Wall clock time and date at job start Mon Mar 30 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46895 * 2 1 4 4 C 1.52998 * 109.47449 * 120.00189 * 2 1 3 5 5 H 1.08988 * 109.47058 * 60.37340 * 4 2 1 6 6 C 1.50705 * 109.46903 * 180.37318 * 4 2 1 7 7 H 1.08002 * 119.99431 * 114.50581 * 6 4 2 8 8 C 1.37872 * 120.00195 * 294.51030 * 6 4 2 9 9 N 1.31517 * 120.00054 * 1.34048 * 8 6 4 10 10 Si 1.86797 * 120.00151 * 181.34916 * 8 6 4 11 11 H 1.48506 * 109.47117 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47684 * 119.99758 * 10 8 6 13 13 H 1.48502 * 109.46889 * 239.99918 * 10 8 6 14 14 C 1.50701 * 109.46783 * 300.37202 * 4 2 1 15 15 C 1.37863 * 120.02072 * 293.04516 * 14 4 2 16 16 C 1.38725 * 120.68785 * 180.02562 * 15 14 4 17 17 C 1.37754 * 120.27488 * 359.97438 * 16 15 14 18 18 C 1.39381 * 119.60500 * 359.97438 * 17 16 15 19 19 C 1.46785 * 134.34719 * 180.02562 * 18 17 16 20 20 C 1.33998 * 106.18535 * 180.02562 * 19 18 17 21 21 O 1.34443 * 110.15558 * 359.97438 * 20 19 18 22 22 C 1.34832 * 110.90346 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46554 * 296.04899 * 1 2 3 24 24 H 1.08999 * 109.47404 * 56.05178 * 1 2 3 25 25 H 1.08998 * 109.47375 * 176.05792 * 1 2 3 26 26 H 1.09004 * 109.47036 * 240.00343 * 2 1 3 27 27 H 1.09007 * 109.46763 * 171.19570 * 3 2 1 28 28 H 1.09008 * 109.46952 * 291.18839 * 3 2 1 29 29 H 1.08993 * 109.47152 * 51.19260 * 3 2 1 30 30 H 0.96994 * 120.00383 * 180.02562 * 9 8 6 31 31 H 1.07999 * 119.65608 * 0.02562 * 15 14 4 32 32 H 1.07997 * 119.85833 * 179.97438 * 16 15 14 33 33 H 1.08003 * 120.19682 * 179.72055 * 17 16 15 34 34 H 1.07999 * 126.91095 * 0.02562 * 19 18 17 35 35 H 1.07990 * 124.91960 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6823 -1.7507 1.2458 6 6 3.5471 -0.7132 1.2537 7 1 4.0818 -0.1689 2.0181 8 6 4.2431 -1.4005 0.2821 9 7 3.5921 -2.0414 -0.6640 10 14 6.1107 -1.4217 0.3095 11 1 6.5978 -0.6299 1.4677 12 1 6.5883 -2.8225 0.4311 13 1 6.6310 -0.8288 -0.9487 14 6 1.5302 -0.0162 2.4796 15 6 1.9692 1.2564 2.7771 16 6 1.5094 1.9180 3.9064 17 6 0.6043 1.3092 4.7477 18 6 0.1517 0.0232 4.4577 19 6 -0.7814 -0.9065 5.1053 20 6 -0.8030 -2.0069 4.3410 21 8 0.0185 -1.8555 3.2876 22 6 0.6172 -0.6477 3.3141 23 1 -0.3632 0.4513 0.9233 24 1 -0.3634 0.5739 -0.8525 25 1 -0.3634 -1.0252 -0.0706 26 1 1.8933 -0.5138 -0.8900 27 1 3.1186 1.4466 0.1573 28 1 1.8108 1.9089 -0.9583 29 1 1.5539 1.9997 0.8008 30 1 4.0817 -2.5253 -1.3474 31 1 2.6784 1.7432 2.1242 32 1 1.8625 2.9145 4.1268 33 1 0.2506 1.8237 5.6289 34 1 -1.3385 -0.7377 6.0150 35 1 -1.3947 -2.8877 4.5420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084394250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:06 Heat of formation + Delta-G solvation = 1.335854 kcal Electronic energy + Delta-G solvation = -17894.015843 eV Core-core repulsion = 15243.412629 eV Total energy + Delta-G solvation = -2650.603214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.20734 -39.55935 -37.10893 -34.11896 -33.26912 -31.48679 -30.20898 -28.64716 -27.82743 -25.32479 -23.62753 -22.84202 -21.93442 -20.20586 -18.33230 -18.06997 -17.71124 -16.90435 -16.66477 -15.98023 -15.58210 -14.91996 -14.88311 -14.30803 -14.05781 -13.85664 -13.51696 -13.26923 -13.00246 -12.83302 -12.76009 -12.64610 -12.52510 -12.18764 -11.82083 -11.62683 -11.52445 -11.01694 -10.75355 -10.66368 -10.39668 -9.32801 -8.79776 -8.06855 -6.18376 0.21490 0.60836 1.39518 1.42113 1.52733 1.62532 2.15677 2.43913 2.97390 3.22391 3.72083 3.92706 4.24852 4.34028 4.48034 4.49788 4.53060 4.58397 4.67304 4.75366 4.90649 4.92152 5.02567 5.12180 5.19698 5.26205 5.41040 5.45093 5.60516 5.68136 5.69286 5.76363 5.77766 5.98904 6.00539 6.13443 6.38060 6.46547 6.89698 7.47197 8.98752 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.023909 B = 0.008218 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.803004 B = 3406.283321 C = 3435.878628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.130 4.130 4 C 0.089 3.911 5 H -0.012 1.012 6 C -0.510 4.510 7 H 0.055 0.945 8 C 0.016 3.984 9 N -0.917 5.917 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.278 1.278 14 C -0.044 4.044 15 C -0.111 4.111 16 C -0.132 4.132 17 C -0.099 4.099 18 C -0.152 4.152 19 C -0.218 4.218 20 C -0.007 4.007 21 O -0.225 6.225 22 C 0.013 3.987 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.259 0.741 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.189 0.811 35 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 5.979 9.271 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C -0.187 4.187 4 C 0.070 3.930 5 H 0.007 0.993 6 C -0.548 4.548 7 H 0.073 0.927 8 C -0.183 4.183 9 N -0.557 5.557 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.213 1.213 13 H -0.204 1.204 14 C -0.044 4.044 15 C -0.129 4.129 16 C -0.150 4.150 17 C -0.117 4.117 18 C -0.153 4.153 19 C -0.237 4.237 20 C -0.071 4.071 21 O -0.127 6.127 22 C -0.034 4.034 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.174 0.826 33 H 0.171 0.829 34 H 0.206 0.794 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.558 5.686 8.907 12.992 hybrid contribution 0.978 -0.687 -0.341 1.243 sum -6.579 4.999 8.566 11.902 Atomic orbital electron populations 1.21762 0.96975 0.99654 1.00445 1.20944 0.92961 0.96439 0.99748 1.21935 1.01094 0.95581 1.00096 1.17647 0.94428 0.92223 0.88674 0.99340 1.21377 0.91276 1.30854 1.11321 0.92676 1.25671 1.02263 0.95118 0.95254 1.70060 1.36544 1.34062 1.14987 0.85645 0.81122 0.77587 0.78206 1.18955 1.21255 1.20365 1.19413 0.93857 0.94723 0.96453 1.21222 1.00434 0.93196 0.98038 1.21365 0.98145 1.01250 0.94258 1.20716 0.97902 0.92400 1.00671 1.20408 1.01312 0.97369 0.96197 1.22823 1.03670 0.93323 1.03851 1.24830 0.94443 1.01900 0.85901 1.84025 1.50330 1.33461 1.44887 1.19891 0.99509 0.85060 0.98896 0.94012 0.92336 0.95267 0.92293 0.93067 0.93919 0.91967 0.93144 0.84318 0.82624 0.82892 0.79407 0.74080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 9.01 71.98 0.65 -4.86 16 2 C -0.08 -3.91 2.59 -10.79 -0.03 -3.94 16 3 C -0.13 -5.36 7.51 71.98 0.54 -4.82 16 4 C 0.09 4.63 1.83 -12.28 -0.02 4.61 16 5 H -0.01 -0.71 7.81 -2.39 -0.02 -0.73 16 6 C -0.51 -28.12 6.60 25.60 0.17 -27.95 16 7 H 0.06 3.00 7.29 -2.91 -0.02 2.98 16 8 C 0.02 0.87 5.34 84.65 0.45 1.32 16 9 N -0.92 -53.77 11.68 21.45 0.25 -53.52 16 10 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 C -0.04 -1.99 3.44 -19.80 -0.07 -2.06 16 15 C -0.11 -4.30 6.76 22.30 0.15 -4.15 16 16 C -0.13 -4.09 10.03 22.27 0.22 -3.87 16 17 C -0.10 -2.97 10.10 22.43 0.23 -2.74 16 18 C -0.15 -5.32 6.40 -20.21 -0.13 -5.45 16 19 C -0.22 -6.00 11.14 23.54 0.26 -5.74 16 20 C -0.01 -0.19 11.96 66.85 0.80 0.61 16 21 O -0.22 -9.33 10.40 -9.10 -0.09 -9.43 16 22 C 0.01 0.55 6.91 22.98 0.16 0.71 16 23 H 0.04 1.70 6.96 -2.39 -0.02 1.69 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 3.23 6.48 -2.39 -0.02 3.21 16 27 H 0.05 2.24 6.50 -2.38 -0.02 2.23 16 28 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.06 2.31 5.48 -2.39 -0.01 2.30 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.14 5.34 5.41 -2.91 -0.02 5.32 16 32 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.19 3.51 8.06 -2.91 -0.02 3.48 16 35 H 0.24 4.24 8.06 -2.92 -0.02 4.21 16 Total: -1.00 -67.29 283.44 6.65 -60.64 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.08 Total: 14.59 kcal Atomic # 6 Polarization: -61.70 SS G_CDS: 3.38 Total: -58.32 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.25 Total: -53.52 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.09 Total: -9.43 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -67.29 6.65 -60.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084394250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.980 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds