Wall clock time and date at job start Mon Mar 30 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00020 * 2 1 4 4 H 1.48503 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46928 * 299.99814 * 3 2 1 6 6 H 1.48501 * 109.47228 * 59.99464 * 3 2 1 7 7 C 1.37875 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00051 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.36824 * 125.06544 * 265.02691 * 10 9 7 12 12 C 1.34235 * 109.93046 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.50348 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47212 * 265.02582 * 13 12 11 15 15 N 1.46894 * 109.47515 * 179.97438 * 14 13 12 16 16 C 1.46494 * 106.99799 * 0.26266 * 12 11 10 17 17 C 1.39628 * 134.03182 * 180.50683 * 16 12 11 18 18 C 1.36628 * 119.76239 * 179.57648 * 17 16 12 19 19 C 1.38835 * 120.52892 * 359.69180 * 18 17 16 20 20 C 1.37747 * 120.66634 * 0.02562 * 19 18 17 21 21 C 1.37688 * 125.05652 * 84.98791 * 10 9 7 22 22 H 0.97001 * 120.00045 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46683 * 60.00016 * 9 7 2 24 24 H 1.09000 * 109.47438 * 300.00561 * 9 7 2 25 25 H 1.07999 * 125.03480 * 359.96853 * 11 10 9 26 26 H 1.09002 * 109.47060 * 25.02637 * 13 12 11 27 27 H 1.09001 * 109.47380 * 145.02724 * 13 12 11 28 28 H 1.09002 * 109.47153 * 299.99998 * 14 13 12 29 29 H 1.08998 * 109.47533 * 59.99628 * 14 13 12 30 30 H 1.00903 * 111.00455 * 179.97438 * 15 14 13 31 31 H 1.00899 * 111.00176 * 303.95826 * 15 14 13 32 32 H 1.08003 * 120.12047 * 359.24458 * 17 16 12 33 33 H 1.08001 * 119.73487 * 179.71954 * 18 17 16 34 34 H 1.07998 * 119.66271 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.11304 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6392 -4.2737 -1.1143 12 6 3.5050 -5.2384 -0.7654 13 6 4.2111 -6.1892 -1.6973 14 6 3.4194 -7.4952 -1.7895 15 7 4.1073 -8.4217 -2.6983 16 6 3.6290 -5.1954 0.6937 17 6 4.3689 -5.9244 1.6267 18 6 4.2669 -5.6257 2.9560 19 6 3.4380 -4.5984 3.3864 20 6 2.7037 -3.8627 2.4825 21 6 2.7927 -4.1493 1.1240 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 2.3322 -4.0523 -2.1258 26 1 4.2860 -5.7391 -2.6873 27 1 5.2109 -6.3966 -1.3159 28 1 3.3445 -7.9452 -0.7996 29 1 2.4196 -7.2879 -2.1709 30 1 3.6039 -9.2928 -2.7759 31 1 4.2464 -8.0021 -3.6053 32 1 5.0155 -6.7252 1.2993 33 1 4.8360 -6.1929 3.6777 34 1 3.3683 -4.3739 4.4405 35 1 2.0614 -3.0659 2.8272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082966425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:31 Heat of formation + Delta-G solvation = 25.212314 kcal Electronic energy + Delta-G solvation = -16909.114485 eV Core-core repulsion = 14291.839383 eV Total energy + Delta-G solvation = -2617.275102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.09832 -37.88390 -36.69076 -35.31338 -33.49110 -31.15622 -30.56418 -29.42474 -27.42622 -24.92674 -23.41488 -23.08912 -21.92294 -20.24668 -18.84211 -17.67581 -17.33864 -16.68520 -16.32258 -16.18201 -15.73196 -15.43198 -14.94396 -14.69103 -14.49006 -14.18820 -13.68606 -13.52953 -13.16878 -12.91468 -12.83157 -12.67569 -12.54100 -12.32542 -12.26302 -11.88664 -11.50599 -11.46464 -10.78797 -10.32586 -9.56482 -8.97209 -8.52172 -8.18827 -6.55378 0.33210 0.87341 1.32654 1.34228 1.47141 1.87919 2.22652 2.37253 2.92339 3.11572 3.73258 3.89064 3.99189 4.22842 4.25054 4.36781 4.46490 4.49927 4.59861 4.74103 4.80369 4.86620 4.92039 5.03947 5.11657 5.15519 5.28887 5.45584 5.50835 5.71005 5.79520 5.80359 6.04025 6.15820 6.27144 6.41339 6.57144 6.67716 6.70564 7.17715 8.69026 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.006550 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.549139 B = 4274.002752 C = 5115.136455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.021 3.979 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.050 0.950 9 C 0.253 3.747 10 N -0.472 5.472 11 C 0.044 3.956 12 C -0.190 4.190 13 C -0.024 4.024 14 C 0.075 3.925 15 N -0.854 5.854 16 C -0.126 4.126 17 C -0.078 4.078 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.147 4.147 21 C 0.071 3.929 22 H 0.273 0.727 23 H 0.033 0.967 24 H 0.018 0.982 25 H 0.170 0.830 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.349 0.651 31 H 0.347 0.653 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.041 -12.554 -0.714 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.180 4.180 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.592 4.592 8 H 0.068 0.932 9 C 0.133 3.867 10 N -0.151 5.151 11 C -0.084 4.084 12 C -0.198 4.198 13 C -0.063 4.063 14 C -0.056 4.056 15 N -0.385 5.385 16 C -0.131 4.131 17 C -0.096 4.096 18 C -0.172 4.172 19 C -0.125 4.125 20 C -0.168 4.168 21 C -0.037 4.037 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.187 0.813 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.210 -12.119 -0.226 14.104 hybrid contribution -1.200 1.480 -0.585 1.993 sum 6.010 -10.639 -0.812 12.247 Atomic orbital electron populations 1.70019 1.07401 1.28733 1.49735 1.25772 0.95768 1.02830 0.93644 0.85324 0.78492 0.78359 0.78438 1.19715 1.19423 1.19739 1.21546 0.93135 0.91323 1.53201 0.93219 1.19181 0.87255 0.82870 0.97370 1.44589 1.37249 1.28393 1.04887 1.21971 0.99303 0.95194 0.91921 1.20270 1.05174 1.02453 0.91883 1.19713 0.97835 0.91917 0.96795 1.21624 0.94449 0.92483 0.97048 1.58694 1.55436 1.07912 1.16485 1.19422 1.01215 0.98537 0.93963 1.20484 0.97994 0.98872 0.92263 1.20905 1.01204 0.99263 0.95783 1.21055 0.96390 0.95742 0.99327 1.20280 1.03845 1.02356 0.90321 1.18749 0.98586 0.97016 0.89359 0.91825 0.94915 0.96352 0.81261 0.90843 0.90790 0.91923 0.96086 0.83745 0.84007 0.84262 0.82971 0.83701 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.76 13.29 21.45 0.28 -52.47 16 2 C 0.02 1.14 5.46 84.65 0.46 1.60 16 3 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.30 9.39 25.60 0.24 -31.06 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.25 13.41 5.75 85.63 0.49 13.91 16 10 N -0.47 -22.11 2.76 -519.99 -1.44 -23.55 16 11 C 0.04 1.74 11.19 83.00 0.93 2.67 16 12 C -0.19 -6.70 5.57 -18.62 -0.10 -6.80 16 13 C -0.02 -0.64 6.01 29.85 0.18 -0.46 16 14 C 0.07 1.75 6.77 86.30 0.58 2.33 16 15 N -0.85 -15.76 9.62 -186.73 -1.80 -17.56 16 16 C -0.13 -4.83 6.35 -20.20 -0.13 -4.96 16 17 C -0.08 -2.43 10.05 22.23 0.22 -2.21 16 18 C -0.15 -4.35 9.97 22.04 0.22 -4.13 16 19 C -0.11 -3.41 10.01 22.30 0.22 -3.19 16 20 C -0.15 -6.07 10.00 22.37 0.22 -5.84 16 21 C 0.07 3.14 6.81 39.03 0.27 3.40 16 22 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 23 H 0.03 1.77 8.12 -2.39 -0.02 1.75 16 24 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.17 5.94 8.06 -2.91 -0.02 5.92 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.35 5.20 9.08 -89.69 -0.81 4.38 16 31 H 0.35 5.41 8.99 -89.70 -0.81 4.60 16 32 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -63.95 303.17 2.36 -61.59 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.53 Total: 21.24 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 3.81 Total: -34.74 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -2.95 Total: -93.58 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -63.95 2.36 -61.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082966425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.802 kcal (2) G-P(sol) polarization free energy of solvation -63.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds