Wall clock time and date at job start Mon Mar 30 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41995 * 126.04943 * 2 1 4 4 C 1.40479 * 126.87521 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00254 * 318.60591 * 4 3 2 6 6 C 1.39518 * 119.99686 * 138.59612 * 4 3 2 7 7 N 1.31244 * 119.99647 * 157.34172 * 6 4 3 8 8 Si 1.86799 * 120.00242 * 337.34685 * 6 4 3 9 9 H 1.48509 * 109.46980 * 96.06834 * 8 6 4 10 10 H 1.48491 * 109.47178 * 216.06550 * 8 6 4 11 11 H 1.48494 * 109.47018 * 336.06712 * 8 6 4 12 12 C 1.41743 * 106.24922 * 180.02562 * 3 2 1 13 13 C 1.39514 * 132.43489 * 180.02562 * 12 3 2 14 14 C 1.37962 * 119.24826 * 179.97438 * 13 12 3 15 15 C 1.40121 * 119.33182 * 359.74112 * 14 13 12 16 16 C 1.35261 * 120.34050 * 0.53130 * 15 14 13 17 17 N 1.36806 * 120.83393 * 359.45852 * 16 15 14 18 18 C 1.34490 * 126.04768 * 180.02562 * 2 1 3 19 19 C 1.50698 * 125.07791 * 0.02562 * 18 2 1 20 20 H 1.09003 * 109.46915 * 13.18074 * 19 18 2 21 21 C 1.52994 * 109.47482 * 253.17428 * 19 18 2 22 22 N 1.46902 * 109.46734 * 133.17178 * 19 18 2 23 23 H 1.09007 * 109.46996 * 89.97657 * 1 2 3 24 24 H 1.09003 * 109.47170 * 209.97625 * 1 2 3 25 25 H 1.08997 * 109.47214 * 329.97784 * 1 2 3 26 26 H 0.97002 * 120.00086 * 180.02562 * 7 6 4 27 27 H 1.07995 * 120.37773 * 359.97436 * 13 12 3 28 28 H 1.07996 * 120.33714 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.82956 * 180.28645 * 15 14 13 30 30 H 1.07997 * 119.58353 * 179.72731 * 16 15 14 31 31 H 1.09004 * 109.47105 * 59.99871 * 21 19 18 32 32 H 1.08994 * 109.47278 * 180.02562 * 21 19 18 33 33 H 1.09003 * 109.46831 * 300.00260 * 21 19 18 34 34 H 1.00904 * 111.00026 * 67.37351 * 22 19 18 35 35 H 1.00899 * 111.00130 * 191.32421 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3426 1.1480 0.0000 4 6 1.9301 2.4909 -0.0005 5 1 1.1011 2.8010 -0.6193 6 6 2.5914 3.4240 0.7986 7 7 2.5367 4.7006 0.4988 8 14 3.5546 2.8564 2.2951 9 1 4.9880 2.7107 1.9350 10 1 3.4167 3.8588 3.3819 11 1 3.0250 1.5486 2.7578 12 6 3.6763 0.6679 -0.0006 13 6 4.9108 1.3178 -0.0004 14 6 6.0680 0.5667 -0.0006 15 6 5.9787 -0.8317 0.0045 16 6 4.7702 -1.4391 -0.0012 17 7 3.6161 -0.7045 -0.0010 18 6 2.2984 -1.0874 -0.0005 19 6 1.8109 -2.5133 -0.0017 20 1 0.7467 -2.5332 -0.2364 21 6 2.0405 -3.1320 1.3786 22 7 2.5496 -3.2824 -1.0121 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 2.9967 5.3494 1.0542 27 1 4.9600 2.3966 -0.0001 28 1 7.0330 1.0515 -0.0009 29 1 6.8794 -1.4275 0.0090 30 1 4.7156 -2.5177 -0.0017 31 1 1.4924 -2.5613 2.1283 32 1 1.6883 -4.1635 1.3776 33 1 3.1048 -3.1121 1.6132 34 1 3.5200 -3.3807 -0.7536 35 1 2.1228 -4.1840 -1.1636 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082966418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:10 Heat of formation + Delta-G solvation = 66.512405 kcal Electronic energy + Delta-G solvation = -17965.170914 eV Core-core repulsion = 15349.686718 eV Total energy + Delta-G solvation = -2615.484196 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96378 -36.34282 -35.23594 -33.32597 -31.73766 -30.33440 -28.79819 -27.88701 -26.10294 -24.44900 -22.79552 -21.38041 -19.89031 -18.79436 -16.96488 -16.26477 -15.61966 -15.34120 -14.69434 -14.43495 -14.28360 -13.73311 -13.35000 -13.10067 -12.82553 -12.76001 -12.19737 -11.87070 -11.78806 -11.51429 -11.36445 -11.27546 -10.86603 -10.55491 -10.30665 -10.16686 -9.95153 -9.73648 -9.22410 -8.62465 -8.55928 -7.20372 -6.67465 -6.26312 -4.02928 1.87645 2.39019 3.14415 3.28263 3.42315 3.86307 3.91361 4.18556 4.44760 4.76732 5.06519 5.21759 5.29106 5.41568 5.45789 5.75931 5.80799 5.91039 6.03671 6.13712 6.18414 6.25463 6.32492 6.58062 6.62833 6.81154 6.96927 7.03502 7.14947 7.24365 7.35342 7.49667 7.52210 7.54119 7.96920 8.25328 8.47634 8.64404 8.83964 9.07739 10.37653 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.011159 C = 0.008606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.666171 B = 2508.565017 C = 3252.697068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.184 4.184 3 C 0.052 3.948 4 C -0.438 4.438 5 H 0.090 0.910 6 C 0.089 3.911 7 N -0.829 5.829 8 Si 0.880 3.120 9 H -0.258 1.258 10 H -0.290 1.290 11 H -0.256 1.256 12 C -0.072 4.072 13 C -0.017 4.017 14 C -0.236 4.236 15 C -0.135 4.135 16 C 0.014 3.986 17 N -0.349 5.349 18 C 0.011 3.989 19 C 0.161 3.839 20 H 0.097 0.903 21 C -0.184 4.184 22 N -0.842 5.842 23 H 0.048 0.952 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.277 0.723 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.334 0.666 35 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -12.172 1.670 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.192 4.192 3 C 0.044 3.956 4 C -0.470 4.470 5 H 0.108 0.892 6 C -0.125 4.125 7 N -0.457 5.457 8 Si 0.706 3.294 9 H -0.184 1.184 10 H -0.216 1.216 11 H -0.180 1.180 12 C -0.171 4.171 13 C -0.036 4.036 14 C -0.256 4.256 15 C -0.157 4.157 16 C -0.105 4.105 17 N -0.017 5.017 18 C -0.102 4.102 19 C 0.049 3.951 20 H 0.115 0.885 21 C -0.243 4.243 22 N -0.373 5.373 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.128 0.872 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.579 -11.507 1.191 11.676 hybrid contribution 0.900 -0.825 1.538 1.964 sum 2.479 -12.333 2.729 12.872 Atomic orbital electron populations 1.19927 0.91047 1.00694 1.00211 1.19312 0.94736 0.91900 1.13230 1.17402 0.87423 0.93147 0.97584 1.18310 1.15936 0.89291 1.23470 0.89184 1.25812 0.94108 0.94270 0.98356 1.69933 1.37227 1.02456 1.36065 0.86822 0.81207 0.79671 0.81749 1.18352 1.21648 1.17984 1.18842 0.95385 0.81455 1.21400 1.20711 0.90254 0.99573 0.93056 1.20611 0.97221 0.93205 1.14516 1.20238 0.95276 0.95265 1.04874 1.20992 0.85263 0.95520 1.08745 1.40644 1.03564 1.06482 1.51031 1.19415 0.81293 0.93911 1.15560 1.19838 0.98294 0.88248 0.88688 0.88496 1.22634 1.02003 1.00161 0.99518 1.58979 1.06387 1.22556 1.49399 0.93347 0.93967 0.91774 0.91251 0.85499 0.87191 0.86132 0.85212 0.91453 0.92909 0.93068 0.85123 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.17 9.70 36.01 0.35 -0.82 16 2 C -0.18 -4.20 6.14 -104.51 -0.64 -4.84 16 3 C 0.05 1.34 4.84 -106.28 -0.51 0.83 16 4 C -0.44 -12.12 9.46 -38.26 -0.36 -12.48 16 5 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 6 C 0.09 2.41 5.01 -17.33 -0.09 2.32 16 7 N -0.83 -22.96 13.95 55.53 0.77 -22.18 16 8 Si 0.88 21.46 24.42 -169.99 -4.15 17.31 16 9 H -0.26 -6.08 5.71 56.52 0.32 -5.76 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.07 -1.78 5.53 -83.57 -0.46 -2.25 16 13 C -0.02 -0.40 7.17 -39.21 -0.28 -0.68 16 14 C -0.24 -4.81 10.15 -38.98 -0.40 -5.21 16 15 C -0.14 -2.47 9.98 -39.94 -0.40 -2.86 16 16 C 0.01 0.26 10.00 -16.39 -0.16 0.10 16 17 N -0.35 -7.67 2.94 -56.26 -0.17 -7.84 16 18 C 0.01 0.23 5.81 -81.51 -0.47 -0.25 16 19 C 0.16 2.52 3.53 -68.87 -0.24 2.28 16 20 H 0.10 1.44 6.93 -51.93 -0.36 1.08 16 21 C -0.18 -2.50 9.40 37.15 0.35 -2.15 16 22 N -0.84 -11.75 9.14 -5.66 -0.05 -11.80 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.67 7.28 -51.93 -0.38 0.30 16 25 H 0.06 1.26 8.01 -51.93 -0.42 0.85 16 26 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.13 3.07 6.02 -52.49 -0.32 2.75 16 28 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.13 1.96 5.55 -52.49 -0.29 1.67 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.72 7.80 -51.93 -0.41 0.32 16 34 H 0.33 4.46 5.88 -39.29 -0.23 4.23 16 35 H 0.34 3.63 9.08 -39.29 -0.36 3.27 16 LS Contribution 280.54 15.07 4.23 4.23 Total: -1.00 -30.08 280.54 -7.19 -37.27 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.50 Total: 9.01 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.32 Total: -26.01 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.56 Total: -41.82 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.15 Total: 17.31 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.08 -7.19 -37.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082966418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.785 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds