Wall clock time and date at job start Mon Mar 30 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00020 * 2 1 4 4 H 1.48503 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46928 * 299.99814 * 3 2 1 6 6 H 1.48501 * 109.47228 * 59.99464 * 3 2 1 7 7 C 1.37875 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00051 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.36824 * 125.06544 * 265.02691 * 10 9 7 12 12 C 1.34235 * 109.93046 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.50348 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47212 * 265.02582 * 13 12 11 15 15 N 1.46894 * 109.47515 * 179.97438 * 14 13 12 16 16 C 1.46494 * 106.99799 * 0.26266 * 12 11 10 17 17 C 1.39628 * 134.03182 * 180.50683 * 16 12 11 18 18 C 1.36628 * 119.76239 * 179.57648 * 17 16 12 19 19 C 1.38835 * 120.52892 * 359.69180 * 18 17 16 20 20 C 1.37747 * 120.66634 * 0.02562 * 19 18 17 21 21 C 1.37688 * 125.05652 * 84.98791 * 10 9 7 22 22 H 0.97001 * 120.00045 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46683 * 60.00016 * 9 7 2 24 24 H 1.09000 * 109.47438 * 300.00561 * 9 7 2 25 25 H 1.07999 * 125.03480 * 359.96853 * 11 10 9 26 26 H 1.09002 * 109.47060 * 25.02637 * 13 12 11 27 27 H 1.09001 * 109.47380 * 145.02724 * 13 12 11 28 28 H 1.09002 * 109.47153 * 299.99998 * 14 13 12 29 29 H 1.08998 * 109.47533 * 59.99628 * 14 13 12 30 30 H 1.00903 * 111.00455 * 179.97438 * 15 14 13 31 31 H 1.00899 * 111.00176 * 303.95826 * 15 14 13 32 32 H 1.08003 * 120.12047 * 359.24458 * 17 16 12 33 33 H 1.08001 * 119.73487 * 179.71954 * 18 17 16 34 34 H 1.07998 * 119.66271 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.11304 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6392 -4.2737 -1.1143 12 6 3.5050 -5.2384 -0.7654 13 6 4.2111 -6.1892 -1.6973 14 6 3.4194 -7.4952 -1.7895 15 7 4.1073 -8.4217 -2.6983 16 6 3.6290 -5.1954 0.6937 17 6 4.3689 -5.9244 1.6267 18 6 4.2669 -5.6257 2.9560 19 6 3.4380 -4.5984 3.3864 20 6 2.7037 -3.8627 2.4825 21 6 2.7927 -4.1493 1.1240 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 2.3322 -4.0523 -2.1258 26 1 4.2860 -5.7391 -2.6873 27 1 5.2109 -6.3966 -1.3159 28 1 3.3445 -7.9452 -0.7996 29 1 2.4196 -7.2879 -2.1709 30 1 3.6039 -9.2928 -2.7759 31 1 4.2464 -8.0021 -3.6053 32 1 5.0155 -6.7252 1.2993 33 1 4.8360 -6.1929 3.6777 34 1 3.3683 -4.3739 4.4405 35 1 2.0614 -3.0659 2.8272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082966425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:31 Heat of formation + Delta-G solvation = 41.856373 kcal Electronic energy + Delta-G solvation = -16908.392745 eV Core-core repulsion = 14291.839383 eV Total energy + Delta-G solvation = -2616.553361 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60751 -36.45922 -35.53866 -33.44512 -31.96824 -29.61822 -29.22215 -27.87381 -25.81123 -23.16381 -22.11609 -21.77243 -20.43217 -18.83272 -16.77038 -16.16049 -15.94414 -15.46866 -14.97610 -14.57852 -14.39620 -14.03554 -13.60610 -13.18905 -13.08478 -12.40737 -12.17167 -11.98999 -11.66801 -11.49448 -11.29692 -11.18565 -10.89231 -10.70719 -10.64262 -10.35728 -10.04455 -9.61166 -8.86919 -8.70005 -8.68382 -7.48735 -6.85886 -6.28095 -4.38918 1.76148 2.28864 3.16464 3.24424 3.28936 3.36572 3.87352 4.26512 4.53471 4.66358 5.03360 5.20781 5.34986 5.47293 5.53559 5.56537 5.66165 5.81331 5.88449 6.01603 6.18915 6.33269 6.37434 6.45727 6.47728 6.66730 6.86207 6.96452 7.08933 7.12621 7.19165 7.38490 7.46224 7.55337 7.63325 7.85168 8.10891 8.18101 8.70305 9.29145 10.76767 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.006550 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.549139 B = 4274.002752 C = 5115.136455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.235 3.765 10 N -0.452 5.452 11 C 0.075 3.925 12 C -0.209 4.209 13 C -0.029 4.029 14 C 0.065 3.935 15 N -0.855 5.855 16 C -0.108 4.108 17 C -0.080 4.080 18 C -0.159 4.159 19 C -0.119 4.119 20 C -0.111 4.111 21 C 0.106 3.894 22 H 0.267 0.733 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.157 0.843 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.337 0.663 31 H 0.337 0.663 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 -11.338 -0.941 12.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.128 5.128 11 C -0.056 4.056 12 C -0.217 4.217 13 C -0.068 4.068 14 C -0.065 4.065 15 N -0.384 5.384 16 C -0.113 4.113 17 C -0.099 4.099 18 C -0.178 4.178 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.003 4.003 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.174 0.826 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.215 -10.866 -0.436 12.060 hybrid contribution -0.631 1.220 -0.588 1.494 sum 4.584 -9.646 -1.024 10.729 Atomic orbital electron populations 1.69932 1.06095 1.27564 1.49360 1.24952 0.94936 0.99548 0.94366 0.86334 0.80146 0.82582 0.77869 1.19489 1.20647 1.20605 1.21419 0.93812 0.89874 1.52694 0.91657 1.19690 0.87099 0.82140 0.99378 1.44754 1.36458 1.28127 1.03482 1.21576 0.97905 0.94248 0.91827 1.19858 1.06774 1.03234 0.91796 1.19671 0.98102 0.91943 0.97071 1.21844 0.94775 0.92991 0.96889 1.58759 1.55713 1.07774 1.16144 1.19030 1.00877 0.98528 0.92830 1.20082 0.98650 0.98951 0.92171 1.20428 1.02066 1.00010 0.95306 1.20648 0.98090 0.96766 0.98375 1.20147 1.01975 1.01099 0.89885 1.18272 0.97377 0.95711 0.88976 0.92328 0.93613 0.93839 0.82602 0.92192 0.91158 0.91059 0.95683 0.85110 0.85089 0.87107 0.87123 0.86709 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.93 13.29 55.43 0.74 -24.20 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.24 5.85 5.75 -5.19 -0.03 5.82 16 10 N -0.45 -10.05 2.76 -115.71 -0.32 -10.37 16 11 C 0.07 1.45 11.19 -16.74 -0.19 1.26 16 12 C -0.21 -3.73 5.57 -102.71 -0.57 -4.30 16 13 C -0.03 -0.42 6.01 -27.88 -0.17 -0.59 16 14 C 0.07 0.83 6.77 -3.83 -0.03 0.80 16 15 N -0.86 -9.01 9.62 -10.37 -0.10 -9.11 16 16 C -0.11 -2.09 6.35 -105.13 -0.67 -2.75 16 17 C -0.08 -1.36 10.05 -39.64 -0.40 -1.75 16 18 C -0.16 -2.53 9.97 -39.94 -0.40 -2.93 16 19 C -0.12 -2.02 10.01 -39.54 -0.40 -2.41 16 20 C -0.11 -2.21 10.00 -39.43 -0.39 -2.61 16 21 C 0.11 2.27 6.81 -83.99 -0.57 1.70 16 22 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 23 H 0.05 1.16 8.12 -51.93 -0.42 0.74 16 24 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.16 2.65 8.06 -52.49 -0.42 2.22 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.34 2.94 9.08 -39.29 -0.36 2.58 16 31 H 0.34 3.08 8.99 -39.29 -0.35 2.73 16 32 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 303.17 15.07 4.57 4.57 Total: -1.00 -28.94 303.17 -9.27 -38.21 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.90 Total: 6.00 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -4.23 Total: -21.03 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.32 Total: -43.67 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.94 -9.27 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082966425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.066 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds