Wall clock time and date at job start Mon Mar 30 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46869 * 2 1 4 4 C 1.53003 * 109.46726 * 119.99547 * 2 1 3 5 5 H 1.08997 * 109.47499 * 302.86543 * 4 2 1 6 6 C 1.50697 * 109.47031 * 182.86323 * 4 2 1 7 7 H 1.08003 * 119.99943 * 333.36598 * 6 4 2 8 8 C 1.37877 * 120.00310 * 153.37289 * 6 4 2 9 9 N 1.31510 * 120.00105 * 173.24380 * 8 6 4 10 10 Si 1.86797 * 119.99649 * 353.24021 * 8 6 4 11 11 H 1.48501 * 109.47174 * 84.72286 * 10 8 6 12 12 H 1.48503 * 109.47133 * 204.71833 * 10 8 6 13 13 H 1.48499 * 109.47589 * 324.72131 * 10 8 6 14 14 C 1.50704 * 109.47144 * 62.86566 * 4 2 1 15 15 C 1.37856 * 120.02354 * 59.97252 * 14 4 2 16 16 C 1.38716 * 120.69128 * 180.08967 * 15 14 4 17 17 C 1.37754 * 120.27631 * 359.90107 * 16 15 14 18 18 C 1.39380 * 119.60234 * 0.06866 * 17 16 15 19 19 C 1.46784 * 134.34833 * 179.97438 * 18 17 16 20 20 C 1.33989 * 106.18705 * 180.02562 * 19 18 17 21 21 O 1.34447 * 110.15948 * 0.02562 * 20 19 18 22 22 C 1.34835 * 110.89790 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47276 * 300.00473 * 1 2 3 24 24 H 1.08998 * 109.46857 * 60.00124 * 1 2 3 25 25 H 1.08993 * 109.47128 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47002 * 239.99070 * 2 1 3 27 27 H 1.09004 * 109.46746 * 185.73089 * 3 2 1 28 28 H 1.08994 * 109.47087 * 305.72101 * 3 2 1 29 29 H 1.08994 * 109.47835 * 65.72710 * 3 2 1 30 30 H 0.97003 * 120.00018 * 180.02562 * 9 8 6 31 31 H 1.08008 * 119.65280 * 0.02562 * 15 14 4 32 32 H 1.08009 * 119.85942 * 179.97438 * 16 15 14 33 33 H 1.08010 * 120.19739 * 180.34256 * 17 16 15 34 34 H 1.08010 * 126.90539 * 0.07120 * 19 18 17 35 35 H 1.08001 * 124.91985 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6353 -0.2378 2.1385 6 6 3.5453 -0.6601 1.2854 7 1 4.1042 -0.5674 0.3659 8 6 4.2091 -0.7226 2.4922 9 7 5.5215 -0.8033 2.5174 10 14 3.2443 -0.6926 4.0915 11 1 2.7935 -2.0680 4.4235 12 1 4.1107 -0.1787 5.1827 13 1 2.0618 0.1928 3.9397 14 6 1.5964 -2.1610 1.2144 15 6 1.9872 -2.9782 0.1752 16 6 1.5855 -4.3051 0.1282 17 6 0.7894 -4.8254 1.1248 18 6 0.3878 -4.0100 2.1815 19 6 -0.4341 -4.2144 3.3803 20 6 -0.4578 -3.0384 4.0219 21 8 0.2628 -2.1269 3.3456 22 6 0.7928 -2.6653 2.2287 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 3.1252 1.4442 -0.1026 28 1 1.5954 1.9850 -0.8343 29 1 1.7629 1.9259 0.9367 30 1 5.9885 -0.8477 3.3664 31 1 2.6119 -2.5808 -0.6112 32 1 1.8992 -4.9332 -0.6925 33 1 0.4819 -5.8602 1.0898 34 1 -0.9211 -5.1292 3.6845 35 1 -0.9802 -2.8499 4.9482 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084394252.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:08 Heat of formation + Delta-G solvation = 12.224903 kcal Electronic energy + Delta-G solvation = -18011.445162 eV Core-core repulsion = 15361.314132 eV Total energy + Delta-G solvation = -2650.131030 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.86046 -37.84163 -35.67047 -32.36715 -32.07565 -30.15148 -28.78651 -27.34677 -26.13646 -23.20626 -22.09509 -21.81192 -20.35806 -18.63406 -17.10849 -16.60502 -16.40143 -15.59270 -14.98579 -14.38507 -13.93767 -13.52428 -13.22626 -12.81515 -12.46058 -12.37772 -12.17251 -12.04645 -11.53722 -11.50460 -11.19129 -11.16857 -10.86868 -10.44967 -10.25356 -9.95303 -9.86725 -9.54831 -9.27184 -8.99126 -8.56159 -7.93991 -7.38672 -6.10660 -4.08898 1.56660 2.03479 2.88458 3.26887 3.37569 3.45118 3.53013 4.40297 4.44861 4.91661 5.11513 5.28879 5.51563 5.65867 5.71991 5.76257 5.83822 5.89222 5.99822 6.13519 6.25228 6.30372 6.46123 6.54500 6.58640 6.66809 6.76141 6.78699 6.98085 7.00285 7.10795 7.15969 7.25292 7.32084 7.51689 7.70665 7.82668 8.47345 8.92718 9.52702 11.01083 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.017823 B = 0.012082 C = 0.010138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.641651 B = 2316.858015 C = 2761.280249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.130 4.130 4 C 0.040 3.960 5 H 0.048 0.952 6 C -0.499 4.499 7 H 0.079 0.921 8 C 0.078 3.922 9 N -0.894 5.894 10 Si 0.864 3.136 11 H -0.272 1.272 12 H -0.292 1.292 13 H -0.260 1.260 14 C -0.016 4.016 15 C -0.090 4.090 16 C -0.130 4.130 17 C -0.109 4.109 18 C -0.136 4.136 19 C -0.220 4.220 20 C -0.004 4.004 21 O -0.193 6.193 22 C 0.042 3.958 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.310 -4.071 -1.289 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.188 4.188 4 C 0.021 3.979 5 H 0.066 0.934 6 C -0.536 4.536 7 H 0.097 0.903 8 C -0.125 4.125 9 N -0.531 5.531 10 Si 0.692 3.308 11 H -0.198 1.198 12 H -0.218 1.218 13 H -0.185 1.185 14 C -0.017 4.017 15 C -0.108 4.108 16 C -0.148 4.148 17 C -0.128 4.128 18 C -0.136 4.136 19 C -0.239 4.239 20 C -0.070 4.070 21 O -0.095 6.095 22 C -0.004 4.004 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.167 0.833 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -11.084 -3.792 -1.095 11.766 hybrid contribution -0.427 -0.436 1.241 1.383 sum -11.511 -4.228 0.146 12.264 Atomic orbital electron populations 1.21912 0.97383 1.00795 1.00325 1.21025 0.93069 0.96456 0.98796 1.21668 1.02208 0.95390 0.99488 1.18493 0.97238 0.86641 0.95492 0.93435 1.20841 0.87884 1.50095 0.94742 0.90273 1.24983 0.94628 0.93991 0.98863 1.69900 1.07141 1.49693 1.26389 0.86988 0.80267 0.79666 0.83908 1.19768 1.21806 1.18460 1.19807 0.91634 1.00358 0.89930 1.20710 0.99263 0.92563 0.98303 1.20958 0.99230 0.95814 0.98841 1.20208 1.00313 0.98455 0.93787 1.19873 1.02114 0.94472 0.97188 1.22378 1.05774 0.99088 0.96700 1.23820 0.97082 0.88076 0.98017 1.84033 1.55313 1.38708 1.31418 1.19646 0.99937 0.91886 0.88968 0.93492 0.93863 0.93415 0.92019 0.91375 0.94876 0.93674 0.92640 0.85023 0.86277 0.86756 0.83303 0.78518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.98 37.16 0.33 -2.22 16 2 C -0.07 -1.48 2.36 -90.62 -0.21 -1.69 16 3 C -0.13 -2.46 8.78 37.16 0.33 -2.14 16 4 C 0.04 0.94 1.16 -92.92 -0.11 0.83 16 5 H 0.05 1.19 5.02 -51.93 -0.26 0.92 16 6 C -0.50 -13.41 7.24 -34.44 -0.25 -13.66 16 7 H 0.08 2.26 7.91 -52.48 -0.42 1.85 16 8 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 9 N -0.89 -27.09 13.96 55.43 0.77 -26.32 16 10 Si 0.86 22.44 25.42 -169.99 -4.32 18.12 16 11 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 13 H -0.26 -6.54 6.33 56.52 0.36 -6.18 16 14 C -0.02 -0.36 3.40 -104.52 -0.36 -0.72 16 15 C -0.09 -1.82 8.76 -39.54 -0.35 -2.16 16 16 C -0.13 -2.28 10.03 -39.58 -0.40 -2.68 16 17 C -0.11 -1.91 10.10 -39.33 -0.40 -2.31 16 18 C -0.14 -2.63 6.40 -105.16 -0.67 -3.30 16 19 C -0.22 -3.57 11.14 -37.62 -0.42 -3.99 16 20 C 0.00 -0.07 11.96 29.24 0.35 0.28 16 21 O -0.19 -4.07 9.20 3.84 0.04 -4.04 16 22 C 0.04 0.92 6.43 -38.49 -0.25 0.67 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.84 7.31 -51.93 -0.38 0.46 16 26 H 0.06 1.19 7.28 -51.93 -0.38 0.81 16 27 H 0.07 1.39 7.26 -51.93 -0.38 1.02 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.13 2.55 7.52 -52.48 -0.39 2.15 16 32 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 286.74 15.07 4.32 4.32 Total: -1.00 -31.16 286.74 -6.45 -37.61 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.77 Total: 1.25 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: -2.49 Total: -30.95 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.77 Total: -26.32 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.32 Total: 18.12 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.16 -6.45 -37.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084394252.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.838 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds