Wall clock time and date at job start Mon Mar 30 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41991 * 126.05254 * 2 1 4 4 C 1.40479 * 126.87262 * 0.02562 * 3 2 1 5 5 H 1.08007 * 120.00172 * 326.72465 * 4 3 2 6 6 C 1.39516 * 120.00055 * 147.00330 * 4 3 2 7 7 N 1.31241 * 120.00103 * 339.86096 * 6 4 3 8 8 Si 1.86805 * 119.99948 * 159.85499 * 6 4 3 9 9 H 1.48504 * 109.46871 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47079 * 119.99822 * 8 6 4 11 11 H 1.48496 * 109.46905 * 240.00085 * 8 6 4 12 12 C 1.41733 * 106.25350 * 179.73347 * 3 2 1 13 13 C 1.39513 * 132.43897 * 180.23713 * 12 3 2 14 14 C 1.37969 * 119.25125 * 180.02562 * 13 12 3 15 15 C 1.40109 * 119.33141 * 0.02562 * 14 13 12 16 16 C 1.35266 * 120.34201 * 0.02562 * 15 14 13 17 17 N 1.36797 * 120.83830 * 359.97438 * 16 15 14 18 18 C 1.34494 * 126.04876 * 180.16170 * 2 1 3 19 19 C 1.50700 * 125.07490 * 0.02562 * 18 2 1 20 20 H 1.08994 * 109.47261 * 345.31890 * 19 18 2 21 21 C 1.52995 * 109.47033 * 105.32635 * 19 18 2 22 22 N 1.46901 * 109.46874 * 225.32350 * 19 18 2 23 23 H 1.09003 * 109.47372 * 90.01931 * 1 2 3 24 24 H 1.09001 * 109.47164 * 210.02080 * 1 2 3 25 25 H 1.09007 * 109.47105 * 330.02235 * 1 2 3 26 26 H 0.97003 * 120.00137 * 185.08437 * 7 6 4 27 27 H 1.08001 * 120.37226 * 359.97438 * 13 12 3 28 28 H 1.08002 * 120.33447 * 179.97438 * 14 13 12 29 29 H 1.08002 * 119.82639 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.57862 * 180.02562 * 16 15 14 31 31 H 1.08999 * 109.47065 * 299.99284 * 21 19 18 32 32 H 1.08999 * 109.47722 * 60.00000 * 21 19 18 33 33 H 1.09001 * 109.47152 * 180.02562 * 21 19 18 34 34 H 1.00899 * 111.00314 * 56.04895 * 22 19 18 35 35 H 1.00900 * 110.99955 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3426 1.1480 0.0000 4 6 1.9302 2.4908 0.0005 5 1 1.0239 2.7776 -0.5123 6 6 2.6943 3.4551 0.6585 7 7 3.5493 3.0939 1.5863 8 14 2.5005 5.2602 0.2187 9 1 1.4794 5.4024 -0.8502 10 1 2.0678 6.0187 1.4198 11 1 3.7996 5.7945 -0.2629 12 6 3.6762 0.6679 0.0063 13 6 4.9107 1.3178 0.0135 14 6 6.0680 0.5666 0.0180 15 6 5.9787 -0.8316 0.0149 16 6 4.7701 -1.4391 0.0069 17 7 3.6161 -0.7046 0.0023 18 6 2.2985 -1.0874 -0.0031 19 6 1.8109 -2.5133 -0.0076 20 1 0.7527 -2.5363 0.2523 21 6 2.0072 -3.1149 -1.4006 22 7 2.5736 -3.2947 0.9751 23 1 -0.3634 -0.0003 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 4.0265 3.7680 2.0950 27 1 4.9599 2.3966 0.0145 28 1 7.0330 1.0515 0.0231 29 1 6.8795 -1.4275 0.0188 30 1 4.7157 -2.5178 0.0050 31 1 1.4412 -2.5352 -2.1298 32 1 3.0655 -3.0920 -1.6606 33 1 1.6541 -4.1462 -1.4040 34 1 2.5125 -2.8800 1.8929 35 1 2.2655 -4.2554 0.9909 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082966416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:08 Heat of formation + Delta-G solvation = 42.984328 kcal Electronic energy + Delta-G solvation = -17844.605047 eV Core-core repulsion = 15228.100597 eV Total energy + Delta-G solvation = -2616.504450 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.31505 -37.61240 -36.45656 -35.08684 -33.03861 -31.58022 -30.02618 -29.31590 -27.49576 -26.15927 -24.03325 -22.62469 -21.45243 -20.15855 -18.51049 -17.47270 -16.69482 -16.56311 -16.29468 -16.02254 -15.72613 -15.53134 -14.61016 -14.52867 -14.28996 -13.72231 -13.32521 -13.20664 -13.03150 -12.86079 -12.82057 -12.68340 -12.57705 -12.27172 -11.94905 -11.65688 -11.61533 -11.33489 -10.77459 -10.39757 -9.59364 -8.73525 -8.40588 -7.81156 -5.83010 0.52244 0.96998 1.37617 1.41034 1.53434 2.27080 2.37330 2.55597 3.00786 3.53566 3.68075 3.97769 4.24850 4.36999 4.46152 4.47400 4.60056 4.70942 4.77106 4.84243 4.96509 5.03992 5.08258 5.16807 5.31711 5.36428 5.43272 5.57701 5.64220 5.80797 5.92794 6.04338 6.23126 6.30919 6.57028 6.67597 6.84227 7.13118 7.21592 7.30217 8.60869 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.009450 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.589832 B = 2962.111416 C = 3829.825672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.221 4.221 3 C 0.022 3.978 4 C -0.478 4.478 5 H 0.067 0.933 6 C 0.034 3.966 7 N -0.845 5.845 8 Si 0.963 3.037 9 H -0.262 1.262 10 H -0.271 1.271 11 H -0.272 1.272 12 C -0.072 4.072 13 C -0.019 4.019 14 C -0.231 4.231 15 C -0.157 4.157 16 C 0.026 3.974 17 N -0.344 5.344 18 C -0.015 4.015 19 C 0.168 3.832 20 H 0.062 0.938 21 C -0.133 4.133 22 N -0.847 5.847 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.275 0.725 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.157 0.843 30 H 0.172 0.828 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.341 0.659 35 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.982 -9.735 -2.166 10.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.229 4.229 3 C 0.015 3.985 4 C -0.511 4.511 5 H 0.085 0.915 6 C -0.177 4.177 7 N -0.474 5.474 8 Si 0.787 3.213 9 H -0.186 1.186 10 H -0.197 1.197 11 H -0.198 1.198 12 C -0.173 4.173 13 C -0.038 4.038 14 C -0.251 4.251 15 C -0.177 4.177 16 C -0.093 4.093 17 N -0.010 5.010 18 C -0.128 4.128 19 C 0.057 3.943 20 H 0.079 0.921 21 C -0.191 4.191 22 N -0.379 5.379 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.142 0.858 29 H 0.175 0.825 30 H 0.189 0.811 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.016 -9.686 -2.506 10.005 hybrid contribution -0.718 1.263 0.635 1.585 sum -0.702 -8.423 -1.872 8.657 Atomic orbital electron populations 1.19868 0.89537 1.00838 1.00547 1.19736 0.96125 0.92236 1.14831 1.17576 0.89027 0.93286 0.98564 1.18625 1.08626 0.91752 1.32140 0.91479 1.26367 0.93574 1.04296 0.93433 1.70114 1.23666 1.36443 1.17224 0.85438 0.78811 0.78075 0.79026 1.18555 1.19650 1.19766 1.18898 0.95595 0.82197 1.20586 1.20677 0.90633 0.98931 0.93574 1.21095 0.97207 0.94482 1.12320 1.20703 0.96873 0.94629 1.05527 1.21856 0.84181 0.97845 1.05389 1.40960 1.04863 1.05932 1.49284 1.19979 0.80854 0.95574 1.16345 1.19707 0.94926 0.85825 0.93878 0.92058 1.21738 1.01603 1.01025 0.94687 1.58670 1.61871 1.06550 1.10793 0.92616 0.91585 0.93814 0.91479 0.87621 0.85759 0.82533 0.81120 0.92703 0.93631 0.89912 0.84663 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.98 9.88 71.24 0.70 -1.28 16 2 C -0.22 -10.61 6.14 -19.79 -0.12 -10.73 16 3 C 0.02 1.22 5.61 -20.94 -0.12 1.11 16 4 C -0.48 -27.11 8.97 23.12 0.21 -26.90 16 5 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 6 C 0.03 1.81 4.62 85.09 0.39 2.21 16 7 N -0.84 -47.26 10.45 21.77 0.23 -47.04 16 8 Si 0.96 41.48 29.61 68.60 2.03 43.51 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 12 C -0.07 -3.89 6.28 39.44 0.25 -3.64 16 13 C -0.02 -0.98 8.65 22.51 0.19 -0.79 16 14 C -0.23 -10.11 10.15 22.66 0.23 -9.88 16 15 C -0.16 -6.01 9.98 22.04 0.22 -5.79 16 16 C 0.03 1.05 10.30 83.23 0.86 1.91 16 17 N -0.34 -16.00 2.94 -331.90 -0.98 -16.98 16 18 C -0.01 -0.62 5.75 40.86 0.23 -0.39 16 19 C 0.17 5.14 3.58 44.17 0.16 5.30 16 20 H 0.06 1.74 6.66 -2.39 -0.02 1.72 16 21 C -0.13 -3.53 9.47 71.98 0.68 -2.85 16 22 N -0.85 -22.00 7.79 -171.81 -1.34 -23.34 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.07 2.15 6.90 -2.39 -0.02 2.13 16 25 H 0.04 1.81 8.01 -2.38 -0.02 1.79 16 26 H 0.28 14.27 8.31 -92.71 -0.77 13.49 16 27 H 0.11 5.80 6.19 -2.91 -0.02 5.79 16 28 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 29 H 0.16 4.61 8.06 -2.91 -0.02 4.58 16 30 H 0.17 5.80 7.13 -2.91 -0.02 5.78 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.34 9.55 8.99 -89.69 -0.81 8.75 16 35 H 0.35 6.70 9.04 -89.69 -0.81 5.89 16 Total: -1.00 -65.73 289.32 3.33 -62.40 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.50 Total: 33.18 kcal Atomic # 6 Polarization: -55.62 SS G_CDS: 3.89 Total: -51.73 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -2.09 Total: -87.35 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -65.73 3.33 -62.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082966416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.383 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds