Wall clock time and date at job start Mon Mar 30 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41995 * 126.04943 * 2 1 4 4 C 1.40479 * 126.87521 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00254 * 318.60591 * 4 3 2 6 6 C 1.39518 * 119.99686 * 138.59612 * 4 3 2 7 7 N 1.31244 * 119.99647 * 157.34172 * 6 4 3 8 8 Si 1.86799 * 120.00242 * 337.34685 * 6 4 3 9 9 H 1.48509 * 109.46980 * 96.06834 * 8 6 4 10 10 H 1.48491 * 109.47178 * 216.06550 * 8 6 4 11 11 H 1.48494 * 109.47018 * 336.06712 * 8 6 4 12 12 C 1.41743 * 106.24922 * 180.02562 * 3 2 1 13 13 C 1.39514 * 132.43489 * 180.02562 * 12 3 2 14 14 C 1.37962 * 119.24826 * 179.97438 * 13 12 3 15 15 C 1.40121 * 119.33182 * 359.74112 * 14 13 12 16 16 C 1.35261 * 120.34050 * 0.53130 * 15 14 13 17 17 N 1.36806 * 120.83393 * 359.45852 * 16 15 14 18 18 C 1.34490 * 126.04768 * 180.02562 * 2 1 3 19 19 C 1.50698 * 125.07791 * 0.02562 * 18 2 1 20 20 H 1.09003 * 109.46915 * 13.18074 * 19 18 2 21 21 C 1.52994 * 109.47482 * 253.17428 * 19 18 2 22 22 N 1.46902 * 109.46734 * 133.17178 * 19 18 2 23 23 H 1.09007 * 109.46996 * 89.97657 * 1 2 3 24 24 H 1.09003 * 109.47170 * 209.97625 * 1 2 3 25 25 H 1.08997 * 109.47214 * 329.97784 * 1 2 3 26 26 H 0.97002 * 120.00086 * 180.02562 * 7 6 4 27 27 H 1.07995 * 120.37773 * 359.97436 * 13 12 3 28 28 H 1.07996 * 120.33714 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.82956 * 180.28645 * 15 14 13 30 30 H 1.07997 * 119.58353 * 179.72731 * 16 15 14 31 31 H 1.09004 * 109.47105 * 59.99871 * 21 19 18 32 32 H 1.08994 * 109.47278 * 180.02562 * 21 19 18 33 33 H 1.09003 * 109.46831 * 300.00260 * 21 19 18 34 34 H 1.00904 * 111.00026 * 67.37351 * 22 19 18 35 35 H 1.00899 * 111.00130 * 191.32421 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3426 1.1480 0.0000 4 6 1.9301 2.4909 -0.0005 5 1 1.1011 2.8010 -0.6193 6 6 2.5914 3.4240 0.7986 7 7 2.5367 4.7006 0.4988 8 14 3.5546 2.8564 2.2951 9 1 4.9880 2.7107 1.9350 10 1 3.4167 3.8588 3.3819 11 1 3.0250 1.5486 2.7578 12 6 3.6763 0.6679 -0.0006 13 6 4.9108 1.3178 -0.0004 14 6 6.0680 0.5667 -0.0006 15 6 5.9787 -0.8317 0.0045 16 6 4.7702 -1.4391 -0.0012 17 7 3.6161 -0.7045 -0.0010 18 6 2.2984 -1.0874 -0.0005 19 6 1.8109 -2.5133 -0.0017 20 1 0.7467 -2.5332 -0.2364 21 6 2.0405 -3.1320 1.3786 22 7 2.5496 -3.2824 -1.0121 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 2.9967 5.3494 1.0542 27 1 4.9600 2.3966 -0.0001 28 1 7.0330 1.0515 -0.0009 29 1 6.8794 -1.4275 0.0090 30 1 4.7156 -2.5177 -0.0017 31 1 1.4924 -2.5613 2.1283 32 1 1.6883 -4.1635 1.3776 33 1 3.1048 -3.1121 1.6132 34 1 3.5200 -3.3807 -0.7536 35 1 2.1228 -4.1840 -1.1636 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082966418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:10 Heat of formation + Delta-G solvation = 46.243308 kcal Electronic energy + Delta-G solvation = -17966.049848 eV Core-core repulsion = 15349.686718 eV Total energy + Delta-G solvation = -2616.363130 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.64912 -37.81057 -36.72686 -35.13687 -33.49712 -31.92773 -30.23368 -29.34947 -27.68271 -26.20661 -24.28274 -22.93009 -21.57033 -20.43636 -18.84615 -17.68556 -17.27548 -16.77033 -16.45320 -15.97619 -15.96068 -15.11722 -14.94009 -14.75373 -14.32794 -14.00451 -13.76882 -13.44715 -13.24115 -13.16529 -13.02360 -12.83172 -12.41623 -12.34156 -11.92950 -11.85576 -11.69457 -11.46997 -11.08204 -10.43445 -9.69389 -8.88976 -8.66699 -8.01985 -6.03417 0.20889 0.75249 1.21505 1.28040 1.44129 2.11898 2.20677 2.29944 2.73352 3.25801 3.59509 3.81097 3.95331 4.21670 4.25212 4.30491 4.41502 4.46759 4.53955 4.70235 4.82860 4.94422 5.02473 5.04347 5.14362 5.22559 5.31603 5.40623 5.44129 5.61506 5.76961 5.83000 6.11343 6.22490 6.38853 6.53988 6.62100 6.92091 6.95074 7.12198 8.44822 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.011159 C = 0.008606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.666171 B = 2508.565017 C = 3252.697068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.199 4.199 3 C -0.005 4.005 4 C -0.463 4.463 5 H 0.049 0.951 6 C 0.054 3.946 7 N -0.880 5.880 8 Si 0.935 3.065 9 H -0.245 1.245 10 H -0.282 1.282 11 H -0.276 1.276 12 C -0.079 4.079 13 C -0.075 4.075 14 C -0.194 4.194 15 C -0.146 4.146 16 C 0.023 3.977 17 N -0.350 5.350 18 C 0.006 3.994 19 C 0.167 3.833 20 H 0.107 0.893 21 C -0.177 4.177 22 N -0.848 5.848 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.281 0.719 27 H 0.107 0.893 28 H 0.140 0.860 29 H 0.174 0.826 30 H 0.175 0.825 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.338 0.662 35 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -16.774 2.170 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.206 4.206 3 C -0.012 4.012 4 C -0.497 4.497 5 H 0.067 0.933 6 C -0.155 4.155 7 N -0.511 5.511 8 Si 0.760 3.240 9 H -0.170 1.170 10 H -0.208 1.208 11 H -0.201 1.201 12 C -0.180 4.180 13 C -0.095 4.095 14 C -0.214 4.214 15 C -0.166 4.166 16 C -0.096 4.096 17 N -0.017 5.017 18 C -0.107 4.107 19 C 0.055 3.945 20 H 0.124 0.876 21 C -0.236 4.236 22 N -0.382 5.382 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.158 0.842 29 H 0.192 0.808 30 H 0.192 0.808 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.154 0.846 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.781 -16.145 1.684 16.667 hybrid contribution 0.398 0.267 1.253 1.341 sum 4.179 -15.878 2.936 16.680 Atomic orbital electron populations 1.19950 0.89242 1.01476 1.00863 1.19840 0.96517 0.91949 1.12332 1.17546 0.89210 0.93194 1.01279 1.18182 1.15866 0.91164 1.24457 0.93309 1.26302 0.95121 0.94151 0.99935 1.69979 1.40182 1.03277 1.37703 0.85993 0.80708 0.78064 0.79263 1.16970 1.20814 1.20117 1.18959 0.95319 0.83144 1.20591 1.20724 0.91335 0.99215 0.98186 1.21235 0.97252 0.94615 1.08268 1.20866 0.97173 0.94524 1.04067 1.21924 0.84351 0.97658 1.05697 1.41009 1.05164 1.05762 1.49747 1.20115 0.80464 0.96065 1.14010 1.19838 0.98697 0.85444 0.90546 0.87558 1.22565 1.01790 1.01816 0.97425 1.58846 1.06694 1.23922 1.48743 0.92683 0.90416 0.93665 0.90902 0.87519 0.84243 0.80845 0.80768 0.92710 0.89363 0.93354 0.84622 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.25 9.70 71.24 0.69 -1.56 16 2 C -0.20 -9.25 6.14 -19.79 -0.12 -9.37 16 3 C -0.01 -0.28 4.84 -20.94 -0.10 -0.38 16 4 C -0.46 -27.88 9.46 23.13 0.22 -27.66 16 5 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 6 C 0.05 3.12 5.01 85.09 0.43 3.54 16 7 N -0.88 -52.52 13.95 21.77 0.30 -52.22 16 8 Si 0.93 46.69 24.42 68.60 1.67 48.36 16 9 H -0.25 -11.50 5.71 99.48 0.57 -10.93 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 11 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 12 C -0.08 -3.94 5.53 39.45 0.22 -3.73 16 13 C -0.08 -3.54 7.17 22.51 0.16 -3.38 16 14 C -0.19 -7.19 10.15 22.66 0.23 -6.96 16 15 C -0.15 -4.47 9.98 22.04 0.22 -4.25 16 16 C 0.02 0.73 10.00 83.23 0.83 1.57 16 17 N -0.35 -14.56 2.94 -331.90 -0.98 -15.54 16 18 C 0.01 0.23 5.81 40.86 0.24 0.47 16 19 C 0.17 4.57 3.53 44.17 0.16 4.73 16 20 H 0.11 2.74 6.93 -2.39 -0.02 2.72 16 21 C -0.18 -3.99 9.40 71.98 0.68 -3.32 16 22 N -0.85 -19.52 9.14 -171.80 -1.57 -21.09 16 23 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.08 2.38 7.28 -2.39 -0.02 2.36 16 25 H 0.04 1.89 8.01 -2.39 -0.02 1.87 16 26 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.11 5.35 6.02 -2.91 -0.02 5.33 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 30 H 0.18 4.08 5.55 -2.91 -0.02 4.06 16 31 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.12 7.80 -2.39 -0.02 1.10 16 34 H 0.34 7.08 5.88 -89.69 -0.53 6.55 16 35 H 0.36 5.81 9.08 -89.69 -0.81 5.00 16 Total: -1.00 -71.68 280.54 2.91 -68.77 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.36 Total: 22.00 kcal Atomic # 6 Polarization: -54.13 SS G_CDS: 3.84 Total: -50.28 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.24 Total: -88.85 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.67 Total: 48.36 kcal Total: -71.68 2.91 -68.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082966418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.012 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds