Wall clock time and date at job start Mon Mar 30 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46895 * 2 1 4 4 C 1.52998 * 109.47449 * 120.00189 * 2 1 3 5 5 H 1.08988 * 109.47058 * 60.37340 * 4 2 1 6 6 C 1.50705 * 109.46903 * 180.37318 * 4 2 1 7 7 H 1.08002 * 119.99431 * 114.50581 * 6 4 2 8 8 C 1.37872 * 120.00195 * 294.51030 * 6 4 2 9 9 N 1.31517 * 120.00054 * 1.34048 * 8 6 4 10 10 Si 1.86797 * 120.00151 * 181.34916 * 8 6 4 11 11 H 1.48506 * 109.47117 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47684 * 119.99758 * 10 8 6 13 13 H 1.48502 * 109.46889 * 239.99918 * 10 8 6 14 14 C 1.50701 * 109.46783 * 300.37202 * 4 2 1 15 15 C 1.37863 * 120.02072 * 293.04516 * 14 4 2 16 16 C 1.38725 * 120.68785 * 180.02562 * 15 14 4 17 17 C 1.37754 * 120.27488 * 359.97438 * 16 15 14 18 18 C 1.39381 * 119.60500 * 359.97438 * 17 16 15 19 19 C 1.46785 * 134.34719 * 180.02562 * 18 17 16 20 20 C 1.33998 * 106.18535 * 180.02562 * 19 18 17 21 21 O 1.34443 * 110.15558 * 359.97438 * 20 19 18 22 22 C 1.34832 * 110.90346 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46554 * 296.04899 * 1 2 3 24 24 H 1.08999 * 109.47404 * 56.05178 * 1 2 3 25 25 H 1.08998 * 109.47375 * 176.05792 * 1 2 3 26 26 H 1.09004 * 109.47036 * 240.00343 * 2 1 3 27 27 H 1.09007 * 109.46763 * 171.19570 * 3 2 1 28 28 H 1.09008 * 109.46952 * 291.18839 * 3 2 1 29 29 H 1.08993 * 109.47152 * 51.19260 * 3 2 1 30 30 H 0.96994 * 120.00383 * 180.02562 * 9 8 6 31 31 H 1.07999 * 119.65608 * 0.02562 * 15 14 4 32 32 H 1.07997 * 119.85833 * 179.97438 * 16 15 14 33 33 H 1.08003 * 120.19682 * 179.72055 * 17 16 15 34 34 H 1.07999 * 126.91095 * 0.02562 * 19 18 17 35 35 H 1.07990 * 124.91960 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6823 -1.7507 1.2458 6 6 3.5471 -0.7132 1.2537 7 1 4.0818 -0.1689 2.0181 8 6 4.2431 -1.4005 0.2821 9 7 3.5921 -2.0414 -0.6640 10 14 6.1107 -1.4217 0.3095 11 1 6.5978 -0.6299 1.4677 12 1 6.5883 -2.8225 0.4311 13 1 6.6310 -0.8288 -0.9487 14 6 1.5302 -0.0162 2.4796 15 6 1.9692 1.2564 2.7771 16 6 1.5094 1.9180 3.9064 17 6 0.6043 1.3092 4.7477 18 6 0.1517 0.0232 4.4577 19 6 -0.7814 -0.9065 5.1053 20 6 -0.8030 -2.0069 4.3410 21 8 0.0185 -1.8555 3.2876 22 6 0.6172 -0.6477 3.3141 23 1 -0.3632 0.4513 0.9233 24 1 -0.3634 0.5739 -0.8525 25 1 -0.3634 -1.0252 -0.0706 26 1 1.8933 -0.5138 -0.8900 27 1 3.1186 1.4466 0.1573 28 1 1.8108 1.9089 -0.9583 29 1 1.5539 1.9997 0.8008 30 1 4.0817 -2.5253 -1.3474 31 1 2.6784 1.7432 2.1242 32 1 1.8625 2.9145 4.1268 33 1 0.2506 1.8237 5.6289 34 1 -1.3385 -0.7377 6.0150 35 1 -1.3947 -2.8877 4.5420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084394250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:06 Heat of formation + Delta-G solvation = 16.701304 kcal Electronic energy + Delta-G solvation = -17893.349547 eV Core-core repulsion = 15243.412629 eV Total energy + Delta-G solvation = -2649.936918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.83927 -37.98792 -35.49106 -32.17194 -31.82167 -29.98167 -28.80902 -26.82454 -26.16811 -23.48343 -22.19995 -21.42536 -20.47652 -18.48591 -16.78979 -16.49148 -16.10912 -15.44568 -14.89367 -14.48165 -13.89672 -13.30966 -13.28905 -12.67623 -12.43923 -12.28199 -12.20036 -11.55717 -11.48175 -11.35011 -10.94427 -10.92775 -10.87572 -10.47035 -10.04281 -9.85175 -9.73373 -9.40969 -9.03314 -8.87849 -8.36538 -7.91168 -7.36743 -6.01122 -4.05648 1.57056 2.03197 2.89673 3.29094 3.37747 3.41497 3.42574 4.36415 4.47903 4.92871 5.20598 5.30857 5.53833 5.67043 5.73319 5.92528 6.12525 6.16789 6.20279 6.28789 6.34403 6.54601 6.55136 6.75290 6.79522 6.86426 6.97347 6.98449 7.02313 7.15119 7.33719 7.46571 7.50526 7.76688 7.77836 7.95296 8.05998 8.37855 8.96197 9.57203 11.05751 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.008218 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.803004 B = 3406.283321 C = 3435.878628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.141 4.141 4 C 0.082 3.918 5 H 0.040 0.960 6 C -0.504 4.504 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.886 5.886 10 Si 0.888 3.112 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.011 4.011 15 C -0.103 4.103 16 C -0.136 4.136 17 C -0.108 4.108 18 C -0.140 4.140 19 C -0.224 4.224 20 C -0.001 4.001 21 O -0.188 6.188 22 C 0.050 3.950 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.042 0.958 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.260 0.740 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 4.217 7.096 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.198 4.198 4 C 0.064 3.936 5 H 0.059 0.941 6 C -0.542 4.542 7 H 0.077 0.923 8 C -0.138 4.138 9 N -0.525 5.525 10 Si 0.716 3.284 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.012 4.012 15 C -0.121 4.121 16 C -0.154 4.154 17 C -0.126 4.126 18 C -0.141 4.141 19 C -0.243 4.243 20 C -0.067 4.067 21 O -0.089 6.089 22 C 0.003 3.997 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.166 0.834 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.800 3.913 6.720 10.330 hybrid contribution 0.823 -0.104 0.245 0.865 sum -5.977 3.809 6.965 9.937 Atomic orbital electron populations 1.21916 0.98748 1.00075 0.99373 1.21076 0.91402 0.95448 1.02170 1.22067 1.02164 0.97075 0.98519 1.17913 0.95376 0.94372 0.85976 0.94142 1.21122 0.89929 1.31347 1.11832 0.92257 1.24935 0.98138 0.95222 0.95461 1.69915 1.35086 1.33162 1.14313 0.86588 0.86048 0.77810 0.77929 1.19701 1.21087 1.21027 1.19599 0.91633 0.93355 0.96604 1.21167 1.00306 0.93848 0.96733 1.20997 0.98764 0.99934 0.95705 1.20214 0.99228 0.93204 0.99970 1.19888 1.00918 0.96372 0.96902 1.22373 1.04442 0.94583 1.02890 1.23838 0.95366 1.00070 0.87409 1.84051 1.49088 1.33206 1.42572 1.19658 0.98451 0.84081 0.97490 0.94355 0.94635 0.93845 0.88632 0.91466 0.95566 0.93779 0.93000 0.83922 0.86411 0.86864 0.83425 0.78470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.01 37.16 0.33 -2.62 16 2 C -0.08 -1.88 2.59 -90.62 -0.23 -2.12 16 3 C -0.14 -2.90 7.51 37.16 0.28 -2.62 16 4 C 0.08 2.03 1.83 -92.92 -0.17 1.86 16 5 H 0.04 1.13 7.81 -51.94 -0.41 0.73 16 6 C -0.50 -13.35 6.60 -34.44 -0.23 -13.57 16 7 H 0.06 1.57 7.29 -52.49 -0.38 1.18 16 8 C 0.06 1.73 5.34 -17.82 -0.10 1.63 16 9 N -0.89 -24.80 11.68 55.43 0.65 -24.16 16 10 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C -0.01 -0.25 3.44 -104.52 -0.36 -0.61 16 15 C -0.10 -2.02 6.76 -39.54 -0.27 -2.29 16 16 C -0.14 -2.30 10.03 -39.58 -0.40 -2.70 16 17 C -0.11 -1.81 10.10 -39.33 -0.40 -2.21 16 18 C -0.14 -2.60 6.40 -105.16 -0.67 -3.27 16 19 C -0.22 -3.43 11.14 -37.62 -0.42 -3.85 16 20 C 0.00 -0.02 11.96 29.24 0.35 0.33 16 21 O -0.19 -3.82 10.40 3.86 0.04 -3.78 16 22 C 0.05 1.06 6.91 -38.49 -0.27 0.79 16 23 H 0.04 0.77 6.96 -51.93 -0.36 0.41 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.10 2.47 6.48 -51.93 -0.34 2.14 16 27 H 0.07 1.45 6.50 -51.93 -0.34 1.12 16 28 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 29 H 0.04 0.83 5.48 -51.93 -0.28 0.55 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.14 2.77 5.41 -52.49 -0.28 2.48 16 32 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.20 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -29.19 283.44 -7.09 -36.28 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.49 Total: 2.69 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -2.54 Total: -31.24 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.65 Total: -24.16 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.19 -7.09 -36.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084394250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.985 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds