02263 1.21315 0.96174 0.96218 1.00179 1.24865 1.02095 1.00561 1.08890 0.94567 1.21187 1.31687 1.18574 0.90483 0.92448 1.25803 0.95248 0.95970 1.00450 1.70757 1.19713 1.28312 1.34867 0.83568 0.75695 0.76055 0.75145 1.21427 1.20826 1.20801 1.69777 1.18661 0.83276 0.87231 1.92986 1.79223 1.29632 1.84718 1.27933 1.08129 1.12479 1.09966 1.21329 0.95905 0.99067 0.92565 1.22604 0.95512 1.02428 0.96156 1.22490 0.98442 0.98817 0.96377 1.22352 0.95868 0.99007 0.98909 1.22257 0.97699 0.99508 0.96276 0.94432 0.90555 0.93668 0.94991 0.91425 0.91693 0.90762 0.87120 0.91067 0.90350 0.91152 0.91768 0.91543 0.92177 0.91610 0.92335 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.43 37.16 0.35 -2.16 16 2 C -0.10 -2.04 5.25 -26.73 -0.14 -2.18 16 3 C -0.24 -5.83 2.19 -27.88 -0.06 -5.89 16 4 H 0.04 0.99 7.48 -51.93 -0.39 0.60 16 5 C -0.58 -15.66 7.03 -34.44 -0.24 -15.90 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.03 0.89 5.21 -17.82 -0.09 0.79 16 8 N -0.90 -26.45 13.11 55.43 0.73 -25.72 16 9 Si 1.07 24.51 29.92 -169.99 -5.09 19.43 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 S 1.21 24.47 10.88 -107.50 -1.17 23.30 16 14 O -0.87 -22.93 18.08 -35.23 -0.64 -23.57 16 15 C -0.45 -7.38 4.32 37.16 0.16 -7.22 16 16 C -0.07 -1.01 2.92 -89.50 -0.26 -1.27 16 17 C -0.13 -1.55 5.87 -25.03 -0.15 -1.70 16 18 C -0.12 -1.25 6.91 -24.69 -0.17 -1.42 16 19 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 20 C -0.12 -1.47 6.46 -25.61 -0.17 -1.64 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.08 1.48 6.97 -51.93 -0.36 1.12 16 23 H 0.04 0.64 7.20 -51.93 -0.37 0.26 16 24 H 0.03 0.56 6.53 -51.93 -0.34 0.22 16 25 H 0.07 1.57 6.47 -51.93 -0.34 1.23 16 26 H 0.27 7.95 5.99 -40.82 -0.24 7.71 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.11 1.55 7.01 -51.93 -0.36 1.19 16 29 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 30 H 0.08 0.83 7.77 -51.93 -0.40 0.43 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 299.79 15.07 4.52 4.52 Total: -1.00 -33.55 299.79 -8.80 -42.36 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.21 Total: -0.30 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: -0.94 Total: -40.01 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.73 Total: -25.72 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.64 Total: -23.57 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.09 Total: 19.43 kcal Atomic # 16 Polarization: 24.47 SS G_CDS: -1.17 Total: 23.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.55 -8.80 -42.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.854 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds