Wall clock time and date at job start Mon Mar 30 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47160 * 2 1 4 4 C 1.53002 * 109.47121 * 119.99650 * 2 1 3 5 5 H 1.09004 * 109.47491 * 297.13652 * 4 2 1 6 6 C 1.50701 * 109.46843 * 57.13137 * 4 2 1 7 7 H 1.07998 * 120.00254 * 32.23295 * 6 4 2 8 8 C 1.37879 * 119.99868 * 212.22812 * 6 4 2 9 9 N 1.31519 * 120.00460 * 3.30147 * 8 6 4 10 10 Si 1.86803 * 120.00162 * 183.29874 * 8 6 4 11 11 H 1.48505 * 109.47076 * 270.00439 * 10 8 6 12 12 H 1.48502 * 109.47428 * 150.00369 * 10 8 6 13 13 H 1.48503 * 109.46822 * 30.00036 * 10 8 6 14 14 C 1.50704 * 109.47393 * 177.12953 * 4 2 1 15 15 C 1.38739 * 119.79108 * 299.73028 * 14 4 2 16 16 C 1.37853 * 120.68367 * 179.73843 * 15 14 4 17 17 C 1.38941 * 119.81426 * 0.54977 * 16 15 14 18 18 O 1.34809 * 133.49162 * 179.72783 * 17 16 15 19 19 C 1.34451 * 110.88713 * 179.97438 * 18 17 16 20 20 C 1.33992 * 110.15593 * 0.02562 * 19 18 17 21 21 C 1.40486 * 119.22474 * 359.70818 * 17 16 15 22 22 C 1.36740 * 119.78804 * 119.99929 * 14 4 2 23 23 H 1.08994 * 109.47388 * 303.85248 * 1 2 3 24 24 H 1.08996 * 109.46790 * 63.85657 * 1 2 3 25 25 H 1.09005 * 109.46912 * 183.85120 * 1 2 3 26 26 H 1.09004 * 109.47415 * 239.99469 * 2 1 3 27 27 H 1.09005 * 109.47507 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46941 * 299.99502 * 3 2 1 29 29 H 1.09004 * 109.47390 * 59.99454 * 3 2 1 30 30 H 0.97005 * 119.99333 * 353.63150 * 9 8 6 31 31 H 1.08000 * 119.65608 * 0.02562 * 15 14 4 32 32 H 1.08002 * 120.09014 * 180.25350 * 16 15 14 33 33 H 1.08002 * 124.92297 * 179.97438 * 19 18 17 34 34 H 1.08000 * 126.90803 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.14443 * 0.02562 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7192 -0.1785 2.1386 6 6 1.4804 -2.1200 1.2854 7 1 1.2913 -2.6499 0.3636 8 6 1.2098 -2.7232 2.4953 9 7 1.3786 -2.0552 3.6156 10 14 0.6035 -4.4894 2.5436 11 1 -0.8804 -4.5051 2.4859 12 1 1.0568 -5.1343 3.8021 13 1 1.1519 -5.2329 1.3809 14 6 3.5453 -0.7831 1.2143 15 6 4.1843 -1.4347 0.1693 16 6 5.5604 -1.4979 0.1161 17 6 6.3181 -0.9139 1.1237 18 8 7.6436 -0.8151 1.3490 19 6 7.8876 -0.1390 2.4853 20 6 6.7347 0.2354 3.0564 21 6 5.6650 -0.2602 2.1819 22 6 4.2726 -0.2015 2.2156 23 1 -0.3634 0.5724 0.8534 24 1 -0.3633 0.4528 -0.9225 25 1 -0.3633 -1.0254 0.0690 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.7800 -1.1723 3.5979 31 1 3.5976 -1.8932 -0.6130 32 1 6.0479 -2.0041 -0.7039 33 1 8.8703 0.0711 2.8808 34 1 6.6163 0.7903 3.9754 35 1 3.7705 0.3004 3.0294 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084394254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:03 Heat of formation + Delta-G solvation = 4.868782 kcal Electronic energy + Delta-G solvation = -17528.839702 eV Core-core repulsion = 14878.389687 eV Total energy + Delta-G solvation = -2650.450015 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86756 -38.15300 -35.30555 -32.48714 -32.24938 -30.04586 -28.76295 -26.78570 -25.93740 -23.28462 -22.37098 -21.10006 -20.78277 -19.09987 -17.09198 -16.82279 -16.00496 -15.58561 -15.02821 -13.86167 -13.68356 -13.54663 -13.41409 -13.12838 -12.65658 -12.46957 -12.19446 -11.84445 -11.50985 -11.44012 -11.10170 -10.84838 -10.62995 -10.31137 -10.22690 -10.11455 -9.88018 -9.68996 -9.33411 -8.74475 -8.37276 -7.69200 -7.49361 -6.37354 -4.08939 1.53431 2.15692 2.84630 3.27207 3.41008 3.45587 3.60107 4.44474 4.53919 4.93289 5.21395 5.33190 5.53484 5.69360 5.75936 5.82582 5.87510 5.98996 6.09253 6.14333 6.27127 6.37666 6.41727 6.55116 6.58041 6.66295 6.77656 6.90254 6.92249 7.03403 7.16977 7.22353 7.30787 7.41670 7.64318 7.79062 8.16492 8.39159 8.83744 9.60966 11.00010 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.008458 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.863041 B = 3309.602028 C = 3994.741080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.146 4.146 4 C 0.063 3.937 5 H 0.045 0.955 6 C -0.580 4.580 7 H 0.053 0.947 8 C 0.024 3.976 9 N -0.907 5.907 10 Si 1.065 2.935 11 H -0.287 1.287 12 H -0.285 1.285 13 H -0.288 1.288 14 C -0.038 4.038 15 C -0.073 4.073 16 C -0.121 4.121 17 C 0.023 3.977 18 O -0.204 6.204 19 C -0.014 4.014 20 C -0.209 4.209 21 C -0.131 4.131 22 C -0.089 4.089 23 H 0.041 0.959 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.271 0.729 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.199 0.801 34 H 0.150 0.850 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 4.386 -4.325 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 C -0.203 4.203 4 C 0.044 3.956 5 H 0.064 0.936 6 C -0.617 4.617 7 H 0.071 0.929 8 C -0.182 4.182 9 N -0.543 5.543 10 Si 0.893 3.107 11 H -0.214 1.214 12 H -0.211 1.211 13 H -0.214 1.214 14 C -0.039 4.039 15 C -0.091 4.091 16 C -0.140 4.140 17 C -0.023 4.023 18 O -0.107 6.107 19 C -0.079 4.079 20 C -0.228 4.228 21 C -0.132 4.132 22 C -0.108 4.108 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.216 0.784 34 H 0.167 0.833 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.695 3.087 -3.474 8.150 hybrid contribution 0.697 1.206 -0.667 1.544 sum 7.392 4.292 -4.141 9.498 Atomic orbital electron populations 1.21671 0.95769 1.02518 0.98732 1.21081 0.95493 0.93896 0.99272 1.21906 1.00556 0.97701 1.00172 1.18153 0.85898 0.97084 0.94429 0.93646 1.21813 1.45844 0.99192 0.94878 0.92895 1.25767 0.95285 1.04756 0.92353 1.70765 1.40469 1.14382 1.28649 0.83604 0.76387 0.75015 0.75670 1.21416 1.21125 1.21383 1.20451 0.99046 0.92385 0.92016 1.20803 0.91672 0.97636 0.98964 1.19832 0.92808 1.03650 0.97671 1.19523 0.80522 1.03577 0.98678 1.83904 1.24286 1.63571 1.38910 1.23705 0.99733 0.97762 0.86714 1.22487 0.91451 1.06879 1.02020 1.19917 0.94635 1.02702 0.95938 1.20179 0.90391 1.00795 0.99389 0.93963 0.95190 0.91215 0.92709 0.93362 0.94185 0.93479 0.91726 0.85321 0.86248 0.78439 0.83253 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.98 37.16 0.33 -2.15 16 2 C -0.08 -1.56 2.36 -90.62 -0.21 -1.78 16 3 C -0.15 -2.57 8.98 37.15 0.33 -2.23 16 4 C 0.06 1.46 1.44 -92.92 -0.13 1.33 16 5 H 0.05 1.15 6.08 -51.93 -0.32 0.84 16 6 C -0.58 -14.94 6.45 -34.44 -0.22 -15.16 16 7 H 0.05 1.36 7.81 -52.49 -0.41 0.95 16 8 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 9 N -0.91 -26.32 13.61 55.43 0.75 -25.56 16 10 Si 1.06 24.64 29.90 -169.99 -5.08 19.56 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 14 C -0.04 -0.84 3.62 -104.98 -0.38 -1.22 16 15 C -0.07 -1.48 8.74 -39.54 -0.35 -1.82 16 16 C -0.12 -2.28 10.07 -39.46 -0.40 -2.68 16 17 C 0.02 0.46 7.42 -38.47 -0.29 0.17 16 18 O -0.20 -3.60 10.58 3.91 0.04 -3.56 16 19 C -0.01 -0.21 11.96 29.24 0.35 0.14 16 20 C -0.21 -3.42 11.14 -37.62 -0.42 -3.84 16 21 C -0.13 -2.63 6.40 -105.16 -0.67 -3.31 16 22 C -0.09 -1.92 9.66 -39.69 -0.38 -2.31 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 1.44 6.99 -51.93 -0.36 1.08 16 26 H 0.05 1.07 7.28 -51.93 -0.38 0.70 16 27 H 0.05 0.86 7.31 -51.93 -0.38 0.48 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.27 7.78 6.55 -40.82 -0.27 7.51 16 31 H 0.13 2.48 7.53 -52.49 -0.40 2.09 16 32 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.20 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.12 2.45 7.92 -52.49 -0.42 2.04 16 LS Contribution 292.30 15.07 4.40 4.40 Total: -1.00 -29.45 292.30 -7.10 -36.55 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.68 Total: 2.93 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: -2.53 Total: -34.32 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.75 Total: -25.56 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.45 -7.10 -36.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084394254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.418 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds