Wall clock time and date at job start Mon Mar 30 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46869 * 2 1 4 4 C 1.53003 * 109.46726 * 119.99547 * 2 1 3 5 5 H 1.08997 * 109.47499 * 302.86543 * 4 2 1 6 6 C 1.50697 * 109.47031 * 182.86323 * 4 2 1 7 7 H 1.08003 * 119.99943 * 333.36598 * 6 4 2 8 8 C 1.37877 * 120.00310 * 153.37289 * 6 4 2 9 9 N 1.31510 * 120.00105 * 173.24380 * 8 6 4 10 10 Si 1.86797 * 119.99649 * 353.24021 * 8 6 4 11 11 H 1.48501 * 109.47174 * 84.72286 * 10 8 6 12 12 H 1.48503 * 109.47133 * 204.71833 * 10 8 6 13 13 H 1.48499 * 109.47589 * 324.72131 * 10 8 6 14 14 C 1.50704 * 109.47144 * 62.86566 * 4 2 1 15 15 C 1.37856 * 120.02354 * 59.97252 * 14 4 2 16 16 C 1.38716 * 120.69128 * 180.08967 * 15 14 4 17 17 C 1.37754 * 120.27631 * 359.90107 * 16 15 14 18 18 C 1.39380 * 119.60234 * 0.06866 * 17 16 15 19 19 C 1.46784 * 134.34833 * 179.97438 * 18 17 16 20 20 C 1.33989 * 106.18705 * 180.02562 * 19 18 17 21 21 O 1.34447 * 110.15948 * 0.02562 * 20 19 18 22 22 C 1.34835 * 110.89790 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47276 * 300.00473 * 1 2 3 24 24 H 1.08998 * 109.46857 * 60.00124 * 1 2 3 25 25 H 1.08993 * 109.47128 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47002 * 239.99070 * 2 1 3 27 27 H 1.09004 * 109.46746 * 185.73089 * 3 2 1 28 28 H 1.08994 * 109.47087 * 305.72101 * 3 2 1 29 29 H 1.08994 * 109.47835 * 65.72710 * 3 2 1 30 30 H 0.97003 * 120.00018 * 180.02562 * 9 8 6 31 31 H 1.08008 * 119.65280 * 0.02562 * 15 14 4 32 32 H 1.08009 * 119.85942 * 179.97438 * 16 15 14 33 33 H 1.08010 * 120.19739 * 180.34256 * 17 16 15 34 34 H 1.08010 * 126.90539 * 0.07120 * 19 18 17 35 35 H 1.08001 * 124.91985 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6353 -0.2378 2.1385 6 6 3.5453 -0.6601 1.2854 7 1 4.1042 -0.5674 0.3659 8 6 4.2091 -0.7226 2.4922 9 7 5.5215 -0.8033 2.5174 10 14 3.2443 -0.6926 4.0915 11 1 2.7935 -2.0680 4.4235 12 1 4.1107 -0.1787 5.1827 13 1 2.0618 0.1928 3.9397 14 6 1.5964 -2.1610 1.2144 15 6 1.9872 -2.9782 0.1752 16 6 1.5855 -4.3051 0.1282 17 6 0.7894 -4.8254 1.1248 18 6 0.3878 -4.0100 2.1815 19 6 -0.4341 -4.2144 3.3803 20 6 -0.4578 -3.0384 4.0219 21 8 0.2628 -2.1269 3.3456 22 6 0.7928 -2.6653 2.2287 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 3.1252 1.4442 -0.1026 28 1 1.5954 1.9850 -0.8343 29 1 1.7629 1.9259 0.9367 30 1 5.9885 -0.8477 3.3664 31 1 2.6119 -2.5808 -0.6112 32 1 1.8992 -4.9332 -0.6925 33 1 0.4819 -5.8602 1.0898 34 1 -0.9211 -5.1292 3.6845 35 1 -0.9802 -2.8499 4.9482 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084394252.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:08 Heat of formation + Delta-G solvation = -5.673164 kcal Electronic energy + Delta-G solvation = -18012.221280 eV Core-core repulsion = 15361.314132 eV Total energy + Delta-G solvation = -2650.907148 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.26190 -39.39269 -37.23150 -34.41973 -33.51916 -31.67175 -30.19615 -29.10220 -27.66324 -25.01613 -23.57133 -23.26598 -21.76049 -20.27327 -19.05846 -18.12610 -17.84374 -17.09247 -16.43687 -16.31568 -15.46846 -15.22277 -14.68198 -14.47689 -14.10265 -13.96132 -13.81761 -13.46585 -13.04216 -13.00164 -12.91189 -12.77264 -12.57722 -12.03218 -11.94736 -11.85749 -11.51289 -11.26486 -10.92074 -10.77269 -10.66426 -9.39034 -8.84338 -8.32264 -6.30119 0.17125 0.56682 1.23463 1.28376 1.36229 1.57683 2.09134 2.29860 2.90631 3.07163 3.67300 3.86063 4.10417 4.25417 4.29367 4.34582 4.47673 4.49197 4.62387 4.69961 4.85202 4.88316 4.94840 5.00806 5.08935 5.17314 5.25232 5.36433 5.44160 5.53644 5.56703 5.64396 5.66537 5.75028 5.83357 5.94774 6.33172 6.38258 6.74212 7.33126 8.83235 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.017823 B = 0.012082 C = 0.010138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.641651 B = 2316.858015 C = 2761.280249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.127 4.127 4 C 0.044 3.956 5 H 0.028 0.972 6 C -0.481 4.481 7 H 0.050 0.950 8 C 0.026 3.974 9 N -0.941 5.941 10 Si 0.916 3.084 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.252 1.252 14 C -0.046 4.046 15 C -0.105 4.105 16 C -0.130 4.130 17 C -0.102 4.102 18 C -0.153 4.153 19 C -0.216 4.216 20 C -0.012 4.012 21 O -0.224 6.224 22 C 0.009 3.991 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.263 0.737 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.189 0.811 35 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 -5.632 -1.210 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 C -0.184 4.184 4 C 0.025 3.975 5 H 0.046 0.954 6 C -0.518 4.518 7 H 0.069 0.931 8 C -0.172 4.172 9 N -0.581 5.581 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.177 1.177 14 C -0.047 4.047 15 C -0.123 4.123 16 C -0.147 4.147 17 C -0.120 4.120 18 C -0.154 4.154 19 C -0.235 4.235 20 C -0.076 4.076 21 O -0.126 6.126 22 C -0.037 4.037 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.206 0.794 35 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -13.733 -5.350 -1.022 14.774 hybrid contribution 0.313 -0.022 1.135 1.177 sum -13.421 -5.372 0.112 14.456 Atomic orbital electron populations 1.21784 0.95100 1.00879 1.01513 1.21017 0.94992 0.96318 0.97134 1.21628 1.00746 0.95468 1.00601 1.18369 0.94362 0.88472 0.96282 0.95365 1.21055 0.90135 1.47461 0.93189 0.93140 1.25597 0.95186 0.94798 1.01637 1.70013 1.08499 1.52803 1.26820 0.86150 0.79260 0.79230 0.80991 1.20458 1.21736 1.17659 1.19636 0.93953 0.99418 0.91688 1.20858 0.99507 0.93967 0.97939 1.21327 0.98545 0.94911 0.99958 1.20706 0.98811 0.99973 0.92517 1.20427 1.02456 0.93736 0.98742 1.22836 1.04991 1.00565 0.95102 1.24839 0.96162 0.87579 0.98972 1.83995 1.56314 1.40591 1.31719 1.19853 1.01041 0.93370 0.89439 0.93871 0.90983 0.93896 0.91870 0.93894 0.91456 0.94304 0.92824 0.85530 0.82767 0.82925 0.79377 0.74009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 8.98 71.98 0.65 -3.88 16 2 C -0.08 -2.99 2.36 -10.79 -0.03 -3.02 16 3 C -0.13 -4.79 8.78 71.98 0.63 -4.16 16 4 C 0.04 2.08 1.16 -12.28 -0.01 2.07 16 5 H 0.03 1.43 5.02 -2.39 -0.01 1.42 16 6 C -0.48 -26.85 7.24 25.60 0.19 -26.67 16 7 H 0.05 3.04 7.91 -2.91 -0.02 3.02 16 8 C 0.03 1.51 5.47 84.66 0.46 1.97 16 9 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 10 Si 0.92 47.74 25.42 68.60 1.74 49.48 16 11 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 12 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 13 H -0.25 -12.63 6.33 99.48 0.63 -12.00 16 14 C -0.05 -2.05 3.40 -19.80 -0.07 -2.11 16 15 C -0.10 -4.17 8.76 22.29 0.20 -3.98 16 16 C -0.13 -4.23 10.03 22.27 0.22 -4.01 16 17 C -0.10 -3.23 10.10 22.43 0.23 -3.00 16 18 C -0.15 -5.54 6.40 -20.21 -0.13 -5.67 16 19 C -0.22 -6.21 11.14 23.54 0.26 -5.94 16 20 C -0.01 -0.35 11.96 66.85 0.80 0.45 16 21 O -0.22 -9.16 9.20 -9.18 -0.08 -9.25 16 22 C 0.01 0.40 6.43 22.98 0.15 0.55 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.46 7.31 -2.39 -0.02 1.44 16 26 H 0.06 2.44 7.28 -2.39 -0.02 2.42 16 27 H 0.04 1.80 7.26 -2.38 -0.02 1.78 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.13 4.99 7.52 -2.91 -0.02 4.97 16 32 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.24 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -70.34 286.74 6.50 -63.85 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.99 Total: 12.26 kcal Atomic # 6 Polarization: -60.94 SS G_CDS: 3.55 Total: -57.39 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.30 Total: -58.95 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.08 Total: -9.25 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.74 Total: 49.48 kcal Total: -70.34 6.50 -63.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084394252.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.175 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds